http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java new file mode 100644 index 0000000..9450ea9 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java @@ -0,0 +1,539 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.g1; + +import java_cup.runtime.lr_parser; +import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser; + +import javax.swing.*; +import java.io.FileReader; +import java.util.ArrayList; +import java.util.HashMap; + + +public class G1Parser extends java_cup.runtime.lr_parser implements GridChemQueueParser { + + /** Default constructor. */ + public G1Parser() {super();} + + /** Constructor which sets the default scanner. */ + public G1Parser(java_cup.runtime.Scanner s) {super(s);} + + /** + * Constructor which uses a file reader. + */ + public G1Parser(final FileReader fileReader) { + super(new G1Lexer(fileReader)); + } + + /** Production table. */ + protected static final short _production_table[][] = + lr_parser.unpackFromStrings(new String[]{ + "\000\025\000\002\003\007\000\002\002\004\000\002\004" + + "\003\000\002\005\004\000\002\005\003\000\002\021\002" + + "\000\002\006\006\000\002\022\002\000\002\007\007\000" + + "\002\010\004\000\002\011\004\000\002\012\004\000\002" + + "\013\003\000\002\014\004\000\002\014\003\000\002\023" + + "\002\000\002\016\006\000\002\024\002\000\002\015\007" + + "\000\002\017\004\000\002\020\004"}); + + /** Access to production table. */ + public short[][] production_table() {return _production_table;} + + /** Parse-action table. */ + protected static final short[][] _action_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\052\000\004\004\005\001\002\000\004\007\012\001" + + "\002\000\004\007\uffff\001\002\000\004\002\007\001\002" + + "\000\004\002\000\001\002\000\006\005\027\007\012\001" + + "\002\000\006\005\ufffd\007\ufffd\001\002\000\004\022\013" + + "\001\002\000\004\006\ufffc\001\002\000\004\006\016\001" + + "\002\000\006\005\ufffb\007\ufffb\001\002\000\004\020\017" + + "\001\002\000\004\010\ufffa\001\002\000\004\010\022\001" + + "\002\000\004\011\024\001\002\000\004\023\023\001\002" + + "\000\004\011\ufff8\001\002\000\004\024\026\001\002\000" + + "\006\005\ufff9\007\ufff9\001\002\000\006\005\ufff7\007\ufff7" + + "\001\002\000\004\012\031\001\002\000\006\005\ufffe\007" + + "\ufffe\001\002\000\004\014\ufff5\001\002\000\004\017\054" + + "\001\002\000\004\014\035\001\002\000\006\014\035\017" + + "\ufff6\001\002\000\004\025\037\001\002\000\006\014\ufff3" + + "\017\ufff3\001\002\000\004\013\ufff2\001\002\000\004\013" + + "\041\001\002\000\004\021\043\001\002\000\006\014\ufff1" + + "\017\ufff1\001\002\000\004\015\ufff0\001\002\000\004\015" + + "\046\001\002\000\004\016\051\001\002\000\004\026\047" + + "\001\002\000\004\016\uffee\001\002\000\006\014\uffef\017" + + "\uffef\001\002\000\004\027\052\001\002\000\006\014\uffed" + + "\017\uffed\001\002\000\006\014\ufff4\017\ufff4\001\002\000" + + "\004\002\001\001\002"}); + + /** Access to parse-action table. */ + public short[][] action_table() {return _action_table;} + + /** <code>reduce_goto</code> table. */ + protected static final short[][] _reduce_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\052\000\006\003\005\004\003\001\001\000\006\005" + + "\007\006\010\001\001\000\002\001\001\000\002\001\001" + + "\000\002\001\001\000\004\006\027\001\001\000\002\001" + + "\001\000\002\001\001\000\004\021\013\001\001\000\004" + + "\007\014\001\001\000\002\001\001\000\002\001\001\000" + + "\004\022\017\001\001\000\004\010\020\001\001\000\004" + + "\011\024\001\001\000\002\001\001\000\002\001\001\000" + + "\002\001\001\000\002\001\001\000\002\001\001\000\006" + + "\012\031\013\032\001\001\000\002\001\001\000\002\001" + + "\001\000\002\001\001\000\006\014\033\016\035\001\001" + + "\000\004\016\052\001\001\000\002\001\001\000\002\001" + + "\001\000\004\023\037\001\001\000\004\015\041\001\001" + + "\000\002\001\001\000\002\001\001\000\004\024\043\001" + + "\001\000\004\017\044\001\001\000\004\020\047\001\001" + + "\000\002\001\001\000\002\001\001\000\002\001\001\000" + + "\002\001\001\000\002\001\001\000\002\001\001\000\002" + + "\001\001"}); + + /** Access to <code>reduce_goto</code> table. */ + public short[][] reduce_table() {return _reduce_table;} + + /** Instance of action encapsulation class. */ + protected CUP$parser$actions action_obj; + + //Each string is of the format + //rmsForce, maximum force, iteration and energy + private ArrayList<String> result = new ArrayList<String>(); + private String tempStr = ""; + + + public ArrayList<String> getResult() { + return result; + } + + + public void addToResult(String value) { + result.add(value); + } + + public String getTempStr() { + return tempStr; + } + + public void setTempStr(String s) { + this.tempStr = s; + } + + /*Adding the parsed data to the hash map */ + @Override + public HashMap<String, String> getParsedData() throws Exception { + parse(); + HashMap<String,String> results= new HashMap<String,String>(); + int mpRMSForceCount=0; + int mpMaximumForceCount=0; + int mpIterationCount=0; + int energyCount=0; + int rmsForceCount=0; + int maximumForceCount=0; + int iterationCount=0; + for(int i=0;i<result.size();i++){ + String singleString= result.get(i); + String[] temp = singleString.split(" "); + String secondElement=temp[1]; + String thirdElement=temp[2]; + if(thirdElement.equals("RMS")){ + results.put("G1_Mp_RMS_Force_"+mpRMSForceCount,temp[4]); + mpRMSForceCount++; + }else if (thirdElement.equals("Maximum")){ + results.put("G1_MP_Maximum_Force_"+mpMaximumForceCount,temp[4]); + mpMaximumForceCount++; + }else if (temp[3].equals("ITERATION")&&temp[2].equals("MP")){ + results.put("G1_MP_Iteration_"+mpIterationCount,temp[3]); + mpIterationCount++; + }else if(thirdElement.equals("ENERGY")){ + results.put("G1_Energy_"+energyCount,temp[3]); + energyCount++; + }else if(secondElement.equals("RMS")){ + results.put("G1_RMS_Force"+rmsForceCount,temp[3]); + rmsForceCount++; + }else if(secondElement.equals("Maximum")){ + results.put("G1_Maximum_Force"+maximumForceCount,temp[3]); + maximumForceCount++; + }else if(thirdElement.equals("ITERATION")){ + results.put("G1_Iteration_"+iterationCount,temp[3]); + iterationCount++; + } + } + + return results; + } + + /** Action encapsulation object initializer. */ + protected void init_actions() + { + action_obj = new CUP$parser$actions(this); + } + + /** Invoke a user supplied parse action. */ + public java_cup.runtime.Symbol do_action( + int act_num, + java_cup.runtime.lr_parser parser, + java.util.Stack stack, + int top) + throws java.lang.Exception + { + /* call code in generated class */ + return action_obj.CUP$parser$do_action(act_num, parser, stack, top); + } + + /** Indicates start state. */ + public int start_state() {return 0;} + /** Indicates start production. */ + public int start_production() {return 1;} + + /** <code>EOF</code> Symbol index. */ + public int EOF_sym() {return 0;} + + /** <code>error</code> Symbol index. */ + public int error_sym() {return 1;} + + +} + +/** Cup generated class to encapsulate user supplied action code.*/ +class CUP$parser$actions { + + + //__________________________________ + public static boolean DEBUG = true; + private static JTable table; + private static final String tableLabel = "SCF Intermediate Results:"; +// private static String cycle = "0"; + + + public static JTable getTable() { + return table; + } + + public static String getTableLabel() { + return tableLabel; + } + +// } + + private final G1Parser G1Parser; + + /** Constructor */ + CUP$parser$actions(G1Parser G1Parser) { + this.G1Parser = G1Parser; + } + + /** Method with the actual generated action code. */ + public final java_cup.runtime.Symbol CUP$parser$do_action( + int CUP$parser$act_num, + java_cup.runtime.lr_parser CUP$parser$parser, + java.util.Stack CUP$parser$stack, + int CUP$parser$top) + throws java.lang.Exception + { + /* Symbol object for return from actions */ + java_cup.runtime.Symbol CUP$parser$result; + + /* select the action based on the action number */ + switch (CUP$parser$act_num) + { + /*. . . . . . . . . . . . . . . . . . . .*/ + case 20: // force2 ::= MPRms MPRGRAD + { + Object RESULT = null; + int mprgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int mprgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float mprg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:g1: MP RMS Force "+mprg); + G1Parser.addToResult("CUP:g1: MP RMS Force "+mprg); + + CUP$parser$result = new java_cup.runtime.Symbol(14/*force2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 19: // force1 ::= MPMax MPMGRAD + { + Object RESULT = null; + int mpmgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int mpmgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float mpmg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:g1: MP Maximum Force "+mpmg); + G1Parser.addToResult("CUP:g1: MP Maximum Force "+mpmg); + + CUP$parser$result = new java_cup.runtime.Symbol(13/*force1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 18: // mpcycle ::= NMP MPITER NT$3 force1 force2 + { + Object RESULT = null; + // propagate RESULT from NT$3 + if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value != null ) + RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value; + int itleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left; + int itright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).right; + Integer it = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-3)).value; + + CUP$parser$result = new java_cup.runtime.Symbol(11/*mpcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 17: // NT$3 ::= + { + Object RESULT = null; + int itleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int itright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Integer it = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:g1: MP ITERATION "+it); + G1Parser.addToResult("CUP:g1: MP ITERATION "+it); + + CUP$parser$result = new java_cup.runtime.Symbol(18/*NT$3*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 16: // mpcycle1 ::= MPEnerg MPENERGY NT$2 mpcycle + { + Object RESULT = null; + // propagate RESULT from NT$2 + if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value != null ) + RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + int mpenleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left; + int mpenright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).right; + Float mpen = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value; + + CUP$parser$result = new java_cup.runtime.Symbol(12/*mpcycle1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 15: // NT$2 ::= + { + Object RESULT = null; + int mpenleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int mpenright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float mpen = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:g1: ENERGY "+mpen); + G1Parser.addToResult("CUP:g1: ENERGY "+mpen); + + CUP$parser$result = new java_cup.runtime.Symbol(17/*NT$2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 14: // mppat ::= mpcycle1 + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(10/*mppat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 13: // mppat ::= mppat mpcycle1 + { + Object RESULT = null; + + if (DEBUG) System.out.println("CUP:g1: in mppat"); + + CUP$parser$result = new java_cup.runtime.Symbol(10/*mppat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 12: // mpintro ::= MPStart + { + Object RESULT = null; + + if (DEBUG) System.out.println("CUP:g1: MPSTart "); + + CUP$parser$result = new java_cup.runtime.Symbol(9/*mpintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 11: // mp2 ::= mpintro mppat + { + Object RESULT = null; + + if (DEBUG) System.out.println("CUP:g1: in mp2 mpintro mppat"); + + CUP$parser$result = new java_cup.runtime.Symbol(8/*mp2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 10: // grad2 ::= RmsGrad1 RGRAD1 + { + Object RESULT = null; + int rgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int rgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float rg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gopt: RMS Force "+rg); + G1Parser.addToResult("CUP:gopt: RMS Force "+rg); + + CUP$parser$result = new java_cup.runtime.Symbol(7/*grad2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 9: // grad1 ::= MaxGrad1 MGRAD1 + { + Object RESULT = null; + int mgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int mgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float mg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gopt: Maximum Force "+mg); + G1Parser.addToResult("CUP:gopt: Maximum Force "+mg); + + CUP$parser$result = new java_cup.runtime.Symbol(6/*grad1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 8: // cycle ::= NSearch1 ITERATION1 NT$1 grad1 grad2 + { + Object RESULT = null; + // propagate RESULT from NT$1 + if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value != null ) + RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value; + int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left; + int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).right; + Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-3)).value; + + CUP$parser$result = new java_cup.runtime.Symbol(5/*cycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 7: // NT$1 ::= + { + Object RESULT = null; + int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gopt: ITERATION "+c); + G1Parser.addToResult("CUP:gopt: ITERATION "+c); + + CUP$parser$result = new java_cup.runtime.Symbol(16/*NT$1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 6: // scfcycle ::= Energ1 ENERGY1 NT$0 cycle + { + Object RESULT = null; + // propagate RESULT from NT$0 + if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value != null ) + RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left; + int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).right; + Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value; + + CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 5: // NT$0 ::= + { + Object RESULT = null; + int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left; + int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right; + Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value; + //___________________________________________________________________ + if (DEBUG) System.out.println("CUP:gopt: ENERGY "+e); + G1Parser.addToResult("CUP:gopt: ENERGY "+e); + + CUP$parser$result = new java_cup.runtime.Symbol(15/*NT$0*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 4: // scfpat ::= scfcycle + { + Object RESULT = null; + + CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 3: // scfpat ::= scfpat scfcycle + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gopt: in scfpat"); + CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 2: // scfintro ::= FOUNDITER1 + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gopt: found the start of Iteration"); + CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 1: // $START ::= startpt EOF + { + Object RESULT = null; + int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left; + int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right; + Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + RESULT = start_val; + CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + /* ACCEPT */ + CUP$parser$parser.done_parsing(); + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 0: // startpt ::= scfintro scfpat SCFDONE1 mp2 MPDONE + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gopt: end of parse tree "); + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /* . . . . . .*/ + default: + throw new Exception( + "Invalid action number found in internal parse table"); + + } + } +} +
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java new file mode 100644 index 0000000..f0e5e06 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java @@ -0,0 +1,54 @@ + +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.g1; +//---------------------------------------------------- +// The following code was generated by CUP v0.10k +// Wed Sep 10 08:33:37 IST 2014 +//---------------------------------------------------- + +/** CUP generated class containing symbol constants. */ +public class G1Sym { + /* terminals */ + public static final int ENERGY1 = 16; + public static final int MPMGRAD = 20; + public static final int MGRAD1 = 17; + public static final int MaxGrad1 = 6; + public static final int NSearch1 = 4; + public static final int MPRGRAD = 21; + public static final int MPRms = 12; + public static final int RmsGrad1 = 7; + public static final int MPMax = 11; + public static final int MPDONE = 13; + public static final int EOF = 0; + public static final int MPENERGY = 19; + public static final int ITERATION1 = 14; + public static final int NMP = 9; + public static final int MPEnerg = 10; + public static final int error = 1; + public static final int MPITER = 15; + public static final int MPStart = 8; + public static final int FOUNDITER1 = 2; + public static final int Energ1 = 5; + public static final int SCFDONE1 = 3; + public static final int RGRAD1 = 18; +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java new file mode 100644 index 0000000..9801a99 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java @@ -0,0 +1,864 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.gaussian;/* The following code was generated by JFlex 1.4.3 on 9/10/14 9:00 AM */ + +import java_cup.runtime.Symbol; +import org.apache.airavata.datacat.parsers.gridchem.Settings; + +import java.io.FileOutputStream; +import java.io.IOException; +import java.io.PrintStream; + + +/** + * This class is a scanner generated by + * <a href="http://www.jflex.de/";>JFlex</a> 1.4.3 + * on 9/10/14 9:00 AM from the specification file + * <tt>gaussian.flex</tt> + */ +public class GaussianLexer implements java_cup.runtime.Scanner { + + /** This character denotes the end of file */ + public static final int YYEOF = -1; + + /** initial size of the lookahead buffer */ + private static final int ZZ_BUFFERSIZE = 16384; + + /** lexical states */ + public static final int IGNOREALL = 6; + public static final int ITER1 = 4; + public static final int YYINITIAL = 0; + public static final int ITER = 2; + + /** + * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l + * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l + * at the beginning of a line + * l is of the form l = 2*k, k a non negative integer + */ + private static final int ZZ_LEXSTATE[] = { + 0, 0, 1, 1, 2, 2, 3, 3 + }; + + /** + * Translates characters to character classes + */ + private static final char [] ZZ_CMAP = { + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 6, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0, + 0, 19, 9, 0, 10, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, + 0, 0, 0, 0, 0, 0, 13, 18, 12, 0, 0, 0, 0, 7, 0, 0, + 8, 0, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 21, 0, 23, 15, 22, 14, 0, 0, 0, 0, 24, 0, 3, + 4, 0, 16, 20, 5, 17, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + + /** + * Translates DFA states to action switch labels. + */ + private static final int [] ZZ_ACTION = zzUnpackAction(); + + private static final String ZZ_ACTION_PACKED_0 = + "\4\0\22\1\4\0\1\2\2\0\1\3\4\0\1\4"+ + "\6\0\1\5\1\6\1\7\1\10\1\11\1\0\1\12"+ + "\1\13\1\14\1\15\3\0\1\16\1\0\1\17\1\20"+ + "\42\0\1\21\1\22"; + + private static int [] zzUnpackAction() { + int [] result = new int[94]; + int offset = 0; + offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAction(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /** + * Translates a state to a row index in the transition table + */ + private static final int [] ZZ_ROWMAP = zzUnpackRowMap(); + + private static final String ZZ_ROWMAP_PACKED_0 = + "\0\0\0\31\0\62\0\113\0\144\0\175\0\226\0\257"+ + "\0\310\0\341\0\372\0\u0113\0\u012c\0\u0145\0\u015e\0\u0177"+ + "\0\u0190\0\u01a9\0\u01c2\0\u01db\0\u01f4\0\u020d\0\u0226\0\u023f"+ + "\0\u0258\0\u0271\0\144\0\u028a\0\u02a3\0\144\0\u02bc\0\u02d5"+ + "\0\u02ee\0\u0307\0\144\0\u01a9\0\u0320\0\u0339\0\u0352\0\u036b"+ + "\0\u0384\0\144\0\144\0\144\0\144\0\144\0\u039d\0\144"+ + "\0\144\0\144\0\144\0\u03b6\0\u03cf\0\u03e8\0\144\0\u0401"+ + "\0\144\0\144\0\u041a\0\u0433\0\u044c\0\u0465\0\u047e\0\u0497"+ + "\0\u04b0\0\u04c9\0\u04e2\0\u04fb\0\u0514\0\u052d\0\u0546\0\u055f"+ + "\0\u0578\0\u0591\0\u05aa\0\u05c3\0\u05dc\0\u05f5\0\u060e\0\u0627"+ + "\0\u0640\0\u0659\0\u0672\0\u068b\0\u06a4\0\u06bd\0\u06d6\0\u06ef"+ + "\0\u0708\0\u0721\0\u073a\0\u0753\0\144\0\144"; + + private static int [] zzUnpackRowMap() { + int [] result = new int[94]; + int offset = 0; + offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackRowMap(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int high = packed.charAt(i++) << 16; + result[j++] = high | packed.charAt(i++); + } + return j; + } + + /** + * The transition table of the DFA + */ + private static final int [] ZZ_TRANS = zzUnpackTrans(); + + private static final String ZZ_TRANS_PACKED_0 = + "\2\5\1\6\31\5\1\7\3\5\1\10\3\5\1\11"+ + "\2\5\1\12\1\5\1\13\1\14\1\15\10\5\1\16"+ + "\1\17\3\5\1\20\3\5\1\21\2\5\1\22\1\5"+ + "\1\23\1\24\2\5\1\25\1\5\1\26\33\5\33\0"+ + "\1\27\32\0\1\30\34\0\1\31\34\0\1\32\33\0"+ + "\1\33\27\0\1\34\30\0\1\35\35\0\1\36\7\0"+ + "\1\37\32\0\1\40\34\0\1\41\34\0\1\42\33\0"+ + "\1\43\27\0\1\44\30\0\1\45\37\0\1\46\32\0"+ + "\1\47\3\0\1\50\33\0\1\51\34\0\1\52\1\53"+ + "\33\0\1\54\32\0\1\55\30\0\1\56\13\0\1\57"+ + "\33\0\1\60\34\0\1\61\34\0\1\62\32\0\1\63"+ + "\30\0\1\64\14\0\1\65\27\0\1\66\34\0\1\67"+ + "\24\0\1\70\27\0\1\71\57\0\1\72\2\0\1\73"+ + "\30\0\1\74\30\0\1\75\30\0\1\76\30\0\1\77"+ + "\30\0\1\100\30\0\1\101\30\0\1\102\30\0\1\103"+ + "\30\0\1\104\30\0\1\105\30\0\1\106\30\0\1\107"+ + "\30\0\1\110\30\0\1\111\30\0\1\112\30\0\1\113"+ + "\30\0\1\114\30\0\1\115\30\0\1\116\30\0\1\117"+ + "\30\0\1\120\30\0\1\121\30\0\1\122\30\0\1\123"+ + "\30\0\1\124\30\0\1\125\30\0\1\126\30\0\1\127"+ + "\30\0\1\130\30\0\1\131\30\0\1\132\30\0\1\133"+ + "\30\0\1\134\30\0\1\135\30\0\1\136\26\0"; + + private static int [] zzUnpackTrans() { + int [] result = new int[1900]; + int offset = 0; + offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackTrans(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + value--; + do result[j++] = value; while (--count > 0); + } + return j; + } + + + /* error codes */ + private static final int ZZ_UNKNOWN_ERROR = 0; + private static final int ZZ_NO_MATCH = 1; + private static final int ZZ_PUSHBACK_2BIG = 2; + + /* error messages for the codes above */ + private static final String ZZ_ERROR_MSG[] = { + "Unkown internal scanner error", + "Error: could not match input", + "Error: pushback value was too large" + }; + + /** + * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code> + */ + private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute(); + + private static final String ZZ_ATTRIBUTE_PACKED_0 = + "\4\0\1\11\21\1\4\0\1\11\2\0\1\11\4\0"+ + "\1\11\6\0\5\11\1\0\4\11\3\0\1\11\1\0"+ + "\2\11\42\0\2\11"; + + private static int [] zzUnpackAttribute() { + int [] result = new int[94]; + int offset = 0; + offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result); + return result; + } + + private static int zzUnpackAttribute(String packed, int offset, int [] result) { + int i = 0; /* index in packed string */ + int j = offset; /* index in unpacked array */ + int l = packed.length(); + while (i < l) { + int count = packed.charAt(i++); + int value = packed.charAt(i++); + do result[j++] = value; while (--count > 0); + } + return j; + } + + /** the input device */ + private java.io.Reader zzReader; + + /** the current state of the DFA */ + private int zzState; + + /** the current lexical state */ + private int zzLexicalState = YYINITIAL; + + /** this buffer contains the current text to be matched and is + the source of the yytext() string */ + private char zzBuffer[] = new char[ZZ_BUFFERSIZE]; + + /** the textposition at the last accepting state */ + private int zzMarkedPos; + + /** the current text position in the buffer */ + private int zzCurrentPos; + + /** startRead marks the beginning of the yytext() string in the buffer */ + private int zzStartRead; + + /** endRead marks the last character in the buffer, that has been read + from input */ + private int zzEndRead; + + /** number of newlines encountered up to the start of the matched text */ + private int yyline; + + /** the number of characters up to the start of the matched text */ + private int yychar; + + /** + * the number of characters from the last newline up to the start of the + * matched text + */ + private int yycolumn; + + /** + * zzAtBOL == true <=> the scanner is currently at the beginning of a line + */ + private boolean zzAtBOL = true; + + /** zzAtEOF == true <=> the scanner is at the EOF */ + private boolean zzAtEOF; + + /** denotes if the user-EOF-code has already been executed */ + private boolean zzEOFDone; + + /* user code: */ + public static boolean DEBUG = false; + + + /** + * Creates a new scanner + * There is also a java.io.InputStream version of this constructor. + * + * @param in the java.io.Reader to read input from. + */ + public GaussianLexer(java.io.Reader in) { + this.zzReader = in; + } + + /** + * Creates a new scanner. + * There is also java.io.Reader version of this constructor. + * + * @param in the java.io.Inputstream to read input from. + */ + public GaussianLexer(java.io.InputStream in) { + this(new java.io.InputStreamReader(in)); + } + + + /** + * Refills the input buffer. + * + * @return <code>false</code>, iff there was new input. + * + * @exception java.io.IOException if any I/O-Error occurs + */ + private boolean zzRefill() throws java.io.IOException { + + /* first: make room (if you can) */ + if (zzStartRead > 0) { + System.arraycopy(zzBuffer, zzStartRead, + zzBuffer, 0, + zzEndRead-zzStartRead); + + /* translate stored positions */ + zzEndRead-= zzStartRead; + zzCurrentPos-= zzStartRead; + zzMarkedPos-= zzStartRead; + zzStartRead = 0; + } + + /* is the buffer big enough? */ + if (zzCurrentPos >= zzBuffer.length) { + /* if not: blow it up */ + char newBuffer[] = new char[zzCurrentPos*2]; + System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length); + zzBuffer = newBuffer; + } + + /* finally: fill the buffer with new input */ + int numRead = zzReader.read(zzBuffer, zzEndRead, + zzBuffer.length-zzEndRead); + + if (numRead > 0) { + zzEndRead+= numRead; + return false; + } + // unlikely but not impossible: read 0 characters, but not at end of stream + if (numRead == 0) { + int c = zzReader.read(); + if (c == -1) { + return true; + } else { + zzBuffer[zzEndRead++] = (char) c; + return false; + } + } + + // numRead < 0 + return true; + } + + + /** + * Closes the input stream. + */ + public final void yyclose() throws java.io.IOException { + zzAtEOF = true; /* indicate end of file */ + zzEndRead = zzStartRead; /* invalidate buffer */ + + if (zzReader != null) + zzReader.close(); + } + + + /** + * Resets the scanner to read from a new input stream. + * Does not close the old reader. + * + * All internal variables are reset, the old input stream + * <b>cannot</b> be reused (internal buffer is discarded and lost). + * Lexical state is set to <tt>ZZ_INITIAL</tt>. + * + * @param reader the new input stream + */ + public final void yyreset(java.io.Reader reader) { + zzReader = reader; + zzAtBOL = true; + zzAtEOF = false; + zzEOFDone = false; + zzEndRead = zzStartRead = 0; + zzCurrentPos = zzMarkedPos = 0; + yyline = yychar = yycolumn = 0; + zzLexicalState = YYINITIAL; + } + + + /** + * Returns the current lexical state. + */ + public final int yystate() { + return zzLexicalState; + } + + + /** + * Enters a new lexical state + * + * @param newState the new lexical state + */ + public final void yybegin(int newState) { + zzLexicalState = newState; + } + + + /** + * Returns the text matched by the current regular expression. + */ + public final String yytext() { + return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead ); + } + + + /** + * Returns the character at position <tt>pos</tt> from the + * matched text. + * + * It is equivalent to yytext().charAt(pos), but faster + * + * @param pos the position of the character to fetch. + * A value from 0 to yylength()-1. + * + * @return the character at position pos + */ + public final char yycharat(int pos) { + return zzBuffer[zzStartRead+pos]; + } + + + /** + * Returns the length of the matched text region. + */ + public final int yylength() { + return zzMarkedPos-zzStartRead; + } + + + /** + * Reports an error that occured while scanning. + * + * In a wellformed scanner (no or only correct usage of + * yypushback(int) and a match-all fallback rule) this method + * will only be called with things that "Can't Possibly Happen". + * If this method is called, something is seriously wrong + * (e.g. a JFlex bug producing a faulty scanner etc.). + * + * Usual syntax/scanner level error handling should be done + * in error fallback rules. + * + * @param errorCode the code of the errormessage to display + */ + private void zzScanError(int errorCode) { + String message; + try { + message = ZZ_ERROR_MSG[errorCode]; + } + catch (ArrayIndexOutOfBoundsException e) { + message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR]; + } + + throw new Error(message); + } + + + /** + * Pushes the specified amount of characters back into the input stream. + * + * They will be read again by then next call of the scanning method + * + * @param number the number of characters to be read again. + * This number must not be greater than yylength()! + */ + public void yypushback(int number) { + if ( number > yylength() ) + zzScanError(ZZ_PUSHBACK_2BIG); + + zzMarkedPos -= number; + } + + + /** + * Contains user EOF-code, which will be executed exactly once, + * when the end of file is reached + */ + private void zzDoEOF() throws java.io.IOException { + if (!zzEOFDone) { + zzEOFDone = true; + yyclose(); + } + } + + + /** + * Resumes scanning until the next regular expression is matched, + * the end of input is encountered or an I/O-Error occurs. + * + * @return the next token + * @exception java.io.IOException if any I/O-Error occurs + */ + public java_cup.runtime.Symbol next_token() throws java.io.IOException { + int zzInput; + int zzAction; + + // cached fields: + int zzCurrentPosL; + int zzMarkedPosL; + int zzEndReadL = zzEndRead; + char [] zzBufferL = zzBuffer; + char [] zzCMapL = ZZ_CMAP; + + int [] zzTransL = ZZ_TRANS; + int [] zzRowMapL = ZZ_ROWMAP; + int [] zzAttrL = ZZ_ATTRIBUTE; + + while (true) { + zzMarkedPosL = zzMarkedPos; + + zzAction = -1; + + zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL; + + zzState = ZZ_LEXSTATE[zzLexicalState]; + + + zzForAction: { + while (true) { + + if (zzCurrentPosL < zzEndReadL) + zzInput = zzBufferL[zzCurrentPosL++]; + else if (zzAtEOF) { + zzInput = YYEOF; + break zzForAction; + } + else { + // store back cached positions + zzCurrentPos = zzCurrentPosL; + zzMarkedPos = zzMarkedPosL; + boolean eof = zzRefill(); + // get translated positions and possibly new buffer + zzCurrentPosL = zzCurrentPos; + zzMarkedPosL = zzMarkedPos; + zzBufferL = zzBuffer; + zzEndReadL = zzEndRead; + if (eof) { + zzInput = YYEOF; + break zzForAction; + } + else { + zzInput = zzBufferL[zzCurrentPosL++]; + } + } + int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ]; + if (zzNext == -1) break zzForAction; + zzState = zzNext; + + int zzAttributes = zzAttrL[zzState]; + if ( (zzAttributes & 1) == 1 ) { + zzAction = zzState; + zzMarkedPosL = zzCurrentPosL; + if ( (zzAttributes & 8) == 8 ) break zzForAction; + } + + } + } + + // store back cached position + zzMarkedPos = zzMarkedPosL; + + switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) { + case 17: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found Gaussian 98"); + yybegin(ITER); + return new Symbol(GaussianSym.FOUNDITER); + } + case 19: break; + case 12: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found RHF"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 20: break; + case 8: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found rhf"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 21: break; + case 2: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found hf"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 22: break; + case 16: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found geom"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 23: break; + case 10: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found opt "); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 24: break; + case 7: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found RHF"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 25: break; + case 3: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found G1"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 26: break; + case 18: + { yybegin(IGNOREALL); + return new Symbol(GaussianSym.SCFDONE); + } + case 27: break; + case 13: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found uhf"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 28: break; + case 9: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found uhf"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 29: break; + case 11: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP2"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 30: break; + case 4: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found rhf"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 31: break; + case 15: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found scf="); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype2")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(IGNOREALL); + return new Symbol(GaussianSym.RUNTYP1); + } + case 32: break; + case 6: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP4"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 33: break; + case 5: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP2"); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 34: break; + case 14: + { if (Settings.DEBUG) System.out.println("GaussianFlex: Found opt "); + if (Settings.DEBUG) System.out.println(yytext()); + try{ + PrintStream temp = new PrintStream(new FileOutputStream("runtype1")); + temp.print(yytext()); + System.out.println(yytext());} + catch (IOException ie){ System.out.println("Error in Gaussian Lexer");} + + yybegin(ITER1); + return new Symbol(GaussianSym.RUNTYP); + } + case 35: break; + case 1: + { + } + case 36: break; + default: + if (zzInput == YYEOF && zzStartRead == zzCurrentPos) { + zzAtEOF = true; + zzDoEOF(); + { return new java_cup.runtime.Symbol(GaussianSym.EOF); } + } + else { + zzScanError(ZZ_NO_MATCH); + } + } + } + } + + /** + * Converts an int token code into the name of the + * token by reflection on the cup symbol class/interface sym + * + * This code was contributed by Karl Meissner <[email protected]> + */ + private String getTokenName(int token) { + try { + java.lang.reflect.Field [] classFields = GaussianSym.class.getFields(); + for (int i = 0; i < classFields.length; i++) { + if (classFields[i].getInt(null) == token) { + return classFields[i].getName(); + } + } + } catch (Exception e) { + e.printStackTrace(System.err); + } + + return "UNKNOWN TOKEN"; + } + + /** + * Same as next_token but also prints the token to standard out + * for debugging. + * + * This code was contributed by Karl Meissner <[email protected]> + */ + public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException { + java_cup.runtime.Symbol s = next_token(); + System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--"); + return s; + } + + /** + * Runs the scanner on input files. + * + * This is a standalone scanner, it will print any unmatched + * text to System.out unchanged. + * + * @param argv the command line, contains the filenames to run + * the scanner on. + */ + public static void main(String argv[]) { + if (argv.length == 0) { + System.out.println("Usage : java GaussianLexer <inputfile>"); + } + else { + for (int i = 0; i < argv.length; i++) { + GaussianLexer scanner = null; + try { + scanner = new GaussianLexer( new java.io.FileReader(argv[i]) ); + while ( !scanner.zzAtEOF ) scanner.next_token(); + } + catch (java.io.FileNotFoundException e) { + System.out.println("File not found : \""+argv[i]+"\""); + } + catch (java.io.IOException e) { + System.out.println("IO error scanning file \""+argv[i]+"\""); + System.out.println(e); + } + catch (Exception e) { + System.out.println("Unexpected exception:"); + e.printStackTrace(); + } + } + } + } + + +} http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java new file mode 100644 index 0000000..ea61ef8 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java @@ -0,0 +1,187 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.gaussian; + + +import java_cup.runtime.lr_parser; +import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser; + +import java.io.FileReader; +import java.util.HashMap; + + +public class GaussianParser extends java_cup.runtime.lr_parser implements GridChemQueueParser { + + /** Default constructor. */ + public GaussianParser() {super();} + + /** Constructor which sets the default scanner. */ + public GaussianParser(java_cup.runtime.Scanner s) {super(s);} + + /** + * Constructor which uses a file reader. + */ + public GaussianParser(final FileReader fileReader) { + super(new GaussianLexer(fileReader)); + } + + + /** Production table. */ + protected static final short _production_table[][] = + lr_parser.unpackFromStrings(new String[]{ + "\000\003\000\002\003\003\000\002\002\004\000\002\004" + + "\005"}); + + /** Access to production table. */ + public short[][] production_table() {return _production_table;} + + /** Parse-action table. */ + protected static final short[][] _action_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\004\004\005\001\002\000\004\002\001\001" + + "\002\000\004\006\010\001\002\000\004\002\007\001\002" + + "\000\004\002\000\001\002\000\004\007\011\001\002\000" + + "\004\002\uffff\001\002"}); + + /** Access to parse-action table. */ + public short[][] action_table() {return _action_table;} + + /** <code>reduce_goto</code> table. */ + protected static final short[][] _reduce_table = + lr_parser.unpackFromStrings(new String[]{ + "\000\007\000\006\003\005\004\003\001\001\000\002\001" + + "\001\000\002\001\001\000\002\001\001\000\002\001\001" + + "\000\002\001\001\000\002\001\001"}); + + /** Access to <code>reduce_goto</code> table. */ + public short[][] reduce_table() {return _reduce_table;} + + /** Instance of action encapsulation class. */ + protected CUP$parser$actions action_obj; + + /** Action encapsulation object initializer. */ + protected void init_actions() + { + action_obj = new CUP$parser$actions(this); + } + + /** Invoke a user supplied parse action. */ + public java_cup.runtime.Symbol do_action( + int act_num, + java_cup.runtime.lr_parser parser, + java.util.Stack stack, + int top) + throws java.lang.Exception + { + /* call code in generated class */ + return action_obj.CUP$parser$do_action(act_num, parser, stack, top); + } + + /** Indicates start state. */ + public int start_state() {return 0;} + /** Indicates start production. */ + public int start_production() {return 1;} + + /** <code>EOF</code> Symbol index. */ + public int EOF_sym() {return 0;} + + /** <code>error</code> Symbol index. */ + public int error_sym() {return 1;} + + @Override + public HashMap<String, String> getParsedData() throws Exception { + parse(); + return null; + } +} + +/** Cup generated class to encapsulate user supplied action code.*/ +class CUP$parser$actions { + + + //__________________________________ + public static boolean DEBUG = true; + + + private final GaussianParser GaussianParser; + + /** Constructor */ + CUP$parser$actions(GaussianParser GaussianParser) { + this.GaussianParser = GaussianParser; + } + + /** Method with the actual generated action code. */ + public final java_cup.runtime.Symbol CUP$parser$do_action( + int CUP$parser$act_num, + java_cup.runtime.lr_parser CUP$parser$parser, + java.util.Stack CUP$parser$stack, + int CUP$parser$top) + throws java.lang.Exception + { + /* Symbol object for return from actions */ + java_cup.runtime.Symbol CUP$parser$result; + + /* select the action based on the action number */ + switch (CUP$parser$act_num) + { + /*. . . . . . . . . . . . . . . . . . . .*/ + case 2: // scfintro ::= FOUNDITER RUNTYP RUNTYP1 + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gaussian: found FOUNDITER "); + CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 1: // $START ::= startpt EOF + { + Object RESULT = null; + int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left; + int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right; + Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value; + RESULT = start_val; + CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + /* ACCEPT */ + CUP$parser$parser.done_parsing(); + return CUP$parser$result; + + /*. . . . . . . . . . . . . . . . . . . .*/ + case 0: // startpt ::= scfintro + { + Object RESULT = null; + if (DEBUG) System.out.println("CUP:gaussian: end of parse tree "); + + + CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT); + } + return CUP$parser$result; + + /* . . . . . .*/ + default: + throw new Exception( + "Invalid action number found in internal parse table"); + + } + } +} + http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java ---------------------------------------------------------------------- diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java new file mode 100644 index 0000000..25f22f0 --- /dev/null +++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java @@ -0,0 +1,37 @@ +/* +* +* Licensed to the Apache Software Foundation (ASF) under one +* or more contributor license agreements. See the NOTICE file +* distributed with this work for additional information +* regarding copyright ownership. The ASF licenses this file +* to you under the Apache License, Version 2.0 (the +* "License"); you may not use this file except in compliance +* with the License. You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, +* software distributed under the License is distributed on an +* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +* KIND, either express or implied. See the License for the +* specific language governing permissions and limitations +* under the License. +* +*/ +package org.apache.airavata.datacat.parsers.gridchem.gaussian; +//---------------------------------------------------- +// The following code was generated by CUP v0.10k +// Wed Sep 10 09:00:14 IST 2014 +//---------------------------------------------------- + +/** CUP generated class containing symbol constants. */ +public class GaussianSym { + /* terminals */ + public static final int RUNTYP = 4; + public static final int SCFDONE = 3; + public static final int error = 1; + public static final int FOUNDITER = 2; + public static final int RUNTYP1 = 5; + public static final int EOF = 0; +} +
