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yasith pushed a change to branch styles-and-rules
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discard 5b2e37f7fa use palantir java format. remove more dead code
discard 2b2e2e388f remove non-source java files
discard 8b784c213f add header-setting rule
add d2242cace2 Add correct build status tag
add 890bf46eb3 Update maven-build.yml
add e5002a6e4a Leave a comment to warn that it is not secure (#243)
add 0f3339acba remove AWSCLIV2.pkg and lp.pdf from project root.
add ae848779c9 Remove Static Thrift Stubs and Set Up Auto Generation at
Build TIme (#513)
add dc38e27292 Bump requests from 2.31.0 to 2.32.4 in /dev-tools/ansible
(#514)
add 9d66d544d7 add header-setting rule. use palantir java format. remove
non-code java files.
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Summary of changes:
.github/workflows/maven-build.yml | 27 +-
.gitignore | 5 +
AWSCLIV2.pkg | Bin 14479360 -> 0 bytes
README.md | 4 +-
.../airavata-api-client}/pom.xml | 12 +-
.../airavata/api/client/AiravataClientFactory.java | 0
airavata-api/airavata-api-server/pom.xml | 6 -
airavata-api/airavata-api-stubs/pom.xml | 88 -
.../java/org/apache/airavata/api/Airavata.java | 310935 ------------------
.../apache/airavata/api/airavata_apiConstants.java | 45 -
airavata-api/airavata-base-api/pom.xml | 27 -
.../java/org/apache/airavata/base/api/BaseAPI.java | 923 -
.../java-client-samples/pom.xml | 4 +-
airavata-api/airavata-data-models/pom.xml | 48 +-
.../airavata-data-models/src/main/java/.gitkeep | 0
.../org/apache/airavata/model/ComponentState.java | 76 -
.../org/apache/airavata/model/ComponentStatus.java | 623 -
.../java/org/apache/airavata/model/EdgeModel.java | 726 -
.../java/org/apache/airavata/model/NodeModel.java | 938 -
.../java/org/apache/airavata/model/PortModel.java | 832 -
.../org/apache/airavata/model/WorkflowModel.java | 1349 -
.../org/apache/airavata/model/WorkflowState.java | 76 -
.../org/apache/airavata/model/WorkflowStatus.java | 620 -
.../accountprovisioning/SSHAccountProvisioner.java | 740 -
.../SSHAccountProvisionerConfigParam.java | 720 -
.../SSHAccountProvisionerConfigParamType.java | 61 -
.../ApplicationDeploymentDescription.java | 2422 -
.../appdeployment/ApplicationModule.java | 731 -
.../appcatalog/appdeployment/CommandObject.java | 511 -
.../appcatalog/appdeployment/SetEnvPaths.java | 615 -
.../ApplicationInterfaceDescription.java | 1303 -
.../appcatalog/computeresource/BatchQueue.java | 1602 -
.../computeresource/CloudJobSubmission.java | 933 -
.../ComputeResourceDescription.java | 2511 -
.../model/appcatalog/computeresource/DMType.java | 61 -
.../appcatalog/computeresource/FileSystems.java | 86 -
.../computeresource/GlobusJobSubmission.java | 672 -
.../computeresource/JobManagerCommand.java | 110 -
.../computeresource/JobSubmissionInterface.java | 617 -
.../computeresource/JobSubmissionProtocol.java | 89 -
.../computeresource/LOCALSubmission.java | 627 -
.../appcatalog/computeresource/MonitorMode.java | 84 -
.../appcatalog/computeresource/ProviderName.java | 68 -
.../computeresource/ResourceJobManager.java | 1095 -
.../computeresource/ResourceJobManagerType.java | 98 -
.../computeresource/SSHJobSubmission.java | 1122 -
.../computeresource/UnicoreJobSubmission.java | 621 -
.../appcatalog/gatewaygroups/GatewayGroups.java | 699 -
.../gatewayprofile/ComputeResourcePreference.java | 2182 -
.../gatewayprofile/GatewayResourceProfile.java | 1057 -
.../gatewayprofile/StoragePreference.java | 718 -
.../BatchQueueResourcePolicy.java | 1012 -
.../ComputeResourcePolicy.java | 764 -
.../ComputeResourceReservation.java | 839 -
.../GroupAccountSSHProvisionerConfig.java | 711 -
.../GroupComputeResourcePreference.java | 2114 -
.../groupresourceprofile/GroupResourceProfile.java | 1420 -
.../airavata/model/appcatalog/parser/IOType.java | 61 -
.../airavata/model/appcatalog/parser/Parser.java | 1213 -
.../model/appcatalog/parser/ParserConnector.java | 855 -
.../appcatalog/parser/ParserConnectorInput.java | 809 -
.../model/appcatalog/parser/ParserInput.java | 807 -
.../model/appcatalog/parser/ParserOutput.java | 807 -
.../model/appcatalog/parser/ParsingTemplate.java | 910 -
.../appcatalog/parser/ParsingTemplateInput.java | 809 -
.../StorageResourceDescription.java | 1086 -
.../UserComputeResourcePreference.java | 1474 -
.../userresourceprofile/UserResourceProfile.java | 1161 -
.../userresourceprofile/UserStoragePreference.java | 718 -
.../airavata/model/application/io/DataType.java | 80 -
.../model/application/io/InputDataObjectType.java | 1774 -
.../model/application/io/OutputDataObjectType.java | 1576 -
.../apache/airavata/model/commons/ErrorModel.java | 973 -
.../airavata/model/commons/ValidationResults.java | 547 -
.../airavata/model/commons/ValidatorResult.java | 508 -
.../model/commons/airavata_commonsConstants.java | 31 -
.../credential/store/CertificateCredential.java | 1130 -
.../model/credential/store/CommunityUser.java | 598 -
.../model/credential/store/CredentialSummary.java | 1041 -
.../model/credential/store/PasswordCredential.java | 1017 -
.../model/credential/store/SSHCredential.java | 1133 -
.../model/credential/store/SummaryType.java | 68 -
.../store/credential_store_modelsConstants.java | 31 -
.../airavata/model/data/movement/DMType.java | 61 -
.../model/data/movement/DataMovementInterface.java | 923 -
.../model/data/movement/DataMovementProtocol.java | 86 -
.../model/data/movement/GridFTPDataMovement.java | 672 -
.../model/data/movement/LOCALDataMovement.java | 408 -
.../model/data/movement/SCPDataMovement.java | 735 -
.../model/data/movement/SecurityProtocol.java | 87 -
.../model/data/movement/UnicoreDataMovement.java | 619 -
.../model/data/replica/DataProductModel.java | 1665 -
.../model/data/replica/DataProductType.java | 61 -
.../data/replica/DataReplicaLocationModel.java | 1622 -
.../data/replica/ReplicaLocationCategory.java | 67 -
.../model/data/replica/ReplicaPersistentType.java | 61 -
.../apache/airavata/model/dbevent/CrudType.java | 67 -
.../airavata/model/dbevent/DBEventMessage.java | 612 -
.../model/dbevent/DBEventMessageContext.java | 366 -
.../airavata/model/dbevent/DBEventPublisher.java | 401 -
.../model/dbevent/DBEventPublisherContext.java | 634 -
.../airavata/model/dbevent/DBEventSubscriber.java | 396 -
.../apache/airavata/model/dbevent/DBEventType.java | 61 -
.../apache/airavata/model/dbevent/EntityType.java | 79 -
.../model/error/AiravataClientException.java | 533 -
.../airavata/model/error/AiravataErrorType.java | 98 -
.../model/error/AiravataSystemException.java | 528 -
.../model/error/AuthenticationException.java | 401 -
.../model/error/AuthorizationException.java | 401 -
.../model/error/DuplicateEntryException.java | 403 -
.../model/error/ExperimentNotFoundException.java | 403 -
.../model/error/InvalidRequestException.java | 402 -
.../model/error/LaunchValidationException.java | 511 -
.../model/error/ProjectNotFoundException.java | 401 -
.../airavata/model/error/TimedOutException.java | 293 -
.../airavata/model/error/ValidationResults.java | 547 -
.../airavata/model/error/ValidatorResult.java | 501 -
.../airavata/model/experiment/ExperimentModel.java | 2746 -
.../model/experiment/ExperimentSearchFields.java | 82 -
.../model/experiment/ExperimentStatistics.java | 1822 -
.../model/experiment/ExperimentSummaryModel.java | 1428 -
.../airavata/model/experiment/ExperimentType.java | 61 -
.../model/experiment/ProjectSearchFields.java | 61 -
.../experiment/UserConfigurationDataModel.java | 1590 -
.../apache/airavata/model/group/GroupModel.java | 1039 -
.../model/group/ResourcePermissionType.java | 67 -
.../apache/airavata/model/group/ResourceType.java | 76 -
.../org/apache/airavata/model/job/JobModel.java | 1594 -
.../event/ExperimentIntermediateOutputsEvent.java | 648 -
.../event/ExperimentStatusChangeEvent.java | 610 -
.../messaging/event/ExperimentSubmitEvent.java | 497 -
.../model/messaging/event/JobIdentifier.java | 800 -
.../messaging/event/JobStatusChangeEvent.java | 514 -
.../event/JobStatusChangeRequestEvent.java | 514 -
.../airavata/model/messaging/event/Message.java | 849 -
.../model/messaging/event/MessageLevel.java | 67 -
.../model/messaging/event/MessageType.java | 85 -
.../model/messaging/event/ProcessIdentifier.java | 598 -
.../messaging/event/ProcessStatusChangeEvent.java | 514 -
.../event/ProcessStatusChangeRequestEvent.java | 514 -
.../model/messaging/event/ProcessSubmitEvent.java | 699 -
.../messaging/event/ProcessTerminateEvent.java | 598 -
.../model/messaging/event/TaskIdentifier.java | 699 -
.../messaging/event/TaskOutputChangeEvent.java | 557 -
.../messaging/event/TaskStatusChangeEvent.java | 514 -
.../event/TaskStatusChangeRequestEvent.java | 514 -
.../parallelism/ApplicationParallelismType.java | 89 -
.../airavata/model/process/ProcessModel.java | 3408 -
.../airavata/model/process/ProcessWorkflow.java | 709 -
.../ComputationalResourceSchedulingModel.java | 1633 -
.../apache/airavata/model/security/AuthzToken.java | 558 -
.../airavata/model/status/ExperimentState.java | 82 -
.../airavata/model/status/ExperimentStatus.java | 739 -
.../org/apache/airavata/model/status/JobState.java | 82 -
.../apache/airavata/model/status/JobStatus.java | 726 -
.../apache/airavata/model/status/ProcessState.java | 106 -
.../airavata/model/status/ProcessStatus.java | 832 -
.../airavata/model/status/QueueStatusModel.java | 869 -
.../apache/airavata/model/status/TaskState.java | 70 -
.../apache/airavata/model/status/TaskStatus.java | 726 -
.../apache/airavata/model/task/DataStageType.java | 71 -
.../airavata/model/task/DataStagingTaskModel.java | 1142 -
.../model/task/EnvironmentSetupTaskModel.java | 513 -
.../model/task/JobSubmissionTaskModel.java | 627 -
.../airavata/model/task/MonitorTaskModel.java | 408 -
.../org/apache/airavata/model/task/TaskModel.java | 1712 -
.../org/apache/airavata/model/task/TaskTypes.java | 77 -
.../org/apache/airavata/model/tenant/Tenant.java | 1569 -
.../model/tenant/TenantApprovalStatus.java | 79 -
.../apache/airavata/model/tenant/TenantConfig.java | 718 -
.../airavata/model/tenant/TenantPreferences.java | 612 -
.../airavata/model/user/CustomDashboard.java | 2952 -
.../airavata/model/user/NSFDemographics.java | 1127 -
.../org/apache/airavata/model/user/Status.java | 97 -
.../apache/airavata/model/user/USCitizenship.java | 68 -
.../apache/airavata/model/user/UserProfile.java | 3263 -
.../org/apache/airavata/model/user/disability.java | 67 -
.../org/apache/airavata/model/user/ethnicity.java | 66 -
.../java/org/apache/airavata/model/user/race.java | 85 -
.../model/user/user_profile_modelConstants.java | 31 -
.../airavata/model/workflow/AiravataWorkflow.java | 1615 -
.../airavata/model/workflow/ApplicationState.java | 82 -
.../airavata/model/workflow/ApplicationStatus.java | 726 -
.../airavata/model/workflow/ComponentType.java | 61 -
.../apache/airavata/model/workflow/DataBlock.java | 824 -
.../airavata/model/workflow/HandlerState.java | 82 -
.../airavata/model/workflow/HandlerStatus.java | 726 -
.../airavata/model/workflow/HandlerType.java | 61 -
.../model/workflow/WorkflowApplication.java | 1738 -
.../model/workflow/WorkflowConnection.java | 1344 -
.../airavata/model/workflow/WorkflowHandler.java | 1357 -
.../airavata/model/workflow/WorkflowState.java | 91 -
.../airavata/model/workflow/WorkflowStatus.java | 726 -
.../apache/airavata/model/workspace/Gateway.java | 2417 -
.../model/workspace/GatewayApprovalStatus.java | 79 -
.../workspace/GatewayUsageReportingCommand.java | 598 -
.../org/apache/airavata/model/workspace/Group.java | 506 -
.../airavata/model/workspace/Notification.java | 1124 -
.../model/workspace/NotificationPriority.java | 64 -
.../apache/airavata/model/workspace/Project.java | 1226 -
.../org/apache/airavata/model/workspace/User.java | 928 -
.../airavata/model/util/ComputeResourceUtil.java | 82 -
airavata-api/pom.xml | 3 +-
.../profile-service-commons/pom.xml | 2 -
.../profile-service/profile-service-stubs/pom.xml | 55 +-
.../groupmanager/cpi/GroupManagerService.java | 17596 -
.../exception/GroupManagerServiceException.java | 398 -
.../cpi/group_manager_cpiConstants.java | 33 -
.../iam/admin/services/cpi/IamAdminServices.java | 20186 --
.../cpi/exception/IamAdminServicesException.java | 398 -
.../cpi/iam_admin_services_cpiConstants.java | 33 -
.../profile/tenant/cpi/TenantProfileService.java | 9089 -
.../exception/TenantProfileServiceException.java | 398 -
.../tenant/cpi/profile_tenant_cpiConstants.java | 33 -
.../profile/user/cpi/UserProfileService.java | 9449 -
.../cpi/exception/UserProfileServiceException.java | 398 -
.../user/cpi/profile_user_cpiConstants.java | 33 -
airavata-services/services-security/pom.xml | 5 -
dev-tools/ansible/requirements.txt | 2 +-
modules/agent-framework/agent-service/pom.xml | 5 +-
modules/airavata-helix/agent-api/pom.xml | 14 -
modules/airavata-helix/helix-spectator/pom.xml | 15 -
modules/airavata-helix/task-api/pom.xml | 13 -
modules/airavata-helix/task-core/pom.xml | 14 -
modules/airavata-helix/workflow-impl/pom.xml | 16 -
.../metadata-analyzer/pom.xml | 5 -
.../metascheduler-core/pom.xml | 6 -
.../process-scheduler/pom.xml | 10 -
modules/commons/pom.xml | 5 -
.../computer-resource-monitoring-service/pom.xml | 6 -
.../credential-store-stubs/pom.xml | 47 +-
.../store/cpi/CredentialStoreService.java | 15116 -
.../store/cpi/credential_store_cpiConstants.java | 31 -
.../store/exception/CredentialStoreException.java | 398 -
.../src/main/assembly/controller-bin-assembly.xml | 2 +-
.../main/assembly/email-monitor-bin-assembly.xml | 2 +-
.../src/main/assembly/parser-wm-bin-assembly.xml | 2 +-
.../src/main/assembly/participant-bin-assembly.xml | 2 +-
.../src/main/assembly/post-wm-bin-assembly.xml | 2 +-
.../src/main/assembly/pre-wm-bin-assembly.xml | 2 +-
.../assembly/realtime-monitor-bin-assembly.xml | 2 +-
modules/file-server/pom.xml | 1 +
.../app/tests/selenium/pom.xml | 2 -
modules/orchestrator/orchestrator-client/pom.xml | 54 +-
.../orchestrator/cpi/OrchestratorService.java | 5575 -
.../cpi/orchestrator_cpiConstants.java | 31 -
modules/orchestrator/orchestrator-service/pom.xml | 6 -
.../registry-server/registry-api-stubs/pom.xml | 55 +-
.../airavata/registry/api/RegistryService.java | 240778 --------------
.../api/exception/RegistryServiceException.java | 398 -
.../registry/api/registry_apiConstants.java | 31 -
.../research-framework/research-service/pom.xml | 5 +-
modules/server/pom.xml | 2 -
.../sharing-registry/sharing-data-migrator/pom.xml | 2 -
.../sharing-registry-server/pom.xml | 6 -
.../sharing-registry-stubs/pom.xml | 52 +-
.../airavata/sharing/registry/models/Domain.java | 941 -
.../registry/models/DuplicateEntryException.java | 405 -
.../airavata/sharing/registry/models/Entity.java | 1691 -
.../sharing/registry/models/EntitySearchField.java | 97 -
.../sharing/registry/models/EntityType.java | 936 -
.../sharing/registry/models/GroupAdmin.java | 617 -
.../sharing/registry/models/GroupCardinality.java | 66 -
.../sharing/registry/models/GroupChildType.java | 65 -
.../sharing/registry/models/GroupMembership.java | 946 -
.../sharing/registry/models/GroupType.java | 65 -
.../sharing/registry/models/PermissionType.java | 936 -
.../sharing/registry/models/SearchCondition.java | 82 -
.../sharing/registry/models/SearchCriteria.java | 656 -
.../airavata/sharing/registry/models/Sharing.java | 1160 -
.../registry/models/SharingRegistryException.java | 402 -
.../sharing/registry/models/SharingType.java | 68 -
.../airavata/sharing/registry/models/User.java | 1274 -
.../sharing/registry/models/UserGroup.java | 1455 -
.../registry/models/sharing_modelsConstants.java | 31 -
.../service/cpi/SharingRegistryService.java | 69356 ----
.../registry/service/cpi/sharing_cpiConstants.java | 31 -
.../sharing-registry/thrift_models/thrift-gen.sh | 43 -
pom.xml | 13 +-
.../airavata-apis/airavata_api.thrift | 44 +-
.../airavata-apis/airavata_errors.thrift | 1 -
.../airavata-apis/messaging_events.thrift | 5 +-
.../airavata-apis/workflow_api.thrift | 21 +-
.../component-cpis/generate-cpi-stubs.sh | 234 -
.../account_provisioning_model.thrift | 0
.../data-models/airavata_data_models.thrift | 46 -
.../app-catalog-models/app_catalog_models.thrift | 23 -
.../application_deployment_model.thrift | 2 +-
.../application_interface_model.thrift | 3 +-
.../application_io_models.thrift | 2 -
.../compute_resource_model.thrift | 4 +-
.../credential_store_models.thrift | 0
.../data_movement_models.thrift | 2 +-
.../experiment_catalog_models.thrift | 23 -
.../experiment_model.thrift | 6 +-
.../gateway_groups_model.thrift | 0
.../gateway_resource_profile_model.thrift | 1 -
.../group_manager_model.thrift | 1 -
.../group_resource_profile_model.thrift | 2 +-
.../job_model.thrift | 0
.../parallelism_model.thrift | 0
.../{app-catalog-models => }/parser_model.thrift | 0
.../process_model.thrift | 6 +-
.../replica_catalog_models.thrift | 0
.../resource_catalog_models.thrift | 25 -
.../scheduling_model.thrift | 0
.../{sharing-models => }/sharing_models.thrift | 0
.../status_models.thrift | 0
.../storage_resource_model.thrift | 2 +-
.../task_model.thrift | 10 +-
.../tenant_profile_model.thrift | 2 -
.../user_tenant_group_models.thrift | 24 -
.../user_profile_model.thrift | 2 +-
.../user_resource_profile_model.thrift | 4 -
.../workflow_data_model.thrift | 5 +-
.../{workflow-models => }/workflow_model.thrift | 4 +-
.../workspace_model.thrift | 2 +-
.../generate-thrift-stubs.sh | 99 +-
.../credential-store-cpi.thrift | 2 +-
.../credential_store_errors.thrift | 0
.../service-cpis/generate-service-cpi-stubs.sh | 206 -
.../orchestrator-cpi.thrift | 2 +-
.../service-cpis/profile-service-cpi.thrift | 11 +-
.../group-manager/group-manager-cpi.thrift | 4 +-
.../iam-admin-services-cpi.thrift | 8 +-
.../profile-service/profile-service-cpi.thrift | 36 -
.../profile-tenant/profile-tenant-cpi.thrift | 4 +-
.../profile-user/profile-user-cpi.thrift | 4 +-
.../registry-api.thrift | 44 +-
.../registry_api_errors.thrift | 0
.../sharing_cpi.thrift | 2 +-
.../user-profile-cpi.thrift | 2 +-
.../user_profile_cpi_errors.thrift | 0
thrift-interface-descriptions/stubs_java.thrift | 54 +
thrift-interface-descriptions/stubs_php.thrift | 61 +
tools/load-client/pom.xml | 7 +-
.../airavata/tools/load/SecurityManager.java | 1 +
337 files changed, 593 insertions(+), 848048 deletions(-)
delete mode 100644 AWSCLIV2.pkg
copy {airavata-services/profile-service/profile-service-stubs =>
airavata-api/airavata-api-client}/pom.xml (89%)
rename airavata-api/{airavata-api-stubs =>
airavata-api-client}/src/main/java/org/apache/airavata/api/client/AiravataClientFactory.java
(100%)
delete mode 100644 airavata-api/airavata-api-stubs/pom.xml
delete mode 100644
airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
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airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/airavata_apiConstants.java
delete mode 100644 airavata-api/airavata-base-api/pom.xml
delete mode 100644
airavata-api/airavata-base-api/src/main/java/org/apache/airavata/base/api/BaseAPI.java
rename lp.pdf => airavata-api/airavata-data-models/src/main/java/.gitkeep
(100%)
delete mode 100644
airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/ComponentState.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/ComponentStatus.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/EdgeModel.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/NodeModel.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/PortModel.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/WorkflowModel.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/WorkflowState.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/WorkflowStatus.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/accountprovisioning/SSHAccountProvisioner.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/accountprovisioning/SSHAccountProvisionerConfigParam.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/accountprovisioning/SSHAccountProvisionerConfigParamType.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/appdeployment/ApplicationDeploymentDescription.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/appdeployment/ApplicationModule.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/appdeployment/CommandObject.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/appdeployment/SetEnvPaths.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/appinterface/ApplicationInterfaceDescription.java
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airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/BatchQueue.java
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thrift-interface-descriptions/component-cpis/generate-cpi-stubs.sh
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airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Thrift/StringFunc/TStringFunc.php
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thrift-interface-descriptions/service-cpis/profile-service/profile-service-cpi.thrift
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service-cpis}/registry_api_errors.thrift (100%)
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service-cpis}/sharing_cpi.thrift (99%)
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