This is an automated email from the ASF dual-hosted git repository.
lahirujayathilake pushed a change to branch main
in repository https://gitbox.apache.org/repos/asf/airavata-portals.git
omit 0d901c3a4 upgrade the dependency requirements
omit 103f83235 Add MCP Client Chatbot Directory (#19)
omit 70930b096 Merge pull request #18 from
apache/dependabot/npm_and_yarn/airavata-django-portal/django_airavata/apps/workspace/django-airavata-workspace-plugin-api/pbkdf2-3.1.3
omit 8b441cf8c Bump pbkdf2
omit 5cebbdeb7 Merge pull request #16 from
apache/dependabot/npm_and_yarn/airavata-django-portal/django_airavata/apps/dataparsers/pbkdf2-3.1.3
omit 3979b8897 Merge pull request #17 from
apache/dependabot/npm_and_yarn/airavata-django-portal/django_airavata/apps/workspace/pbkdf2-3.1.3
omit 788a6e41d fix login flow in php gateway for php 8.1 and laravel 8
omit 69f248289 Bump pbkdf2 in
/airavata-django-portal/django_airavata/apps/workspace
omit ebe42927a Bump pbkdf2 in
/airavata-django-portal/django_airavata/apps/dataparsers
omit c7fd60e14 update pga portal to running state
omit c44a313c2 Merge pull request #14 from
apache/dependabot/npm_and_yarn/airavata-custos-portal/pbkdf2-3.1.3
omit c1cb0afd0 Bump pbkdf2 from 3.1.1 to 3.1.3 in /airavata-custos-portal
omit a264dd7b6 Merge pull request #13 from
apache/dependabot/npm_and_yarn/airavata-django-portal/django_airavata/apps/admin/pbkdf2-3.1.3
omit 077464857 Bump pbkdf2 in
/airavata-django-portal/django_airavata/apps/admin
omit e37eac1b8 Merge pull request #12 from
apache/dependabot/npm_and_yarn/airavata-mft-portal/airavata_mft/static/common/pbkdf2-3.1.3
omit 79adefe94 Bump pbkdf2 in
/airavata-mft-portal/airavata_mft/static/common
omit 8f76ca595 Merge pull request #11 from
apache/dependabot/npm_and_yarn/airavata-local-agent/cross-spawn-7.0.6
omit e129c418f Bump cross-spawn from 7.0.3 to 7.0.6 in /airavata-local-agent
omit 2e3fd2917 Merge pull request #10 from
apache/dependabot/npm_and_yarn/airavata-local-agent/multi-eaf7dca146
omit 11ed857d4 Merge pull request #5 from
apache/dependabot/npm_and_yarn/airavata-custos-portal/elliptic-6.6.1
omit a1c279952 Merge pull request #3 from
apache/dependabot/npm_and_yarn/airavata-custos-portal/axios-0.30.0
omit 03e5840fc Bump webpack and nextron in /airavata-local-agent
omit 2e60fe1b6 Merge pull request #9 from apache/merge-portals
omit 6052f58c6 Add 'airavata-local-agent/' from commit
'e929f48fcdf318511965ca88dac3d1c311e109e8'
omit c906a8441 Merge pull request #8 from apache/merge-portals
omit d45abf852 Add 'airavata-research-portal/' from commit
'9bd34b0a1158b26e8ddabfa13474fb0c97e19cd1'
omit 79f791180 Merge pull request #6 from apache/merge-portals
omit ae06db69c Bump elliptic from 6.5.3 to 6.6.1 in /airavata-custos-portal
omit 044754dda Bump axios from 0.21.4 to 0.30.0 in /airavata-custos-portal
omit bf7c8644c Merge pull request #2 from apache/merge-portals
omit 9bd34b0a1 add resource error catching for frontend (#528)
omit 2d316351d Merge pull request #1 from apache/merge-portals
omit ae04ffaef Support liking resources (#527)
omit cb8cf86f7 move config to .env file (#526)
omit cf8971f5e remove associated projects section on resource details if no
projects (#523)
omit bb81109b7 Support resource deletion (#522)
omit fb634e842 Support better text search (#520)
omit e929f48fc Bump @babel/helpers from 7.24.5 to 7.27.4 in
/airavata-local-agent
omit 60e87c2ac Bump next from 13.5.6 to 15.2.4 in /airavata-local-agent
omit f0bf38250 Bump react-router in /modules/research-framework/portal
omit bbf080486 Bump esbuild and @chakra-ui/cli in
/modules/research-framework/portal
omit bcb049702 fix url
omit f5f9f8f1f support auto open start project modal on login
omit 2b5df43a6 Bump tar-fs and dockerode in /airavata-local-agent
omit 642314679 Bump vite from 6.2.1 to 6.2.7 in
/modules/research-framework/portal
omit 3156a6864 Update May7Workshop.tsx Events page
omit 815c7e15b May 7 workshop fixes (#502)
omit cc0dac6cd may 7 workshop agenda + resource filtering (#501)
omit dd0962d23 Delete unused SSHCredentialGenerator (#240)
omit 8fcd1baff gateway switching for local agent (#469)
omit e44de9bd0 Merge pull request #497 from ganning127/post-projects
omit 468def6cb mvp working
omit 728244d58 support for adding project datasets
omit cafb60bc2 frontend for project repo search
omit d3f364283 frontend integration for adding projects
omit 0c4e6984a ui for adding repos
omit f0d8896b6 Support session termination & deletion on jupyter
omit bb1518835 Merge pull request #489 from ganning127/agenda-change
omit d849d5a3a add chatter link
omit e8094ffbd User error handling
omit 5356d950c add events
omit ec8b12b2c ui/ux experience fixes
omit e2a47b6d8 Workshop changes
omit e0a2c286f Fix userset
omit dca907768 Merge branch 'cybershuttle-staging' of
https://github.com/apache/airavata into new-features
omit ad1fc05d9 Show project cards for repos + datasets
omit c562078b2 handle empty lists correctly in the cybershuttle.yml reader.
omit 6e806d2eb Cybershuttle.org homepage copy
omit adc91919f Condense to single resource page + allow unauthenticated
routes
omit b135bc01a Homepage + redirecting logins
omit f30561571 Support logout
omit 439ddaae5 refactoring UI and responsive changes
omit 070cf0ba0 Cybershuttle.org homepage copy
omit b612f55c5 Condense to single resource page + allow unauthenticated
routes
omit b37fcfd48 Homepage + redirecting logins
omit ffa4447e6 Support logout
omit 78a2f6e20 refactoring UI and responsive changes
omit 28dc243cd renamed the file to fix npm run build
omit 8833e2251 Authentication for Research Portal (#481)
omit 7a94c3c2a Address CORS
omit be880590d bring airavata-python-sdk updates from cybershuttle-dev
omit 985da2ed3 update the default data in DevDataInitializer and
application.yml. update package-lock.json
omit be47dfea5 Allow file tree exploring & handle rate limit error
omit 123ffc288 File tree added to ProjectDetails.tsx
omit 0401e4fd4 Backend integration with portal
omit 025eb9e8a backend integration with portal code
omit 2b762b8e2 add research portal
omit fffb71713 change gateway information
omit a5704c5e3 add asf src headers
omit c832a0c3b update readme
omit 11107da51 2.0.6
omit 3b6a8a055 2.1.0
omit 48cc04601 2.0.5
omit 7f19f9a61 2.0.4
omit 20f546ce8 added fixes
omit 8d1651ec5 change home key location
omit fc2a5f4c3 added testing versions
omit e167a8f52 added major changes
omit 4a8520d0a major ui changes and refactoring
omit 1bbf338da publishing changes
omit 586a7a13d added login code flow works now
omit 484ba4661 temp fix'
omit 40b3dd2f6 fixed for home dir
omit bba9638b3 added read and write file functions
omit 1b97b28ca added device oauth flow
omit d6f5c9f1a revert electron forge
omit aee2844ad benchmark
omit 05e5e6c12 added
omit 34d2e4fe3 redesign
omit 92103ee11 saving tabs
omit ccc4a1c50 added
omit 8fd7df651 show only cs
omit 2ff955435 fixes
omit 7d046d777 remove dialog
omit 7c6a92c47 added callbacks
omit 3cd96c476 added opening from url
omit f9142f64c added latest changes working"
omit aff68cb32 added
omit f08fda65e added port mappings & cache
omit 29b4371e0 added avaliable programs
omit 8611a832d change docker
omit dadce6866 added images
omit e1aa41824 added renaming
omit 8d4d8bd65 support for pause/unpause
omit 31613a9dd add contianerId
omit 1d045ed03 added changes to ui
omit e04aa4c10 code cleanup
omit 0e68a4586 added docker changes
omit d4842fe7d testing
omit 367341d03 added docker
omit 60f38efd3 moved list experiments to its own component
omit 019cc1c80 refactoring
omit 9bcf11e32 added latest changes
omit a5ca6c406 trying to do refresh
omit fef1ba16c fixing things
omit 25e473915 added latest changes
omit d45fa982c trying...
omit 77f6ec244 added failure handling for create experiment
omit 3e25684ed added default filtering for NAMD
omit d3484fd12 added code
omit c6a20eaa1 simple bug fixes
omit 8733aa8ca user can now save
omit ef666f4a7 added
omit ad2f9c520 vnc ref got
omit 3c204192f login bug solved
omit c1b7c48cb add page navigation warnings
omit 0ee0e045d added
omit 3f8d80eef fixes to experiment modal
omit d0fc61789 remove jn and vmd from jn and vmd exp
omit 16b4b9ddc homepage wording & user experiment acecss change
omit a92e5ad86 add user profile
omit cdeab8f88 change naming
omit c79db48f5 switch to experiment inputs and refactoring
omit a0d69ea65 added
omit 950caeb06 remove all the proxy code
omit 111124d1f output files
omit 2d8fc0936 fix bug with re-rendering and closing tabs
omit 7815bcdb4 demo changes more
omit d4c03aa1c demo changes
omit 35f63f583 working version currently
omit 21b0156ae exp details
omit ca2df7a92 fixed experiment
omit 887be2493 login
omit 63b499ff5 new user bug still exists
omit 92499fb4f more vmd
omit 13f5e76b8 added code for VMD
omit 078a127c0 code
omit 2b0420025 fixes
omit 3106c432f reset fix
omit 1bdd5ea05 added code
omit 98414912e vmd support
omit 7bc09442b working logging
omit 79a07d07f logging
omit af4c9f621 remove logs
omit 313c5e2e6 fixed multiple vmd
omit bb8c14e75 working on vnc
omit bb463286c work on the proxy
omit 2abbb1e93 queues, compute, all works now
omit 18a0bab53 refactoring code
omit 7ae020221 refactor working 1
omit 470ac9b7e packaging changes
omit cafaea861 change urls to deployed
omit 2428a952d bug fixes
omit c93d5d269 added toast
omit d1371a3da working create namd
omit c4ce2bd38 added cookie?
omit f03daf008 cleanup code
omit f374a00fa ui fixes
omit 1a030b0ba add in navbar
omit cb272f942 display you if experiment is yours
omit 8d9d1b288 update readme
omit 11cc7d0e8 make contribute on github link work
omit 870b7be30 login fixes and specific user
omit bbf34e3c8 updating naming
omit 9f646d7a5 NAMD create ui (backup)
omit 6f89a9ae2 quality of life enhancements
omit 41d5dd27d header
omit a73ff9dc1 addded header
omit ca97a6989 added support for type
omit 4c57092cd refresh token works
omit 859583e9b change to table view
omit a9951a136 working pagination
omit de1da44c3 working version for data
omit 61af835db login code
omit 433d2f657 added parsing for final URL
omit 870f062b0 trying to do cilogon
omit 789d6e100 added cilogon code
omit 1b1da6d08 login changes
omit fbfb0fddc setup for pagination
omit 95e03acb0 clean up code
omit f09721ce4 open blank jupyterlab when clicking jupyter
omit f1c88640b added redirect back for login
omit f16858a2f added support for logo
omit 765515d59 tab view works
omit 17b14935f template for pagination
omit 39161e4c1 setup list experiments
omit 494db01b6 support for publishing
omit 741aa8332 stop proxy when application quits
omit 1a0623a00 remove connection information screen
omit 4f58454e8 first working version
This update removed existing revisions from the reference, leaving the
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* -- * -- N refs/heads/main (9ad85ff31)
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No new revisions were added by this update.
Summary of changes:
airavata-custos-portal/package.json | 2 +-
airavata-custos-portal/yarn.lock | 339 +-
.../django_airavata/apps/admin/yarn.lock | 282 +-
.../django_airavata/apps/dataparsers/yarn.lock | 297 +-
.../django-airavata-workspace-plugin-api/yarn.lock | 262 +-
.../django_airavata/apps/workspace/yarn.lock | 262 +-
airavata-django-portal/requirements.txt | 44 +-
airavata-local-agent/README.md | 42 -
airavata-local-agent/electron-builder.yml | 29 -
airavata-local-agent/main/background.js | 865 -
airavata-local-agent/main/helpers/create-window.js | 100 -
airavata-local-agent/main/helpers/index.js | 22 -
airavata-local-agent/main/preload.js | 97 -
airavata-local-agent/package-lock.json | 25126 -------------------
airavata-local-agent/package.json | 52 -
.../DockerComponents/AvaliablePrograms.jsx | 90 -
.../DockerComponents/DockerContainersList.jsx | 407 -
.../DockerComponents/DockerImagesList.jsx | 87 -
.../DockerComponents/DockerInspectModal.jsx | 173 -
.../DockerComponents/Programs/JupyterProgram.jsx | 194 -
.../renderer/components/ExperimentModal.jsx | 594 -
.../renderer/components/ExperimentsList.jsx | 164 -
.../renderer/components/Footer.jsx | 93 -
.../renderer/components/HeaderBox.jsx | 124 -
.../renderer/components/JupyterLab.jsx | 175 -
.../renderer/components/LinkIconBox.jsx | 66 -
.../renderer/components/LocalFuncs.jsx | 27 -
.../renderer/components/NavBar.jsx | 49 -
.../renderer/components/NavContainer.jsx | 78 -
.../renderer/components/PanelBody.jsx | 38 -
.../renderer/components/TextWithBoldKey.jsx | 30 -
.../renderer/components/UserModal.jsx | 124 -
.../renderer/components/VNCItem.jsx | 48 -
.../renderer/components/VNCViewer.jsx | 324 -
.../renderer/components/temp/VNCTest.jsx | 37 -
airavata-local-agent/renderer/lib/Contexts.js | 110 -
airavata-local-agent/renderer/lib/constants.js | 25 -
airavata-local-agent/renderer/lib/logger.js | 70 -
airavata-local-agent/renderer/lib/utilityFuncs.js | 159 -
airavata-local-agent/renderer/next.config.js | 32 -
airavata-local-agent/renderer/pages/_app.jsx | 39 -
.../renderer/pages/create-namd-experiment.jsx | 1261 -
.../renderer/pages/docker-home.jsx | 205 -
.../renderer/pages/experiment/[experimentId].js | 72 -
airavata-local-agent/renderer/pages/home.jsx | 136 -
.../renderer/pages/login-callback.jsx | 63 -
airavata-local-agent/renderer/pages/login.jsx | 271 -
airavata-local-agent/renderer/pages/tabs-view.jsx | 759 -
.../renderer/pages/temp/docker-page.jsx | 453 -
.../renderer/pages/temp/page-with-vnc-test.jsx | 35 -
.../renderer/pages/temp/vnc-client.jsx | 179 -
.../renderer/public/images/cs-logo.png | Bin 34102 -> 0 bytes
.../renderer/public/images/jupyter_logo.png | Bin 53006 -> 0 bytes
.../renderer/public/images/logo.png | Bin 120101 -> 0 bytes
airavata-local-agent/resources/icon.icns | Bin 154042 -> 0 bytes
airavata-local-agent/resources/icon.ico | Bin 189104 -> 0 bytes
airavata-mcp-client-chatbot/README.md | 2 -
airavata-mcp-client-chatbot/cli/package-lock.json | 227 -
airavata-mcp-client-chatbot/cli/package.json | 17 -
airavata-mcp-client-chatbot/cli/tsconfig.json | 113 -
.../mcp_client/initial_ollama_prompting.py | 39 -
.../mcp_client/requirements.txt | Bin 6496 -> 0 bytes
airavata-mcp-client-chatbot/widget/.gitignore | 23 -
airavata-mcp-client-chatbot/widget/README.md | 46 -
.../widget/package-lock.json | 17597 -------------
airavata-mcp-client-chatbot/widget/package.json | 45 -
.../widget/public/favicon.ico | Bin 3870 -> 0 bytes
.../widget/public/index.html | 43 -
.../widget/public/logo192.png | Bin 5347 -> 0 bytes
.../widget/public/logo512.png | Bin 9664 -> 0 bytes
.../widget/public/manifest.json | 25 -
.../widget/public/robots.txt | 3 -
airavata-mcp-client-chatbot/widget/src/App.css | 39 -
.../widget/src/App.test.tsx | 9 -
airavata-mcp-client-chatbot/widget/src/App.tsx | 24 -
.../widget/src/components/Chatbox.tsx | 59 -
airavata-mcp-client-chatbot/widget/src/index.css | 13 -
airavata-mcp-client-chatbot/widget/src/index.tsx | 19 -
airavata-mcp-client-chatbot/widget/src/logo.svg | 1 -
.../widget/src/react-app-env.d.ts | 1 -
.../widget/src/reportWebVitals.ts | 15 -
.../widget/src/setupTests.ts | 5 -
airavata-mcp-client-chatbot/widget/tsconfig.json | 26 -
.../airavata_mft/static/common/package-lock.json | 12989 ++++------
airavata-php-gateway/.gitignore | 27 +-
airavata-php-gateway/app/Console/Kernel.php | 39 -
airavata-php-gateway/app/Exceptions/Handler.php | 56 -
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airavata-php-gateway/app/Http/Kernel.php | 70 -
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.../app/Providers/RouteServiceProvider.php | 64 -
airavata-php-gateway/{ => app}/config/app.php | 22 +-
airavata-php-gateway/{ => app}/config/auth.php | 0
airavata-php-gateway/{ => app}/config/cache.php | 0
airavata-php-gateway/{ => app}/config/compile.php | 0
airavata-php-gateway/{ => app}/config/database.php | 0
.../{ => app}/config/email_templates.json | 0
.../{ => app}/config/email_templates.json.template | 0
.../{ => app}/config/local/app.php | 0
.../{ => app}/config/local/database.php | 0
airavata-php-gateway/{ => app}/config/mail.php | 0
.../{ => app}/config/packages/markdown/config.php | 0
.../config/packages/teepluss/theme/config.php | 6 +-
.../config/packages/teepluss/theme/twig.php | 28 +-
.../{ => app}/config/pga_config.php.template | 0
airavata-php-gateway/{ => app}/config/queue.php | 0
airavata-php-gateway/{ => app}/config/remote.php | 0
airavata-php-gateway/{ => app}/config/services.php | 0
airavata-php-gateway/{ => app}/config/session.php | 0
.../{ => app}/config/testing/cache.php | 0
.../{ => app}/config/testing/session.php | 0
airavata-php-gateway/{ => app}/config/view.php | 4 +-
.../{ => app}/config/workbench.php | 0
.../AccountController.php | 26 +-
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.../Controllers => controllers}/BaseController.php | 7 -
.../ComputeResourceController.php | 5 -
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.../FilemanagerController.php | 4 +-
.../GatewayRequestUpdateController.php | 2 -
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.../Controllers => controllers}/HomeController.php | 22 +-
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airavata-php-gateway/app/filters.php | 8 -
.../libraries/Airavata/AiravataServiceProvider.php | 6 +-
.../Airavata/GroupManagerServiceProvider.php | 6 +-
.../libraries/Airavata/IamAdminServiceProvider.php | 6 +-
.../Airavata/TenantProfileServiceProvider.php | 6 +-
.../Airavata/UserProfileServiceProvider.php | 6 +-
.../app/libraries/Keycloak/API/RoleMapper.php | 15 +-
.../app/libraries/Keycloak/Keycloak.php | 2 +-
.../libraries/Keycloak/KeycloakServiceProvider.php | 6 +-
.../app/libraries/Keycloak/KeycloakUtil.php | 13 +-
.../app/libraries/Wsis/WsisServiceProvider.php | 6 +-
airavata-php-gateway/app/routes.php | 12 +-
airavata-php-gateway/app/start/global.php | 6 +-
airavata-php-gateway/app/storage/.gitignore | 1 +
airavata-php-gateway/app/storage/cache/.gitignore | 2 +
airavata-php-gateway/app/storage/logs/.gitignore | 2 +
airavata-php-gateway/app/storage/meta/.gitignore | 2 +
.../app/storage/sessions/.gitignore | 2 +
airavata-php-gateway/app/storage/views/.gitignore | 2 +
.../views/account/create.blade.php | 12 +-
.../views/account/credential-store.blade.php | 2 +-
.../views/account/dashboard.blade.php | 10 +-
.../views/account/forgot-password.blade.php | 0
.../views/account/login-desktop.blade.php | 0
.../views/account/login.blade.php | 0
.../views/account/request-allocation.blade.php | 0
.../views/account/reset-password.blade.php | 2 +-
.../views/account/settings.blade.php | 0
.../views/account/update.blade.php | 2 +-
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.../views/account/verify-human.blade.php | 2 +-
.../views/admin/create-gateway.blade.php | 20 +-
.../views/admin/experiment-statistics.blade.php | 0
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.../views/datacat/select.blade.php | 0
.../views/datacat/summary.blade.php | 0
.../views/emails/auth/reminder.blade.php | 0
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.../views/experiment/browse.blade.php | 0
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.../views/gateway/create.blade.php | 0
.../views/group/browse.blade.php | 0
.../views/group/create.blade.php | 0
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.../views/group/summary.blade.php | 0
.../{resources => app}/views/home.blade.php | 25 +
.../views/layout/basic.blade.php | 26 +-
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.../views/layout/fixed-footer.blade.php | 0
.../views/layout/fixed-header.blade.php | 0
.../views/layout/fixed-scripts.blade.php | 0
.../{resources => app}/views/pages.blade.php | 0
.../views/partials/add-gateway-block.blade.php | 0
.../partials/auto-provisioned-accounts.blade.php | 0
.../compute-resource-preferences.blade.php | 0
.../views/partials/dashboard-block.blade.php | 0
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.../views/partials/experiment-container.blade.php | 0
.../views/partials/experiment-info.blade.php | 0
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app}/config/packages/teepluss/theme/config.php (99%)
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rename airavata-php-gateway/{resources =>
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rename airavata-php-gateway/{resources => app}/views/experiment/edit.blade.php
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rename airavata-php-gateway/{resources =>
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rename airavata-php-gateway/{resources => app}/views/files/browse.blade.php
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rename airavata-php-gateway/{resources => app}/views/gateway/browse.blade.php
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