Author: lahiru
Date: Sat Oct 12 15:14:17 2013
New Revision: 1531542
URL: http://svn.apache.org/r1531542
Log:
adding new gfac dependencies to the build.
Added:
airavata/trunk/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
Modified:
airavata/trunk/modules/distribution/airavata-server/pom.xml
airavata/trunk/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
Modified: airavata/trunk/modules/distribution/airavata-server/pom.xml
URL:
http://svn.apache.org/viewvc/airavata/trunk/modules/distribution/airavata-server/pom.xml?rev=1531542&r1=1531541&r2=1531542&view=diff
==============================================================================
--- airavata/trunk/modules/distribution/airavata-server/pom.xml (original)
+++ airavata/trunk/modules/distribution/airavata-server/pom.xml Sat Oct 12
15:14:17 2013
@@ -622,6 +622,26 @@
<artifactId>cors-filter</artifactId>
<version>${ebay.cors.filter}</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>gsissh</artifactId>
+ <version>0.1-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>com.jcraft</groupId>
+ <artifactId>jsch</artifactId>
+ <version>0.1.50</version>
+ </dependency>
+ <dependency>
+ <groupId>edu.illinois.ncsa</groupId>
+ <artifactId>bcgss</artifactId>
+ <version>146</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.xmlbeans</groupId>
+ <artifactId>xmlbeans</artifactId>
+ <version>${xmlbeans.version}</version>
+ </dependency>
</dependencies>
Modified:
airavata/trunk/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
URL:
http://svn.apache.org/viewvc/airavata/trunk/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml?rev=1531542&r1=1531541&r2=1531542&view=diff
==============================================================================
---
airavata/trunk/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
(original)
+++
airavata/trunk/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
Sat Oct 12 15:14:17 2013
@@ -134,6 +134,7 @@
<include>persistence.xml</include>
<include>provenance.sql</include>
<include>gfac-config.xml</include>
+ <include>PBSTemplate.xslt</include>
</includes>
</fileSet>
@@ -245,6 +246,7 @@
<include>org.apache.airavata:airavata-rest-services</include>
<include>org.apache.airavata:airavata-security</include>
<include>org.apache.airavata:json</include>
+ <include>org.apache.airavata:gsissh</include>
<include>org.apache.openjpa:openjpa-all:jar</include>
<include>com.sun.jersey:jersey-client:jar</include>
<include>com.sun.jersey:jersey-core:jar</include>
@@ -285,6 +287,8 @@
<include>de.odysseus.staxon:staxon:jar:1.2</include>
<include>de.odysseus.staxon:staxon-jackson:jar:1.2</include>
<include>org.ebaysf.web:cors-filter:jar:1.0.0</include>
+ <include>edu.illinois.ncsa:bcgss</include>
+ <include>org.apache.xmlbeans:xmlbeans</include>
</includes>
</dependencySet>
<dependencySet>
Added:
airavata/trunk/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
URL:
http://svn.apache.org/viewvc/airavata/trunk/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt?rev=1531542&view=auto
==============================================================================
---
airavata/trunk/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
(added)
+++
airavata/trunk/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
Sat Oct 12 15:14:17 2013
@@ -0,0 +1,78 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one or more
contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding
copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theà "License"); you may not use this
file except in compliance with the License. You may
+ obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or
agreed to
+ in writing, software distributed under the License is distributed on an
"AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific
language governing permissions and limitations under
+ the License. -->
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform";
xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12";>
+<xsl:output method="text" />
+<xsl:template match="/ns:JobDescriptor">
+#! /bin/sh
+# PBS batch job script built by Globus job manager
+# <xsl:choose>
+ <xsl:when test="ns:shellName">
+##PBS -S <xsl:value-of select="ns:shellName"/>
+ </xsl:when></xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:queueName">
+#PBS -q <xsl:value-of select="ns:queueName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:mailOptions">
+#PBS -m <xsl:value-of select="ns:mailOptions"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+<xsl:when test="ns:acountString">
+#PBS -A <xsl:value-of select="ns:acountString"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:maxWallTime">
+#PBS -l walltime=<xsl:value-of select="ns:maxWallTime"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:jobName">
+#PBS -N <xsl:value-of select="ns:jobName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#PBS -o <xsl:value-of select="ns:standardOutFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#PBS -e <xsl:value-of select="ns:standardErrorFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="(ns:nodes) and (ns:processesPerNode)">
+#PBS -l nodes=<xsl:value-of select="ns:nodes"/>:ppn=<xsl:value-of
select="ns:processesPerNode"/>
+<xsl:text>
</xsl:text>
+ </xsl:when>
+ </xsl:choose>
+<xsl:for-each select="ns:exports/ns:name">
+<xsl:value-of select="."/>=<xsl:value-of
select="./@value"/><xsl:text>
</xsl:text>
+export<xsl:text> </xsl:text><xsl:value-of select="."/>
+<xsl:text>
</xsl:text>
+</xsl:for-each>
+<xsl:for-each select="ns:preJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+cd <xsl:text> </xsl:text><xsl:value-of
select="ns:workingDirectory"/><xsl:text>
</xsl:text>
+ <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
+<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text>
</xsl:text></xsl:when></xsl:choose><xsl:value-of
select="ns:executablePath"/><xsl:text> </xsl:text>
+<xsl:for-each select="ns:inputs/ns:input">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+<xsl:for-each select="ns:postJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+</xsl:for-each>
+
+</xsl:template>
+
+</xsl:stylesheet>
\ No newline at end of file
