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yasith pushed a commit to branch cybershuttle-staging
in repository https://gitbox.apache.org/repos/asf/airavata.git
The following commit(s) were added to refs/heads/cybershuttle-staging by this
push:
new 4952fadca2 update projects in research-service DevDataInitializer.
4952fadca2 is described below
commit 4952fadca22eca3fec7f13e30aaf1cd308dd985f
Author: yasithdev <[email protected]>
AuthorDate: Tue Apr 8 14:43:37 2025 -0400
update projects in research-service DevDataInitializer.
---
.../service/config/DevDataInitializer.java | 68 +++++++++++++++-------
1 file changed, 47 insertions(+), 21 deletions(-)
diff --git
a/modules/research-framework/research-service/src/main/java/org/apache/airavata/research/service/config/DevDataInitializer.java
b/modules/research-framework/research-service/src/main/java/org/apache/airavata/research/service/config/DevDataInitializer.java
index 816fa83e72..e4a84c6cf3 100644
---
a/modules/research-framework/research-service/src/main/java/org/apache/airavata/research/service/config/DevDataInitializer.java
+++
b/modules/research-framework/research-service/src/main/java/org/apache/airavata/research/service/config/DevDataInitializer.java
@@ -18,7 +18,6 @@
package org.apache.airavata.research.service.config;
import java.util.HashSet;
-import java.util.Optional;
import java.util.Set;
import org.apache.airavata.research.service.enums.PrivacyEnum;
@@ -52,7 +51,7 @@ public class DevDataInitializer implements CommandLineRunner {
this.tagRepository = tagRepository;
}
- private void createProject(String name, String repoUrl, String
datasetName, String datasetUrl, String[] tags, String user) {
+ private void createProject(String name, String repoUrl, String
datasetName, String datasetUrl, String[] tags, String user) {
Set<Tag> tagSet = new HashSet<>();
for (String tag : tags) {
Tag t = tagRepository.findByValue(tag);
@@ -109,38 +108,65 @@ public class DevDataInitializer implements
CommandLineRunner {
}
createProject(
- "Allen / BMTK Workshop",
- "https://github.com/yasithdev/bmtk-workshop.git";,
- "Allen / BMTK Workshop Data",
- "allen-bmtk-workshop",
- new String[]{"allen", "bmtk", "workshop"},
+ "Bio-realistic model of primary visual cortex (V1) (Allen
Institute)",
+ "https://github.com/yasithdev/allen-v1.git";,
+ "Bio-realistic model of primary visual cortex (V1) (Allen
Institute)",
+ "allenai-v1",
+ new String[]{"allenai", "v1", "workshop"},
devUserEmail
);
createProject(
- "Allen / V1",
- "https://github.com/yasithdev/allen-v1.git";,
- "Allen / V1 Data",
- "allen-v1",
- new String[]{"allen", "v1", "workshop"},
+ "Apache Cerebrum: Flexible tool for constructing computational
neuroscience models from large public databases and brain atlases",
+ "https://github.com/srirampc/airavata-cerebrum";,
+ "Apache Cerebrum: Flexible tool for constructing computational
neuroscience models from large public databases and brain atlases",
+ "artisan-cerebrum",
+ new String[]{"artisan", "cerebrum", "workshop"},
devUserEmail
);
createProject(
- "BRAINML / OneHot HMMGLM",
- "https://github.com/yasithdev/onehot-hmmglm.git";,
- "BRAINML / OneHot HMMGLM Data",
+ "Large-scale brain model during awake and sleep states",
+ "https://github.com/bazhlab-ucsd/whole-brain-public";,
+ "Large-scale brain model during awake and sleep states",
+ "bazhlab-neurodata25",
+ new String[]{"bazhlab", "whole-brain", "workshop"},
+ devUserEmail
+ );
+
+ createProject(
+ "One-hot Generalized Linear Model for Switching Brain State
Discovery",
+ "https://github.com/JerrySoybean/onehot-hmmglm";,
+ "One-hot Generalized Linear Model for Switching Brain State
Discovery",
"brainml-onehot-hmmglm",
- new String[]{"brainml", "onehot", "workshop"},
+ new String[]{"brainml", "onehot-hmmglm", "workshop"},
+ devUserEmail
+ );
+
+ createProject(
+ "Biologically Constrained RNNs via Dale's Backpropagation and
Topologically-Informed Pruning",
+ "https://github.com/HChoiLab/biologicalRNNs";,
+ "Biologically Constrained RNNs via Dale's Backpropagation and
Topologically-Informed Pruning",
+ "hchoilab-biologicalRNNs",
+ new String[]{"hchoilab", "biologicalRNNs", "workshop"},
+ devUserEmail
+ );
+
+ createProject(
+ "NetFormer : Transformer model for neural connectivity",
+ "https://github.com/NeuroAIHub/NetFormer";,
+ "NetFormer : Transformer model for neural connectivity",
+ "neuroaihub-netformer",
+ new String[]{"neuroaihub", "netformer", "workshop"},
devUserEmail
);
createProject(
- "HChoiLab / Functional Network",
- "https://github.com/yasithdev/functional-network.git";,
- "HChoiLab / Functional Network Data",
- "hchoilab-functional-network",
- new String[]{"hchoilab", "functional network", "workshop"},
+ "Deep Learning in Neuroscience with torch_brain and
temporaldata",
+ "https://github.com/nerdslab/neurodata25_torchbrain_notebooks";,
+ "Deep Learning in Neuroscience with torch_brain and
temporaldata",
+ "nerdslab-neurodata25",
+ new String[]{"nerdslab", "neurodata25", "workshop"},
devUserEmail
);
}
