This is an automated email from the ASF dual-hosted git repository. dimuthuupe pushed a commit to branch main in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
commit c0adfb4ea6c112122b9050e499306d658023fa66 Merge: 0018245 e8b1155 Author: Dimuthu Wannipurage <[email protected]> AuthorDate: Thu Aug 29 20:39:50 2024 -0400 Merge pull request #23 from srirampc/main Connections to cell type and abc databases .gitignore | 2 + README.md | 17 + airavata_cerebrum/atlas/data/__init__.py | 3 + airavata_cerebrum/atlas/data/abc_mouse.py | 88 +- airavata_cerebrum/atlas/data/abm_celltypes.py | 175 +- airavata_cerebrum/atlas/data/base.py | 303 +- airavata_cerebrum/atlas/data/bicn.py | 2 +- airavata_cerebrum/atlas/model/builder.py | 6 +- airavata_cerebrum/atlas/model/mousev1.py | 73 + .../atlas/model/{regions.py => structure.py} | 28 +- airavata_cerebrum/atlas/operations/netops.py | 67 +- env_minimal.yml | 26 + environment.yml | 55 + pyproject.toml | 49 +- pyrcfg.json | 5 + scripts/build_network.py | 258 - tests/abm_ct.py | 150 +- tests/abm_ct/description/db_connect.json | 55 + tests/abm_ct/description/db_connect_output.json | 70667 +++++++++++++++++++ tests/abm_ct/description/db_location_map.json | 196 + tests/abm_ct/description/db_select_xform.json | 47 + .../abm_ct/description/db_select_xform_output.json | 17057 +++++ tests/abm_ct/description/network_desc_output.json | 7960 +++ tests/abm_ct/description/user_location_config.json | 52 + tests/config_net.py | 57 + tests/config_net/user_location_config.json | 52 + tests/ct_workflow.json | 104 - tests/validation_test.py | 118 + 28 files changed, 97007 insertions(+), 665 deletions(-)
