This is an automated email from the ASF dual-hosted git repository. dimuthuupe pushed a commit to branch main in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
commit 001824573850a54dc2f4e0eb0aa734719a305cd1 Merge: eb91193 d588795 Author: Dimuthu Wannipurage <[email protected]> AuthorDate: Thu Aug 22 16:18:25 2024 -0400 Merge pull request #13 from srirampc/main Re-organize code and added project.toml .flake8 | 3 + .gitignore | 7 + {atlas => airavata_cerebrum}/__init__.py | 0 airavata_cerebrum/atlas/README.md | 228 ++++ .../atlas}/__init__.py | 0 .../atlas/data}/__init__.py | 0 airavata_cerebrum/atlas/data/abc_mouse.py | 827 +++++++++++++ airavata_cerebrum/atlas/data/abm_celltypes.py | 332 ++++++ airavata_cerebrum/atlas/data/base.py | 137 +++ {atlas => airavata_cerebrum/atlas/data}/bicn.py | 0 .../atlas/data}/mouse_brain.py | 0 airavata_cerebrum/atlas/log/logging.py | 4 + .../atlas/model}/__init__.py | 0 airavata_cerebrum/atlas/model/builder.py | 153 +++ airavata_cerebrum/atlas/model/regions.py | 172 +++ .../atlas/operations}/__init__.py | 0 airavata_cerebrum/atlas/operations/netops.py | 166 +++ .../cybershuttle}/__init__.py | 0 .../cybershuttle/annotations}/__init__.py | 0 .../cybershuttle}/annotations/decorator.py | 0 atlas/abc_mouse.py | 569 --------- pyproject.toml | 52 + .../notebooks}/atlas2cellprop.ipynb | 1230 ++++++++++---------- .../notebooks}/merfish2model.ipynb | 46 +- scripts/build_network.py | 258 ++++ setup.py | 29 +- tests/abm_ct.py | 16 + tests/ct_workflow.json | 104 ++ 28 files changed, 3064 insertions(+), 1269 deletions(-)
