This is an automated email from the ASF dual-hosted git repository.
yasith pushed a change to branch cybershuttle-staging
in repository https://gitbox.apache.org/repos/asf/airavata.git
from e8f73d7a51 move old deployments into examples/, and app scripts into
dev-tools/app-scripts
add 50b71a954e move cybershuttle examples to cyber-shuttle org and add
links instead
No new revisions were added by this update.
Summary of changes:
examples/01_extending_airavata_agent/Dockerfile | 9 -
examples/01_extending_airavata_agent/Makefile | 10 -
examples/01_extending_airavata_agent/README.md | 13 -
examples/02_using_python_sdk/.gitignore | 2 -
.../data/alphafold2/Abeta42_Dimer.fasta | 4 -
.../02_using_python_sdk/data/amber/RAMP1.prmtop | 52609 -------
.../data/amber/RAMP1_equil.rst7 | Bin 1129976 -> 0 bytes
examples/02_using_python_sdk/data/amber/md.in | 9 -
.../data/gaussian/NOR0N-RAD21-freq.gjf | 89 -
examples/02_using_python_sdk/data/gromacs/md.mdp | 46 -
examples/02_using_python_sdk/data/gromacs/npt.gro | 93291 -----------
examples/02_using_python_sdk/data/gromacs/npt.tpr | Bin 4716544 -> 0 bytes
examples/02_using_python_sdk/data/namd/b4pull.pdb | 97198 ------------
.../data/namd/b4pull.restart.coor | Bin 2332708 -> 0 bytes
.../data/namd/b4pull.restart.vel | Bin 2332708 -> 0 bytes
.../data/namd/b4pull.restart.xsc | 3 -
.../data/namd/par_all36_water.prm | 115 -
.../data/namd/par_all36m_prot.prm | 3435 -
.../02_using_python_sdk/data/namd/pull_cpu.conf | 100 -
.../02_using_python_sdk/data/namd/pull_gpu.conf | 100 -
.../02_using_python_sdk/data/namd/structure.pdb | 97198 ------------
.../02_using_python_sdk/data/namd/structure.psf | 147335 ------------------
examples/02_using_python_sdk/data/sample.txt | 1 -
examples/02_using_python_sdk/experiment_sdk.ipynb | 401 -
.../02_using_python_sdk/molecular_dynamics.ipynb | 1706 -
.../02_using_python_sdk/namd_workshop_cpu.ipynb | 401 -
.../02_using_python_sdk/namd_workshop_gpu.ipynb | 401 -
examples/02_using_python_sdk/settings.ini | 17 -
examples/projects_using_airavata.md | 35 +
examples/python_sdk_experiment_tracking.md | 2 +
examples/python_sdk_jupyter_notebooks.md | 2 +
31 files changed, 39 insertions(+), 494493 deletions(-)
delete mode 100644 examples/01_extending_airavata_agent/Dockerfile
delete mode 100644 examples/01_extending_airavata_agent/Makefile
delete mode 100644 examples/01_extending_airavata_agent/README.md
delete mode 100644 examples/02_using_python_sdk/.gitignore
delete mode 100644
examples/02_using_python_sdk/data/alphafold2/Abeta42_Dimer.fasta
delete mode 100644 examples/02_using_python_sdk/data/amber/RAMP1.prmtop
delete mode 100644 examples/02_using_python_sdk/data/amber/RAMP1_equil.rst7
delete mode 100644 examples/02_using_python_sdk/data/amber/md.in
delete mode 100644
examples/02_using_python_sdk/data/gaussian/NOR0N-RAD21-freq.gjf
delete mode 100644 examples/02_using_python_sdk/data/gromacs/md.mdp
delete mode 100644 examples/02_using_python_sdk/data/gromacs/npt.gro
delete mode 100644 examples/02_using_python_sdk/data/gromacs/npt.tpr
delete mode 100644 examples/02_using_python_sdk/data/namd/b4pull.pdb
delete mode 100644 examples/02_using_python_sdk/data/namd/b4pull.restart.coor
delete mode 100644 examples/02_using_python_sdk/data/namd/b4pull.restart.vel
delete mode 100644 examples/02_using_python_sdk/data/namd/b4pull.restart.xsc
delete mode 100644 examples/02_using_python_sdk/data/namd/par_all36_water.prm
delete mode 100644 examples/02_using_python_sdk/data/namd/par_all36m_prot.prm
delete mode 100644 examples/02_using_python_sdk/data/namd/pull_cpu.conf
delete mode 100644 examples/02_using_python_sdk/data/namd/pull_gpu.conf
delete mode 100644 examples/02_using_python_sdk/data/namd/structure.pdb
delete mode 100644 examples/02_using_python_sdk/data/namd/structure.psf
delete mode 100644 examples/02_using_python_sdk/data/sample.txt
delete mode 100644 examples/02_using_python_sdk/experiment_sdk.ipynb
delete mode 100644 examples/02_using_python_sdk/molecular_dynamics.ipynb
delete mode 100644 examples/02_using_python_sdk/namd_workshop_cpu.ipynb
delete mode 100644 examples/02_using_python_sdk/namd_workshop_gpu.ipynb
delete mode 100644 examples/02_using_python_sdk/settings.ini
create mode 100644 examples/projects_using_airavata.md
create mode 100644 examples/python_sdk_experiment_tracking.md
create mode 100644 examples/python_sdk_jupyter_notebooks.md
