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machristie pushed a change to branch group-based-auth
in repository https://gitbox.apache.org/repos/asf/airavata.git.
from 4893e91 Merge pull request #187 from tilaks26/AIRAVATA-2719
add 30d7f24 Adding default constructor
add b589bee Removing JPA annotations and unused imports for primary key
classes
add a6ea043 Removing unused imports
add 9e6963c Updating the entity and primary key classes for workflow
catalog
add 98885d7 Add repository class and override interface methods
add 10a01ab Add @Override for repcatalog repositories methods
add 84d5ca0 Moved appcatalog's Initialize.java to proper folder
add 4de1568 Adding SQL resources and test
add f5552ee Making necessary changed to appcatalog entities and
repositories
add a1619db Fixing build errors
add cbcc08c Making changes to the tests
add 5642246 Making changes to method calls in RegistryServerHandler
add 17b4034 Making changes to tests
new 0646f2d Merge pull request #188 from tilaks26/group-based-auth
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Summary of changes:
.../entities/appcatalog/AppModuleMappingPK.java | 2 -
.../entities/appcatalog/ApplicationInputPK.java | 2 -
.../entities/appcatalog/ApplicationOutputPK.java | 2 -
.../core/entities/appcatalog/BatchQueuePK.java | 8 --
.../appcatalog/BatchQueueResourcePolicyPK.java | 4 -
.../appcatalog/ComputeResourceFileSystemPK.java | 8 --
.../appcatalog/ComputeResourcePolicyPK.java | 4 -
.../appcatalog/ComputeResourcePreferencePK.java | 8 --
.../appcatalog/DataMovementInterfacePK.java | 9 --
.../appcatalog/GlobusGkEndpointEntity.java | 32 +++--
.../entities/appcatalog/GlobusGkEndpointPK.java | 6 -
.../entities/appcatalog/GridftpEndpointEntity.java | 35 ++++--
.../entities/appcatalog/GridftpEndpointPK.java | 6 -
.../appcatalog/GroupComputeResourcePrefPK.java | 7 --
.../appcatalog/GroupResourceProfilePK.java | 4 -
.../GroupSSHAccountProvisionerConfigPK.java | 10 --
.../entities/appcatalog/GsisshExportEntity.java | 32 +++--
.../core/entities/appcatalog/GsisshExportPK.java | 6 -
.../appcatalog/GsisshPostjobcommandEntity.java | 31 +++--
.../appcatalog/GsisshPostjobcommandPK.java | 6 -
.../appcatalog/GsisshPrejobcommandEntity.java | 31 +++--
.../entities/appcatalog/GsisshPrejobcommandPK.java | 6 -
.../appcatalog/JobManagerCommandEntity.java | 34 ++++--
.../entities/appcatalog/JobManagerCommandPK.java | 6 -
.../appcatalog/JobSubmissionInterfacePK.java | 8 --
.../core/entities/appcatalog/ModuleLoadCmdPK.java | 2 -
.../appcatalog/ParallelismCommandEntity.java | 26 +++-
.../entities/appcatalog/ParallelismCommandPK.java | 6 -
.../core/entities/appcatalog/PostjobCommandPK.java | 2 -
.../core/entities/appcatalog/PrejobCommandPK.java | 2 -
.../SSHAccountProvisionerConfigurationPK.java | 8 --
.../appcatalog/StorageInterfaceEntity.java | 31 +++--
.../entities/appcatalog/StorageInterfacePK.java | 6 -
.../entities/appcatalog/StoragePreferencePK.java | 8 --
.../UserComputeResourcePreferencePK.java | 2 -
.../entities/appcatalog/UserResourceProfilePK.java | 2 -
.../appcatalog/UserStoragePreferencePK.java | 2 -
.../entities/replicacatalog/ConfigurationPK.java | 5 +-
.../replicacatalog/DataProductMetadataPK.java | 5 +-
.../replicacatalog/DataReplicaMetadataPK.java | 5 +-
.../workflowcatalog/ComponentStatusEntity.java | 12 +-
.../core/entities/workflowcatalog/EdgeEntity.java | 55 +++++----
.../core/entities/workflowcatalog/EdgePK.java | 6 -
.../core/entities/workflowcatalog/NodeEntity.java | 39 +++---
.../core/entities/workflowcatalog/NodePK.java | 6 -
.../core/entities/workflowcatalog/PortEntity.java | 39 +++---
.../core/entities/workflowcatalog/PortPK.java | 6 -
.../entities/workflowcatalog/WorkflowEntity.java | 40 +++++--
.../workflowcatalog/WorkflowInputEntity.java | 116 +++++++++---------
.../entities/workflowcatalog/WorkflowInputPK.java | 20 ++--
.../workflowcatalog/WorkflowOutputEntity.java | 93 ++++++++-------
.../entities/workflowcatalog/WorkflowOutputPK.java | 20 ++--
.../workflowcatalog/WorkflowStatusEntity.java | 39 +++---
.../entities/workflowcatalog/WorkflowStatusPK.java | 6 -
.../appcatalog/ComputeResourceRepository.java | 6 +-
.../appcatalog/ResourceJobManagerRepository.java | 16 +--
.../replicacatalog/DataProductRepository.java | 8 ++
.../DataReplicaLocationRepository.java | 5 +
.../workflowcatalog/ComponentStatusRepository.java | 37 ------
.../workflowcatalog/EdgeRepository.java | 38 ------
.../workflowcatalog/NodeRepository.java | 38 ------
.../workflowcatalog/PortRepository.java | 37 ------
.../WorkflowCatAbstractRepository.java} | 13 +-
.../workflowcatalog/WorkflowRepository.java | 126 +++++++++++++++++++-
.../workflowcatalog/WorkflowStatusRepository.java | 37 ------
.../airavata/registry/core/utils/DBConstants.java | 43 +------
...gJPAUtils.java => WorkflowCatalogJPAUtils.java} | 37 +++---
.../registry/core/utils/QueryConstants.java | 10 +-
...CatalogUtils.java => WorkflowCatalogUtils.java} | 2 +-
.../src/main/resources/META-INF/persistence.xml | 8 --
.../src/main/resources/workflowcatalog-derby.sql | 0
.../src/main/resources/workflowcatalog-mysql.sql | 0
.../core/repositories/WorkflowRepositoryTest.java | 132 ---------------------
.../ApplicationDeploymentRepositoryTest.java | 2 +-
.../ApplicationInterfaceRepositoryTest.java | 3 +-
.../appcatalog/ComputeResourceRepositoryTest.java | 2 +-
.../appcatalog/GatewayProfileRepositoryTest.java | 2 +-
.../GroupResourceProfileRepositoryTest.java | 2 +-
.../UserResourceProfileRepositoryTest.java | 2 +-
.../{ => appcatalog}/util/Initialize.java | 2 +-
.../replicacatalog/util/Initialize.java | 8 +-
.../workflowcatalog/WorkflowRepositoryTest.java | 111 +++++++++++++++++
.../util/Initialize.java | 84 ++++++-------
.../api/service/handler/RegistryServerHandler.java | 30 ++---
84 files changed, 800 insertions(+), 957 deletions(-)
delete mode 100644
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workflowcatalog/ComponentStatusRepository.java
delete mode 100644
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workflowcatalog/EdgeRepository.java
delete mode 100644
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workflowcatalog/NodeRepository.java
delete mode 100644
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workflowcatalog/PortRepository.java
copy
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/{replicacatalog/RepCatAbstractRepository.java
=> workflowcatalog/WorkflowCatAbstractRepository.java} (89%)
delete mode 100644
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/workflowcatalog/WorkflowStatusRepository.java
copy
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/utils/JPAUtil/{RepCatalogJPAUtils.java
=> WorkflowCatalogJPAUtils.java} (67%)
copy
modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/utils/{AppCatalogUtils.java
=> WorkflowCatalogUtils.java} (96%)
copy modules/{registry/registry-core =>
registry-refactoring}/src/main/resources/workflowcatalog-derby.sql (100%)
copy modules/{registry/registry-core =>
registry-refactoring}/src/main/resources/workflowcatalog-mysql.sql (100%)
delete mode 100644
modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/WorkflowRepositoryTest.java
rename
modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/{
=> appcatalog}/util/Initialize.java (99%)
create mode 100644
modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/workflowcatalog/WorkflowRepositoryTest.java
copy
modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/{replicacatalog
=> workflowcatalog}/util/Initialize.java (79%)
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