Author: buildbot
Date: Tue Oct 2 21:28:22 2012
New Revision: 833801
Log:
Staging update by buildbot for airavata
Modified:
websites/staging/airavata/trunk/content/ (props changed)
websites/staging/airavata/trunk/content/community/projects-using.html
Propchange: websites/staging/airavata/trunk/content/
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Modified: websites/staging/airavata/trunk/content/community/projects-using.html
==============================================================================
--- websites/staging/airavata/trunk/content/community/projects-using.html
(original)
+++ websites/staging/airavata/trunk/content/community/projects-using.html Tue
Oct 2 21:28:22 2012
@@ -100,6 +100,10 @@
</em> Methylation profiling of genomes containing methylated CpG sequences.</p>
<p>Airavata helps BioVLab workbench lower the barriers of setting up and
maintaining computational resources and building and configuring bioinformatics
tools and databases. </p>
<p>More details about the project can be found on <a
href="https://sites.google.com/site/biovlab/";>BioVLab Project Website</a>.</p>
+<h2 id="computational-chemistry-grid">Computational Chemistry Grid</h2>
+<p>The "Computational Chemistry Grid" (CCG) is a virtual organization that
provides access to high performance computing resources for computational
chemistry with distributed support and services, intuitive interfaces and
measurable quality of service. The CCG client, GridChem, is a Java desktop
application that provides an interface to integrate the hardware, software and
middleware resources necessary to solve quantum chemistry problems using grid
technologies.</p>
+<p>CCG uses Airavata workflow capabilities to execute couple computational
workflows.</p>
+<p>More details about the project can be found on <a
href="https://www.gridchem.org/";>GridChem Website</a></p>
<h2 id="des-simwg">DES-SimWG</h2>
<p>The simulation working group for the Dark Energy Survey Dark Energy Survey
is using Airavata to develop High throughput workï¬ow environment for
cosmological simulations. The simulations provide support for analysis of
systematics in the three methods associated with large-scale structure (LSS).
The workflows devloped and executed using Airavata tools will assist the
Simulation Working Group with coordinating a Blind Cosmology Challenge (BCC)
process, in which a variety of sky realizations in dierent cosmologies are
analyzed.</p>
<p>Apache Airavata interfaces DES workflows with XSEDE resources to produce
multiple syn- thetic sky surveys of galaxies and large-scale structure in
support of science analysis for the Dark Energy Survey. The Airavata workflow
infrastructure makes it possible to scale executions to level of fifty
1010-particle simulations.</p>
@@ -117,6 +121,11 @@
<p>The Ocean Land Atmosphere Model Science Gateway is a collaboration between
a consortium of professors, research scientists and students from the
University of Miamiâs Rosenstiel School of Marine and Atmospheric Science,
Science Gateways Group at the Pervasive Technology Institute, Indiana
University, hydrology modelers and water resource managers from the South
Florida Water Management District (SFWMD), and government scientists from
NOAAâs Atlantic Oceanographic and Meteorological Laboratory. </p>
<p>The project is currently in development and OLAMâs unique, flexible mesh
refinement capability, combined with local high-resolution land surface
characteristics databases and XSEDE computing resources, will make it possible
to generate unrivaled regional climate change projections that can be used to
guide water management decisions in South Florida.</p>
<p>More details about OLAM model can be found on <a
href="http://olam-model.sourceforge.net/";>Website</a>. </p>
+<h2 id="orechem">OREChem</h2>
+<p>The Object Reuse and Exchange (ORE) integrates the information from
compound, journals containing the compound and also molecular properties of the
compound. ORE proposed by the digital libraries community aggregate resources
on the web. OREChem is a research project funded by Microsoft External Research
that aims to apply and extend ORE to
+enable the integration of experimental, bibliographical and molecular
properties data. OREChem targets crystallography as its primary application
domain. This effort has focused on designing a prototypical, semantic-based
eScience infrastructure for chemistry and chemical informatics.</p>
+<p>This project has used Airavata tools to create web services and orchestrate
them as workflows integrating chemistry scholarship with web architectures,
grid Computing and semantic Web. The project has published results but is not
currently active.</p>
+<p>For more details about on the project <a
href="http://research.microsoft.com/en-us/projects/orechem/";>Website</a></p>
<h2 id="paramchem">ParamChem</h2>
<p>ParamChem project is creating cyberenvironments to automate the process of
parameterization for classical molecular mechanics (MM) and semi-empirical (SE)
Hamiltonians and allow for wide dissemination of the developed parameters. The
Project is developing an extensible cyberenvironment for the rapid and
systematic parameterization of novel Hamiltonians; the systematic extension of
currently available models, with the resulting parameters sets from both. </p>
<p>ParamChem integrates with Apache Airavata Workflow framework to generate QM
reference data, monitoring parameter optimization and analysis. The
Architecture of ParamChem integration with Airavata and more details are on <a
href="https://cwiki.apache.org/confluence/display/AIRAVATA/Param+Chem";>Wiki</a></p>
