This is an automated email from the ASF dual-hosted git repository.
yasith pushed a change to branch cybershuttle-dev
in repository https://gitbox.apache.org/repos/asf/airavata.git
discard d83cfb4e23 gather all dependency versions to /pom.xml. fix bugs.
discard dbe10b3f9c update airavata distribution module to match deployment
structure
discard 9eabe24a3d fix deprecations, cleanup code. add placeholders for job
monitor email/pw in airavata-server.properties
discard 27cf8c0309 fix issues with helix participant and job engine starter
discard 4c2c874b55 get hibernate orm to validate against test db. manually
specify catalog for conflicting entities.
discard 582e78a996 migrate openjpa to hibernate, update pool and dbcp deps to
pool2 and dbcp2.
discard a22e55cd31 parametrize pom versions. add maven-enforcer rule for
dependency convergence and fix version issues.
discard f7ce266948 regenerated thrift stubs with version 0.21.0 and fix issues
discard b6363142d2 bump JDK to v17. create devcontainer setup. bump rabbitmq
and proto versions. consolidate maven-compiler plugin versions. migrate openjpa
to 4.0.1. update javax to jakarta. regenerate certs. fix bugs.
add 2eb180795d included missing license headers
add 0b5cf3a523 research framework formatting and included missing license
headers
add 2eb089f5a2 Merge pull request #500 from apache/cybershuttle-staging
new 0aabc561f8 bump JDK to v17. create devcontainer setup. bump rabbitmq
and proto versions. consolidate maven-compiler plugin versions. migrate openjpa
to 4.0.1. update javax to jakarta. regenerate certs. fix bugs.
new 6849228a90 regenerated thrift stubs with version 0.21.0 and fix issues
new 1fe9785eba parametrize pom versions. add maven-enforcer rule for
dependency convergence and fix version issues.
new 0845d49707 migrate openjpa to hibernate, update pool and dbcp deps to
pool2 and dbcp2.
new c22eed23fe get hibernate orm to validate against test db. manually
specify catalog for conflicting entities.
new 4adcfa0320 fix issues with helix participant and job engine starter
new d5f575c940 fix deprecations, cleanup code. add placeholders for job
monitor email/pw in airavata-server.properties
new d567d3ea27 update airavata distribution module to match deployment
structure
new 89de03740e gather all dependency versions to /pom.xml. fix bugs.
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Summary of changes:
modules/agent-framework/agent-service/pom.xml | 19 +++++
.../service/AgentServiceApplication.java | 18 +++++
.../agent/connection/service/UserContext.java | 18 +++++
.../service/config/AuthzTokenFilter.java | 18 +++++
.../service/config/ClusterApplicationConfig.java | 18 +++++
.../service/controllers/AgentController.java | 18 +++++
.../service/controllers/ExperimentController.java | 18 +++++
.../service/controllers/PlanController.java | 18 +++++
.../service/db/entity/AgentDeploymentInfo.java | 18 +++++
.../service/db/entity/AgentExecution.java | 18 +++++
.../service/db/entity/AgentExecutionStatus.java | 18 +++++
.../agent/connection/service/db/entity/Plan.java | 18 +++++
.../service/db/repo/AgentDeploymentInfoRepo.java | 18 +++++
.../service/db/repo/AgentExecutionRepo.java | 18 +++++
.../service/db/repo/AgentExecutionStatusRepo.java | 18 +++++
.../agent/connection/service/db/repo/PlanRepo.java | 18 +++++
.../service/handlers/AgentConnectionHandler.java | 18 +++++
.../service/handlers/AgentManagementHandler.java | 18 +++++
.../connection/service/handlers/FuseFSHandler.java | 18 +++++
.../connection/service/handlers/PlanHandler.java | 18 +++++
.../models/AgentAsyncCommandExecutionRequest.java | 18 +++++
.../models/AgentAsyncCommandExecutionResponse.java | 18 +++++
.../models/AgentAsyncCommandListRequest.java | 18 +++++
.../models/AgentAsyncCommandListResponse.java | 18 +++++
.../models/AgentAsyncCommandTerminateRequest.java | 18 +++++
.../models/AgentAsyncCommandTerminateResponse.java | 18 +++++
.../service/models/AgentCommandExecutionAck.java | 18 +++++
.../models/AgentCommandExecutionRequest.java | 18 +++++
.../models/AgentCommandExecutionResponse.java | 18 +++++
.../service/models/AgentEnvSetupAck.java | 18 +++++
.../service/models/AgentEnvSetupRequest.java | 18 +++++
.../service/models/AgentEnvSetupResponse.java | 18 +++++
.../service/models/AgentInfoResponse.java | 18 +++++
.../service/models/AgentJupyterExecutionAck.java | 18 +++++
.../models/AgentJupyterExecutionRequest.java | 18 +++++
.../models/AgentJupyterExecutionResponse.java | 18 +++++
.../service/models/AgentKernelRestartAck.java | 18 +++++
.../service/models/AgentKernelRestartRequest.java | 18 +++++
.../service/models/AgentKernelRestartResponse.java | 18 +++++
.../service/models/AgentLaunchRequest.java | 18 +++++
.../service/models/AgentLaunchResponse.java | 18 +++++
.../service/models/AgentPythonExecutionAck.java | 18 +++++
.../models/AgentPythonExecutionRequest.java | 18 +++++
.../models/AgentPythonExecutionResponse.java | 18 +++++
.../service/models/AgentTerminateResponse.java | 18 +++++
.../connection/service/models/AgentTunnelAck.java | 18 +++++
.../service/models/AgentTunnelCreateRequest.java | 18 +++++
.../service/models/AgentTunnelCreateResponse.java | 18 +++++
.../models/AgentTunnelTerminateRequest.java | 18 +++++
.../models/AgentTunnelTerminateResponse.java | 18 +++++
.../connection/service/models/AsyncCommand.java | 18 +++++
.../connection/service/models/DirectoryInfo.java | 18 +++++
.../service/models/ExperimentStorageResponse.java | 18 +++++
.../agent/connection/service/models/FileInfo.java | 18 +++++
.../service/services/AiravataFileService.java | 18 +++++
.../service/services/AiravataService.java | 18 +++++
.../src/main/resources/application.yml | 16 +++++
modules/agent-framework/airavata-agent/Dockerfile | 19 +++++
modules/agent-framework/airavata-agent/Makefile | 17 +++++
modules/agent-framework/airavata-agent/README.md | 19 +++++
modules/agent-framework/airavata-agent/agent.go | 17 +++++
modules/agent-framework/airavata-agent/agent.sh | 17 +++++
modules/agent-framework/airavata-agent/kernel.py | 16 +++++
.../agent-framework/airavata-agent/pkg/jupyter.go | 17 +++++
.../agent-framework/airavata-agent/pkg/python.go | 17 +++++
.../agent-framework/airavata-agent/pkg/shell.go | 17 +++++
.../agent-framework/airavata-agent/pkg/tunnel.go | 17 +++++
.../agent-framework/airavata-agent/pkg/types.go | 17 +++++
.../protos/agent-communication.pb.go | 17 +++++
.../protos/agent-communication_grpc.pb.go | 17 +++++
modules/agent-framework/airavata-fuse/Makefile | 17 +++++
modules/agent-framework/airavata-fuse/README.md | 19 +++++
modules/agent-framework/pom.xml | 19 +++++
.../proto/agent-communication.proto | 20 ++++++
.../src/main/resources/conf/application.yml | 16 +++++
.../src/main/resources/conf/application.yml | 16 +++++
.../airavata/file/server/model/AiravataFile.java | 18 +++++
modules/research-framework/pom.xml | 18 +++++
.../research-framework/research-service/README.md | 19 +++++
.../research-framework/research-service/pom.xml | 18 +++++
.../airavata/research/service/AiravataService.java | 18 ++---
.../service/ResearchServiceApplication.java | 18 ++---
.../research/service/config/AuthzTokenFilter.java | 18 ++---
.../service/config/DevDataInitializer.java | 83 +++++++++++-----------
.../research/service/config/OpenApiConfig.java | 21 +++++-
.../research/service/config/WebMvcConfig.java | 7 +-
.../controller/GlobalExceptionController.java | 18 ++---
.../service/controller/ProjectController.java | 18 +++++
.../service/controller/ResearchHubController.java | 18 ++---
.../service/controller/ResourceController.java | 67 ++++++++---------
.../service/controller/SessionController.java | 33 +++++++--
.../research/service/dto/CreateProjectRequest.java | 29 ++++++--
.../service/dto/CreateResourceRequest.java | 21 +++++-
.../service/dto/ModifyResourceRequest.java | 21 +++++-
.../research/service/dto/RedirectResponse.java | 18 +++++
.../research/service/dto/ResourceResponse.java | 19 +++++
.../research/service/enums/PrivacyEnum.java | 18 +++++
.../research/service/enums/ResourceTypeEnum.java | 20 ++++++
.../research/service/enums/SessionStatusEnum.java | 20 ++++++
.../research/service/enums/StatusEnum.java | 18 +++++
.../research/service/exception/ErrorResponse.java | 19 +++++
.../service/exception/GlobalExceptionHandler.java | 18 +++++
.../research/service/handlers/ProjectHandler.java | 20 +++---
.../service/handlers/ResearchHubHandler.java | 18 ++---
.../research/service/handlers/ResourceHandler.java | 18 ++---
.../research/service/handlers/SessionHandler.java | 18 ++---
.../research/service/model/UserContext.java | 18 ++---
.../service/model/entity/DatasetResource.java | 18 ++---
.../service/model/entity/ModelResource.java | 18 ++---
.../service/model/entity/NotebookResource.java | 18 ++---
.../research/service/model/entity/Project.java | 18 ++---
.../service/model/entity/RepositoryResource.java | 18 ++---
.../research/service/model/entity/Resource.java | 18 ++---
.../research/service/model/entity/Session.java | 18 ++---
.../research/service/model/entity/Tag.java | 18 ++---
.../service/model/repo/ProjectRepository.java | 18 ++---
.../service/model/repo/ResourceRepository.java | 18 ++---
.../service/model/repo/SessionRepository.java | 18 ++---
.../research/service/model/repo/TagRepository.java | 18 ++---
.../src/main/proto/research-service.proto | 20 ++++++
.../src/main/resources/application.yml | 16 +++++
sandbox/simstream/README.md | 19 +++++
sandbox/simstream/example/README.md | 19 +++++
.../simstream/example/logfile_checker/README.md | 19 +++++
.../example/logfile_checker/remote_log.slurm | 17 +++++
sandbox/simstream/example/mem_streamer/README.md | 19 +++++
sandbox/simstream/example/openmm_example/README.md | 19 +++++
127 files changed, 2136 insertions(+), 289 deletions(-)
