svn commit: r1393206 - /airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java

[lahiru]

Author: lahiru
Date: Tue Oct  2 22:01:28 2012
New Revision: 1393206

URL: http://svn.apache.org/viewvc?rev=1393206&view=rev
Log:
Fixing Array index outof bound

Modified:
    
airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java

Modified: 
airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java
URL: 
http://svn.apache.org/viewvc/airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java?rev=1393206&r1=1393205&r2=1393206&view=diff
==============================================================================
--- 
airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java
 (original)
+++ 
airavata/trunk/modules/commons/registry-api/src/main/java/org/apache/airavata/registry/api/workflow/WorkflowInstanceNodeData.java
 Tue Oct  2 22:01:28 2012
@@ -59,10 +59,10 @@ public class    WorkflowInstanceNodeData
                        for (String paras : pairs) {
                                String[] nameVals = paras.trim().split("=");
                 NameValue pair = null;
-                if(nameVals.length != 0){
+                if(nameVals.length >= 2){
                                 pair = new NameValue(nameVals[0].trim(),
                                                nameVals[1].trim());
-                }else{
+                }else if(nameVals.length == 1){
                   pair = new NameValue(nameVals[0].trim(),
                                                "");
                 }
@@ -117,4 +117,10 @@ public class    WorkflowInstanceNodeData
        public void setOutput(String output) {
                this.output = output;
        }
+
+    public static void main(String[] args) {
+        String input="molecule_id=3pom, 
geom_mol2=http://ccg-mw1.ncsa.uiuc.edu/cgenff/x_baya/cgenff_project/3pom/3pom.mol2,
 
toppar_main_tgz=/u/ac/ccguser/proposed_dir_structure/toppar/cgenff/releases/2b7/main.tgz,
 toppar_usr_tgz=gsiftp://login-ember.ncsa.teragrid.org, 
toppar_mol_str=http://ccg-mw1.ncsa.uiuc.edu/cgenff/x_baya/cgenff_project/3pom/toppar/3pom.str,
 molecule_dir_in_tgz=, GC_UserName=x_baya, GC_ProjectName=x_baya, 
GC_WorkflowName=3pom__1349212666 | 
opt_freq_input_gjf=/gpfs2/scratch/users/ccguser/xbaya-workdirs/login-ember.ncsa.teragrid.org_application_Tue_Oct_02_17_18_34_EDT_2012_0933dae4-f7c7-4022-87d9-ab370c49a8bd/3pom/gauss/3pom_opt_freq_mp2.gjf,
 
charmm_miminized_crd=/gpfs2/scratch/users/ccguser/xbaya-workdirs/login-ember.ncsa.teragrid.org_application_Tue_Oct_02_17_18_34_EDT_2012_0933dae4-f7c7-4022-87d9-ab370c49a8bd/3pom/generate/3pom_min.crd,
 
step1_log=/gpfs2/scratch/users/ccguser/xbaya-workdirs/login-ember.ncsa.teragrid.org_application_Tue_Oct_02_17_18_34_EDT
 _2012_0933dae4-f7c7-4022-87d9-ab370c49a8bd/3pom/generate/generate.out, 
molecule_dir_out_tgz=/gpfs2/scratch/users/ccguser/xbaya-workdirs/login-ember.ncsa.teragrid.org_application_Tue_Oct_02_17_18_34_EDT_2012_0933dae4-f7c7-4022-87d9-ab370c49a8bd/molecule_dir_out.tgz,
 
gcvars=/gpfs2/scratch/users/ccguser/xbaya-workdirs/login-ember.ncsa.teragrid.org_application_Tue_Oct_02_17_18_34_EDT_2012_0933dae4-f7c7-4022-87d9-ab370c49a8bd/GCVARS";
+
+         getIOParameterData(input);
+    }
 }