This is an automated email from the ASF dual-hosted git repository.
smarru pushed a change to branch master
in repository https://gitbox.apache.org/repos/asf/airavata.git.
from 2a3302c Added a new test gateway with develop airavata server for SGA
class student project
add a68ff57 Initial API server framework
add c3644ef Implementing Experiment and Application creation APIs
add 98afe91 Implemented Orchestrator to accept messages from launch queue
and create tasks and processes for experiments
add c4a3a05 Adding task microservices for each task type
add e96bced Adding task microservices for each task type - v2
add f800a63 Support to async task execution to avoid task being executed
by the kafka consumer thread
add 04f88bc Publishing events of a task to a single partition to achieve
ordered delivery
add 14a62f9 Implementing the event sink to perisit task states to the
database
add 56bb2fa Compute resource operations to decouple the communication
between tasks and compute resources
add fa3a242 Restructuring modules and fixing docker builds
add 4268067 Exposing port 8080 of api-server container
add da921e9 Adding kubernetes scripts to deploy microservices on
kubernetes
add 549ae48 Adding API server endpoint to accept process status
add 4e27cb5 Adding get all method to API server resources
add e1e09b8 Web console initial commit
add 2d18e15 Adding Experiment and App Interface creation functionality to
Web Console
add e1d73b5 Adding Experiment detail pages
add 95fb8d4 Added task event view console
add 4f19f5c Adding setup page to configure API Server endpoint
add 9b8c097 Fixing bugs in task execution processes
add cb4438f Uploading experiment outputs to Data Store
add 421fd4a Docker file to build console docker image
add 7b16ba6 Externalizing db username and password
add 67de113 Minor improvements
add 70076aa Adding dependency management
add 35ef652 Adding license headers
add 3077522 Updated readme
new 88acdf1 Merge pull request #135 from DImuthuUpe/master
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
sandbox/airavata-kubernetes/Design Document.pdf | Bin 0 -> 566742 bytes
sandbox/airavata-kubernetes/User Guide.pdf | Bin 0 -> 532940 bytes
.../modules/api-resource/pom.xml | 49 +
.../application/ApplicationDeploymentResource.java | 100 +
.../application/ApplicationIfaceResource.java | 92 +
.../application/ApplicationInputResource.java | 79 +
.../application/ApplicationModuleResource.java | 70 +
.../application/ApplicationOutputResource.java | 68 +
.../k8s/api/resources/compute/ComputeResource.java | 90 +
.../k8s/api/resources/data/DataEntryResource.java | 60 +
.../experiment/ExperimentInputResource.java | 90 +
.../experiment/ExperimentOutputResource.java | 80 +
.../resources/experiment/ExperimentResource.java | 168 +
.../experiment/ExperimentStatusResource.java | 79 +
.../k8s/api/resources/process/ProcessResource.java | 125 +
.../resources/process/ProcessStatusResource.java | 107 +
.../k8s/api/resources/task/TaskParamResource.java | 60 +
.../k8s/api/resources/task/TaskResource.java | 163 +
.../k8s/api/resources/task/TaskStatusResource.java | 99 +
.../modules/compute-resource-api/pom.xml | 61 +
.../k8s/compute/api/ComputeOperations.java | 32 +
.../airavata/k8s/compute/api/ExecutionResult.java | 60 +
.../k8s/compute/impl/MockComputeOperation.java | 68 +
.../k8s/compute/impl/SSHComputeOperations.java | 302 +
.../modules/microservices/api-server/pom.xml | 162 +
.../airavata/k8s/api/server/Application.java | 66 +
.../k8s/api/server/ServerRuntimeException.java | 40 +
.../ApplicationDeploymentController.java | 60 +
.../controller/ApplicationInterfaceController.java | 59 +
.../controller/ApplicationModuleController.java | 60 +
.../controller/ComputeResourceController.java | 59 +
.../api/server/controller/DataStoreController.java | 71 +
.../server/controller/ExperimentController.java | 64 +
.../api/server/controller/ProcessController.java | 59 +
.../k8s/api/server/controller/TaskController.java | 65 +
.../model/application/ApplicationDeployment.java | 109 +
.../server/model/application/ApplicationInput.java | 116 +
.../model/application/ApplicationInterface.java | 100 +
.../model/application/ApplicationModule.java | 73 +
.../model/application/ApplicationOutput.java | 108 +
.../k8s/api/server/model/commons/ErrorModel.java | 108 +
.../server/model/compute/ComputeResourceModel.java | 96 +
.../k8s/api/server/model/data/DataStoreModel.java | 88 +
.../api/server/model/experiment/Experiment.java | 168 +
.../model/experiment/ExperimentInputData.java | 114 +
.../model/experiment/ExperimentOutputData.java | 106 +
.../server/model/experiment/ExperimentStatus.java | 99 +
.../k8s/api/server/model/job/JobModel.java | 168 +
.../k8s/api/server/model/job/JobStatus.java | 109 +
.../k8s/api/server/model/process/ProcessModel.java | 135 +
.../api/server/model/process/ProcessStatus.java | 124 +
.../k8s/api/server/model/task/TaskModel.java | 190 +
.../k8s/api/server/model/task/TaskParam.java | 82 +
.../k8s/api/server/model/task/TaskStatus.java | 121 +
.../ApplicationDeploymentRepository.java | 36 +
.../repository/ApplicationIfaceRepository.java | 36 +
.../repository/ApplicationInputRepository.java | 32 +
.../repository/ApplicationModuleRepository.java | 36 +
.../repository/ApplicationOutputRepository.java | 32 +
.../api/server/repository/ComputeRepository.java | 36 +
.../api/server/repository/DataStoreRepository.java | 36 +
.../repository/ExperimentInputDataRepository.java | 32 +
.../repository/ExperimentOutputDataRepository.java | 35 +
.../server/repository/ExperimentRepository.java | 35 +
.../repository/ExperimentStatusRepository.java | 32 +
.../api/server/repository/ProcessRepository.java | 35 +
.../server/repository/ProcessStatusRepository.java | 32 +
.../api/server/repository/TaskParamRepository.java | 32 +
.../k8s/api/server/repository/TaskRepository.java | 35 +
.../server/repository/TaskStatusRepository.java | 36 +
.../service/ApplicationDeploymentService.java | 87 +
.../server/service/ApplicationIfaceService.java | 109 +
.../server/service/ApplicationModuleService.java | 69 +
.../api/server/service/ComputeResourceService.java | 70 +
.../k8s/api/server/service/ExperimentService.java | 149 +
.../k8s/api/server/service/ProcessService.java | 99 +
.../k8s/api/server/service/TaskService.java | 109 +
.../api/server/service/data/DataStoreService.java | 71 +
.../server/service/messaging/MessagingService.java | 42 +
.../api/server/service/messaging/SenderConfig.java | 64 +
.../api/server/service/util/ToResourceUtil.java | 305 +
.../src/main/resources/application.properties | 5 +
.../api-server/src/main/resources/application.yml | 4 +
.../src/main/resources/docker/Dockerfile | 6 +
.../modules/microservices/event-sink/pom.xml | 151 +
.../org/apache/airavata/k8s/sink/Application.java | 49 +
.../airavata/k8s/sink/messaging/KafkaReceiver.java | 53 +
.../airavata/k8s/sink/messaging/KafkaSender.java | 43 +
.../k8s/sink/messaging/ReceiverConfig.java | 85 +
.../airavata/k8s/sink/messaging/SenderConfig.java | 69 +
.../k8s/sink/service/EventPersistingService.java | 56 +
.../src/main/resources/application.properties | 4 +
.../event-sink/src/main/resources/application.yml | 4 +
.../modules/microservices/task-scheduler/pom.xml | 151 +
.../org/apache/airavata/k8s/gfac/Application.java | 49 +
.../k8s/gfac/core/ProcessLifeCycleManager.java | 124 +
.../airavata/k8s/gfac/messaging/KafkaReceiver.java | 53 +
.../airavata/k8s/gfac/messaging/KafkaSender.java | 39 +
.../k8s/gfac/messaging/ReceiverConfig.java | 109 +
.../airavata/k8s/gfac/messaging/SenderConfig.java | 69 +
.../airavata/k8s/gfac/service/WorkerService.java | 88 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../tasks/egress-staging-task/pom.xml | 156 +
.../airavata/k8s/task/egress/Application.java | 49 +
.../k8s/task/egress/messaging/KafkaReceiver.java | 45 +
.../k8s/task/egress/messaging/KafkaSender.java | 43 +
.../k8s/task/egress/messaging/ReceiverConfig.java | 85 +
.../k8s/task/egress/messaging/SenderConfig.java | 69 +
.../task/egress/service/TaskExecutionService.java | 183 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../microservices/tasks/env-cleanup-task/pom.xml | 156 +
.../airavata/k8s/task/cleanup/Application.java | 49 +
.../k8s/task/cleanup/messaging/KafkaReceiver.java | 45 +
.../k8s/task/cleanup/messaging/KafkaSender.java | 43 +
.../k8s/task/cleanup/messaging/ReceiverConfig.java | 85 +
.../k8s/task/cleanup/messaging/SenderConfig.java | 69 +
.../task/cleanup/service/TaskExecutionService.java | 153 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../microservices/tasks/env-setup-task/pom.xml | 157 +
.../airavata/k8s/task/env/setup/Application.java | 49 +
.../task/env/setup/messaging/KafkaReceiver.java | 45 +
.../k8s/task/env/setup/messaging/KafkaSender.java | 43 +
.../task/env/setup/messaging/ReceiverConfig.java | 85 +
.../k8s/task/env/setup/messaging/SenderConfig.java | 69 +
.../env/setup/service/TaskExecutionService.java | 153 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../tasks/ingress-staging-task/pom.xml | 156 +
.../airavata/k8s/task/ingress/Application.java | 49 +
.../k8s/task/ingress/messaging/KafkaReceiver.java | 45 +
.../k8s/task/ingress/messaging/KafkaSender.java | 43 +
.../k8s/task/ingress/messaging/ReceiverConfig.java | 85 +
.../k8s/task/ingress/messaging/SenderConfig.java | 69 +
.../task/ingress/service/TaskExecutionService.java | 126 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../tasks/job-submission-task/pom.xml | 156 +
.../apache/airavata/k8s/task/job/Application.java | 49 +
.../k8s/task/job/messaging/KafkaReceiver.java | 45 +
.../k8s/task/job/messaging/KafkaSender.java | 43 +
.../k8s/task/job/messaging/ReceiverConfig.java | 85 +
.../k8s/task/job/messaging/SenderConfig.java | 69 +
.../k8s/task/job/service/TaskExecutionService.java | 160 +
.../src/main/resources/application.properties | 5 +
.../src/main/resources/application.yml | 4 +
.../microservices/workflow-generator/pom.xml | 153 +
.../airavata/k8s/orchestrator/Application.java | 49 +
.../k8s/orchestrator/messaging/KafkaReceiver.java | 46 +
.../k8s/orchestrator/messaging/KafkaSender.java | 39 +
.../k8s/orchestrator/messaging/ReceiverConfig.java | 81 +
.../k8s/orchestrator/messaging/SenderConfig.java | 69 +
.../service/ExperimentLaunchService.java | 259 +
.../src/main/resources/application.properties | 4 +
.../src/main/resources/application.yml | 4 +
sandbox/airavata-kubernetes/pom.xml | 85 +
sandbox/airavata-kubernetes/readme.txt | 21 +
.../scripts/k8s/api-server/api-server-dep.yml | 26 +
.../scripts/k8s/api-server/api-server-svc.yml | 14 +
.../airavata-kubernetes/scripts/k8s/db-service.yml | 30 +
.../scripts/k8s/event-sink/event-sink-dep.yml | 21 +
.../scripts/k8s/kafka-service.yml | 30 +
.../k8s/task-scheduler/task-secheduler-dep.yml | 21 +
.../egress-staging-task-dep.yml | 21 +
.../env-cleanup-task/env-cleanup-task-dep.yml | 21 +
.../tasks/env-setup-task/env-setup-task-dep.yml | 21 +
.../ingress-staging-task-dep.yml | 21 +
.../job-submission-task-dep.yml | 21 +
.../workflow-generator/workflow-generator-dep.yml | 21 +
.../web-console/.angular-cli.json | 64 +
.../airavata-kubernetes/web-console/.editorconfig | 13 +
sandbox/airavata-kubernetes/web-console/.gitignore | 42 +
sandbox/airavata-kubernetes/web-console/README.md | 32 +
.../web-console/docker/Dockerfile | 2 +
.../web-console/e2e/app.e2e-spec.ts | 14 +
.../airavata-kubernetes/web-console/e2e/app.po.ts | 11 +
.../web-console/e2e/tsconfig.e2e.json | 14 +
.../airavata-kubernetes/web-console/karma.conf.js | 33 +
.../web-console/package-lock.json | 9608 ++++++++++++++++++++
.../airavata-kubernetes/web-console/package.json | 49 +
.../web-console/protractor.conf.js | 28 +
.../web-console/src/app/app.component.css} | 0
.../web-console/src/app/app.component.html | 20 +
.../web-console/src/app/app.component.spec.ts | 27 +
.../web-console/src/app/app.component.ts | 13 +
.../web-console/src/app/app.module.ts | 42 +
.../web-console/src/app/app.routing.ts | 14 +
.../app-dep/list/app.dep.list.component.ts | 90 +
.../src/app/components/app-dep/list/list.html | 77 +
.../app-iface/list/app.iface.list.component.ts | 88 +
.../src/app/components/app-iface/list/list.html | 111 +
.../app-module/list/app.module.list.component.ts | 64 +
.../src/app/components/app-module/list/list.html | 56 +
.../compute/list/compute.list.component.ts | 66 +
.../src/app/components/compute/list/list.html | 69 +
.../components/dashboard/dashboard.component.ts | 12 +
.../src/app/components/dashboard/dashboard.html | 45 +
.../app/components/dashboard/dashboard.routes.ts | 50 +
.../app/components/experiment/detail/detail.html | 124 +
.../experiment/detail/experiment.detail.ts | 64 +
.../experiment/list/experiment.list.component.ts | 141 +
.../src/app/components/experiment/list/list.html | 117 +
.../src/app/components/process/detail/detail.html | 107 +
.../process/detail/process.detail.component.ts | 47 +
.../src/app/components/setup/setup.component.ts | 25 +
.../src/app/components/setup/setup.html | 13 +
.../application/application.deployment.model.ts | 27 +
.../models/application/application.iface.model.ts | 29 +
.../models/application/application.ipnput.model.ts | 22 +
.../models/application/application.module.model.ts | 21 +
.../models/application/application.output.model.ts | 21 +
.../app/models/compute/compute.resource.model.ts | 30 +
.../src/app/models/data/data.entry.model.ts | 9 +
.../models/experiment/experiment.input.model.ts | 22 +
.../src/app/models/experiment/experiment.model.ts | 44 +
.../models/experiment/experiment.output.model.ts | 20 +
.../models/experiment/experiment.status.model.ts | 10 +
.../src/app/models/process/process.model.ts | 20 +
.../src/app/models/process/process.status.model.ts | 15 +
.../web-console/src/app/models/task/task.model.ts | 41 +
.../src/app/models/task/task.param.model.ts | 18 +
.../src/app/models/task/task.status.model.ts | 24 +
.../web-console/src/app/services/api.service.ts | 46 +
.../src/app/services/app.module.service.ts | 23 +
.../src/app/services/application.iface.service.ts | 23 +
.../src/app/services/compute.service.ts | 22 +
.../src/app/services/deployment.service.ts | 21 +
.../src/app/services/experiment.service.ts | 31 +
.../src/app/services/process.service.ts | 28 +
.../web-console/src/app/services/task.service.ts | 25 +
.../web-console/src/assets/.gitkeep} | 0
.../src/environments/environment.prod.ts | 3 +
.../web-console/src/environments/environment.ts | 8 +
.../web-console/src/favicon.ico | Bin 0 -> 5430 bytes
.../airavata-kubernetes/web-console/src/index.html | 16 +
.../airavata-kubernetes/web-console/src/main.ts | 12 +
.../web-console/src/polyfills.ts | 76 +
.../airavata-kubernetes/web-console/src/styles.css | 1 +
.../airavata-kubernetes/web-console/src/test.ts | 32 +
.../web-console/src/tsconfig.app.json | 13 +
.../web-console/src/tsconfig.spec.json | 20 +
.../web-console/src/typings.d.ts | 5 +
.../airavata-kubernetes/web-console/tsconfig.json | 19 +
.../airavata-kubernetes/web-console/tslint.json | 141 +
246 files changed, 24487 insertions(+)
create mode 100644 sandbox/airavata-kubernetes/Design Document.pdf
create mode 100644 sandbox/airavata-kubernetes/User Guide.pdf
create mode 100644 sandbox/airavata-kubernetes/modules/api-resource/pom.xml
create mode 100644
sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationDeploymentResource.java
create mode 100644
sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationIfaceResource.java
create mode 100644
sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationInputResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationModuleResource.java
create mode 100644
sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/application/ApplicationOutputResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/compute/ComputeResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/data/DataEntryResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentInputResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentOutputResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/experiment/ExperimentStatusResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/process/ProcessResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/process/ProcessStatusResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskParamResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskResource.java
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sandbox/airavata-kubernetes/modules/api-resource/src/main/java/org/apache/airavata/k8s/api/resources/task/TaskStatusResource.java
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sandbox/airavata-kubernetes/modules/compute-resource-api/pom.xml
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sandbox/airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/api/ComputeOperations.java
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sandbox/airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/api/ExecutionResult.java
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sandbox/airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/impl/MockComputeOperation.java
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sandbox/airavata-kubernetes/modules/compute-resource-api/src/main/java/org/apache/airavata/k8s/compute/impl/SSHComputeOperations.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/pom.xml
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/Application.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/ServerRuntimeException.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationDeploymentController.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationInterfaceController.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ApplicationModuleController.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ComputeResourceController.java
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sandbox/airavata-kubernetes/modules/microservices/api-server/src/main/java/org/apache/airavata/k8s/api/server/controller/ExperimentController.java
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