This is an automated email from the ASF dual-hosted git repository. smarru pushed a commit to branch main in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
commit b757e7ac5725069e3f8fda1511bdb42ad39798f2 Merge: c0adfb4 aa174b8 Author: Suresh Marru <[email protected]> AuthorDate: Thu Oct 3 18:03:57 2024 -0400 Merge pull request #24 from srirampc/main Connection to Syn. Phys. Database and V1L4 Notebook .flake8 | 6 +- .gitignore | 4 +- airavata_cerebrum/{atlas => }/README.md | 0 airavata_cerebrum/atlas/data/base.py | 292 - airavata_cerebrum/atlas/log/logging.py | 4 - airavata_cerebrum/atlas/model/builder.py | 153 - airavata_cerebrum/atlas/model/mousev1.py | 73 - airavata_cerebrum/atlas/model/structure.py | 160 - airavata_cerebrum/atlas/operations/netops.py | 191 - airavata_cerebrum/base.py | 49 + .../{atlas/data => dataset}/__init__.py | 1 + .../{atlas/data => dataset}/abc_mouse.py | 800 +- .../{atlas/data => dataset}/abm_celltypes.py | 208 +- airavata_cerebrum/dataset/ai_synphys.py | 172 + airavata_cerebrum/{atlas/data => dataset}/bicn.py | 1 - .../{atlas/data => dataset}/mouse_brain.py | 0 airavata_cerebrum/{atlas => model}/__init__.py | 0 airavata_cerebrum/model/builder.py | 45 + airavata_cerebrum/model/desc.py | 132 + airavata_cerebrum/model/structure.py | 764 + .../{atlas/model => operations}/__init__.py | 0 airavata_cerebrum/operations/abc_mouse.py | 76 + airavata_cerebrum/operations/abm_celltypes.py | 112 + airavata_cerebrum/operations/ai_synphys.py | 42 + airavata_cerebrum/operations/dict_filter.py | 122 + airavata_cerebrum/operations/json_filter.py | 182 + airavata_cerebrum/operations/netops.py | 44 + airavata_cerebrum/operations/xform.py | 74 + airavata_cerebrum/register.py | 102 + airavata_cerebrum/util/__init__.py | 5 + airavata_cerebrum/util/desc_config.py | 158 + airavata_cerebrum/util/io.py | 48 + .../{atlas/operations => view}/__init__.py | 0 airavata_cerebrum/view/tree.py | 462 + airavata_cerebrum/workflow.py | 124 + environment.yml => env_full.yml | 17 +- env_minimal.yml | 26 - environment.yml | 71 +- pyproject.toml | 33 +- pyrcfg.json | 5 - resources/notebooks/V1L4-Nest-Run.ipynb | 210 + resources/notebooks/V1L4-Notebook.ipynb | 13926 ++++ resources/notebooks/V1L4-Scratch.ipynb | 884 + resources/notebooks/atlas2cellprop.ipynb | 1541 +- resources/notebooks/bmtk_pointnet_run.py | 65 + 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