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omit 0c3a8bd8f4 reorganize source to match api and service abstractions
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Summary of changes:
.../accountprovisioning/SSHAccountManager.java | 4 ++--
.../org/apache/airavata/agents/api/AgentUtils.java | 4 ++--
.../airavata/api/server/AiravataAPIServer.java | 6 +++---
.../handler/AiravataServerHandler.java | 4 ++--
.../airavata/api/{ => server/util}/Constants.java | 2 +-
.../monitoring}/ClusterStatusMonitorJob.java | 2 +-
.../ClusterStatusMonitorJobScheduler.java | 2 +-
.../ComputationalResourceMonitoringService.java | 6 +++---
.../monitoring}/job/ComputeResourceMonitor.java | 2 +-
.../resource/monitoring}/job/MonitoringJob.java | 8 ++++----
.../monitoring}/job/output/OutputParser.java | 2 +-
.../monitoring}/job/output/OutputParserImpl.java | 22 ++++++++++++----------
.../resource/monitoring}/utils/Constants.java | 2 +-
.../client/CredentialStoreClientFactory.java | 2 +-
.../credential/store/client/TestSSLClient.java | 0
.../store}/server/CredentialStoreServer.java | 3 +--
.../server}/CredentialStoreServerHandler.java | 2 +-
.../event/manager}/DBEventManagerRunner.java | 4 ++--
.../messaging/DBEventManagerException.java | 2 +-
.../messaging/DBEventManagerMessagingFactory.java | 4 ++--
.../messaging/impl/DBEventMessageHandler.java | 8 ++++----
.../event/manager}/utils/Constants.java | 2 +-
.../manager}/utils/DbEventManagerZkUtils.java | 2 +-
.../apache/airavata/helix/core/AbstractTask.java | 4 ++--
.../helix/impl/participant/GlobalParticipant.java | 2 +-
.../airavata/helix/impl/task/AiravataTask.java | 4 ++--
.../airavata/helix/impl/task/TaskContext.java | 4 ++--
.../airavata/helix/impl/task/env/EnvSetupTask.java | 2 +-
.../helix/impl/task/parsing/DataParsingTask.java | 4 ++--
.../helix/impl/task/staging/ArchiveTask.java | 2 +-
.../helix/impl/task/staging/DataStagingTask.java | 2 +-
.../impl/task/staging/InputDataStagingTask.java | 2 +-
.../impl/task/staging/OutputDataStagingTask.java | 2 +-
.../task/submission/DefaultJobSubmissionTask.java | 2 +-
.../helix/impl/workflow/ParserWorkflowManager.java | 4 ++--
.../helix/impl/workflow/PostWorkflowManager.java | 4 ++--
.../helix/impl/workflow/PreWorkflowManager.java | 4 ++--
.../metadata/analyzer}/DataInterpreterService.java | 2 +-
.../rescheduler}/ProcessReschedulingService.java | 3 +--
.../client/OrchestratorClientFactory.java | 2 +-
.../orchestrator/core/utils/OrchestratorUtils.java | 2 +-
.../core/validator/impl/BatchQueueValidator.java | 2 +-
.../impl/GroupResourceProfileValidator.java | 2 +-
.../cpi/impl/SimpleOrchestratorImpl.java | 2 +-
.../server/OrchestratorServer.java | 6 ++++--
.../server}/OrchestratorServerHandler.java | 2 +-
.../monitoring}/CountMonitor.java | 2 +-
.../monitoring}/GaugeMonitor.java | 2 +-
.../monitoring}/MonitoringServer.java | 2 +-
.../api/client/RegistryServiceClientFactory.java | 2 +-
.../api/service}/RegistryAPIServer.java | 6 +++---
.../service}/handler/RegistryServerHandler.java | 2 +-
.../registry/api/service/{ => util}/Constants.java | 2 +-
.../airavata/{api => server}/ServerMain.java | 4 ++--
.../apache/airavata/service/AiravataService.java | 3 ++-
.../airavata/service/GroupManagerService.java | 4 ++--
.../apache/airavata/service/IamAdminService.java | 8 ++++----
.../airavata/service/TenantProfileService.java | 6 +++---
.../airavata/service/UserProfileService.java | 10 +++++-----
.../client/ProfileServiceClientFactory.java | 2 +-
.../commons/repositories/AbstractRepository.java | 6 +++---
.../commons/tenant/entities/GatewayEntity.java | 2 +-
.../user/entities/CustomizedDashboardEntity.java | 2 +-
.../user/entities/NSFDemographicsEntity.java | 2 +-
.../commons/user/entities/UserProfileEntity.java | 2 +-
.../profile/commons/utils/Committer.java | 2 +-
.../profile/commons/utils/JPAConstants.java | 2 +-
.../profile/commons/utils/JPAUtils.java | 2 +-
.../commons/utils/ObjectMapperSingleton.java | 2 +-
.../commons/utils/ProfileServiceJDBCConfig.java | 2 +-
.../profile/commons/utils/QueryConstants.java | 2 +-
.../{ => service}/profile/commons/utils/Utils.java | 2 +-
.../handlers}/GroupManagerServiceHandler.java | 4 ++--
.../profile/handlers}/IamAdminServicesHandler.java | 4 ++--
.../handlers}/TenantProfileServiceHandler.java | 4 ++--
.../handlers}/UserProfileServiceHandler.java | 4 ++--
.../core/impl/TenantManagementKeycloakImpl.java | 4 ++--
.../core/interfaces/TenantManagementInterface.java | 2 +-
.../profile}/server/ProfileServiceServer.java | 12 ++++++------
.../core/repositories/TenantProfileRepository.java | 8 ++++----
.../exceptions/UserProfileRegistryException.java | 2 +-
.../core/repositories/UserProfileRepository.java | 12 ++++++------
.../core/utils/UserProfileCatalogDBInitConfig.java | 2 +-
.../core/utils/UserProfileCatalogJDBCConfig.java | 4 ++--
.../security/AiravataSecurityManager.java | 3 ++-
.../security/GatewayGroupsInitializer.java | 8 ++++----
.../{ => service}/security/IdentityContext.java | 2 +-
.../security/KeyCloakSecurityManager.java | 11 ++++++-----
.../security/SecurityManagerFactory.java | 3 ++-
.../airavata/{ => service}/security/UserInfo.java | 2 +-
.../security/authzcache/AuthzCache.java | 2 +-
.../security/authzcache/AuthzCacheEntry.java | 2 +-
.../security/authzcache/AuthzCacheIndex.java | 2 +-
.../security/authzcache/AuthzCacheManager.java | 2 +-
.../authzcache/AuthzCacheManagerFactory.java | 2 +-
.../security/authzcache/AuthzCachedStatus.java | 2 +-
.../authzcache/DefaultAuthzCacheManager.java | 2 +-
.../security/interceptor/SecurityCheck.java | 2 +-
.../security/interceptor/SecurityInterceptor.java | 10 +++++-----
.../security/interceptor/SecurityModule.java | 2 +-
.../SharingRegistryServiceClientFactory.java | 2 +-
.../db/repositories/PermissionTypeRepository.java | 2 +-
.../messaging/SharingServiceDBEventHandler.java | 4 ++--
.../migrator/airavata/AiravataDataMigrator.java | 14 +++++++-------
.../sharing/registry/server/ServerMain.java | 1 -
.../registry}/server/SharingRegistryServer.java | 3 +--
.../server}/SharingRegistryServerHandler.java | 4 ++--
.../admin/services/core/tests/SetupNewGateway.java | 4 ++--
.../security/GatewayGroupsInitializerTest.java | 2 +-
.../security/KeyCloakSecurityManagerTest.java | 15 ++++++++-------
.../registry/SharingRegistryServerHandlerTest.java | 2 +-
.../registry/SharingRegistryServiceTest.java | 2 +-
.../airavata/ide/integration/APIServerStarter.java | 12 ++++++------
.../airavata/research/service/AiravataService.java | 2 +-
114 files changed, 218 insertions(+), 213 deletions(-)
rename airavata-api/src/main/java/org/apache/airavata/api/{ =>
server}/handler/AiravataServerHandler.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/api/{ =>
server/util}/Constants.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/cluster =>
cluster/monitoring}/ClusterStatusMonitorJob.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/cluster =>
cluster/monitoring}/ClusterStatusMonitorJobScheduler.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{api/server =>
compute/resource/monitoring}/ComputationalResourceMonitoringService.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/compute =>
compute/resource/monitoring}/job/ComputeResourceMonitor.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/compute =>
compute/resource/monitoring}/job/MonitoringJob.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/compute =>
compute/resource/monitoring}/job/output/OutputParser.java (94%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/compute =>
compute/resource/monitoring}/job/output/OutputParserImpl.java (72%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/compute =>
compute/resource/monitoring}/utils/Constants.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
credential/store}/client/CredentialStoreClientFactory.java (97%)
rename airavata-api/src/{test =>
main}/java/org/apache/airavata/credential/store/client/TestSSLClient.java (100%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
credential/store}/server/CredentialStoreServer.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
credential/store/server}/CredentialStoreServerHandler.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{api/server =>
db/event/manager}/DBEventManagerRunner.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/dbevent =>
db/event/manager}/messaging/DBEventManagerException.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/dbevent =>
db/event/manager}/messaging/DBEventManagerMessagingFactory.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/dbevent =>
db/event/manager}/messaging/impl/DBEventMessageHandler.java (94%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/dbevent =>
db/event/manager}/utils/Constants.java (94%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/dbevent =>
db/event/manager}/utils/DbEventManagerZkUtils.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{api/server =>
metascheduler/metadata/analyzer}/DataInterpreterService.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{api/server =>
metascheduler/process/scheduling/engine/rescheduler}/ProcessReschedulingService.java
(96%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
orchestrator}/client/OrchestratorClientFactory.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
orchestrator}/server/OrchestratorServer.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
orchestrator/server}/OrchestratorServerHandler.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/platform =>
patform/monitoring}/CountMonitor.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/platform =>
patform/monitoring}/GaugeMonitor.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{monitor/platform =>
patform/monitoring}/MonitoringServer.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
registry}/api/client/RegistryServiceClientFactory.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api/server =>
registry/api/service}/RegistryAPIServer.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
registry/api/service}/handler/RegistryServerHandler.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/registry/api/service/{
=> util}/Constants.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
server}/ServerMain.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
service/profile}/client/ProfileServiceClientFactory.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/repositories/AbstractRepository.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/tenant/entities/GatewayEntity.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/user/entities/CustomizedDashboardEntity.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/user/entities/NSFDemographicsEntity.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/user/entities/UserProfileEntity.java (99%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/Committer.java (93%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/JPAConstants.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/JPAUtils.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/ObjectMapperSingleton.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/ProfileServiceJDBCConfig.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/QueryConstants.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/commons/utils/Utils.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
service/profile/handlers}/GroupManagerServiceHandler.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
service/profile/handlers}/IamAdminServicesHandler.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
service/profile/handlers}/TenantProfileServiceHandler.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
service/profile/handlers}/UserProfileServiceHandler.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/iam/admin/services/core/impl/TenantManagementKeycloakImpl.java
(99%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/iam/admin/services/core/interfaces/TenantManagementInterface.java
(98%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
service/profile}/server/ProfileServiceServer.java (93%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/tenant/core/repositories/TenantProfileRepository.java (93%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/user/core/exceptions/UserProfileRegistryException.java (93%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/user/core/repositories/UserProfileRepository.java (91%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/user/core/utils/UserProfileCatalogDBInitConfig.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/profile/user/core/utils/UserProfileCatalogJDBCConfig.java (91%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/AiravataSecurityManager.java (94%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/GatewayGroupsInitializer.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/IdentityContext.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/KeyCloakSecurityManager.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/SecurityManagerFactory.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/UserInfo.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCache.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCacheEntry.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCacheIndex.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCacheManager.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCacheManagerFactory.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/AuthzCachedStatus.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/authzcache/DefaultAuthzCacheManager.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/interceptor/SecurityCheck.java (95%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/interceptor/SecurityInterceptor.java (92%)
rename airavata-api/src/main/java/org/apache/airavata/{ =>
service}/security/interceptor/SecurityModule.java (96%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
sharing/registry}/client/SharingRegistryServiceClientFactory.java (97%)
rename airavata-api/src/main/java/org/apache/airavata/{api =>
sharing/registry}/server/SharingRegistryServer.java (98%)
rename airavata-api/src/main/java/org/apache/airavata/{api/handler =>
sharing/registry/server}/SharingRegistryServerHandler.java (99%)
rename airavata-api/src/test/java/org/apache/airavata/{ =>
service}/profile/iam/admin/services/core/tests/SetupNewGateway.java (97%)
rename airavata-api/src/test/java/org/apache/airavata/{ =>
service}/security/GatewayGroupsInitializerTest.java (99%)
rename airavata-api/src/test/java/org/apache/airavata/{ =>
service}/security/KeyCloakSecurityManagerTest.java (96%)
