This is an automated email from the ASF dual-hosted git repository.
yasith pushed a change to branch service-layer-improvements
in repository https://gitbox.apache.org/repos/asf/airavata.git
from 02297769c1 unify the distribution binary, fix test cases, fix bugs
add bab1c85154 fix test cases and make sure all tests pass
No new revisions were added by this update.
Summary of changes:
.../accountprovisioning/SSHAccountManager.java | 2 +
.../common/repositories/AbstractRepository.java | 33 ++-
.../org/apache/airavata/common/utils/JPAUtils.java | 147 -----------
...{DozerMapperConfig.java => ExecutorConfig.java} | 36 +--
.../java/org/apache/airavata/config/JpaConfig.java | 282 ++++++++++++++-------
.../airavata/config/SecurityManagerConfig.java | 48 +++-
.../airavata/helix/adaptor/SSHJAgentAdaptor.java | 2 +
.../airavata/helix/adaptor/SSHJStorageAdaptor.java | 2 +
.../airavata/helix/agent/ssh/SshAgentAdaptor.java | 2 +
.../agent/storage/StorageResourceAdaptorImpl.java | 2 +
.../helix/core/participant/HelixParticipant.java | 19 +-
.../helix/core/support/TaskHelperImpl.java | 2 +
.../core/support/adaptor/AdaptorSupportImpl.java | 14 +-
.../airavata/helix/impl/task/AWSTaskFactory.java | 3 +
.../airavata/helix/impl/task/AiravataTask.java | 3 +
.../airavata/helix/impl/task/SlurmTaskFactory.java | 3 +
.../airavata/helix/impl/task/TaskFactory.java | 3 +
.../helix/impl/task/aws/utils/AWSTaskUtil.java | 3 +
.../task/submission/config/GroovyMapBuilder.java | 3 +
.../helix/impl/workflow/ParserWorkflowManager.java | 16 +-
.../helix/impl/workflow/PostWorkflowManager.java | 29 ++-
.../helix/impl/workflow/PreWorkflowManager.java | 3 +
.../manager/dbevent/DBEventManagerRunner.java | 2 +-
.../messaging/DBEventManagerMessagingFactory.java | 13 +-
.../messaging/impl/DBEventMessageHandler.java | 32 +--
.../messaging/core/impl/RabbitMQPublisher.java | 16 +-
.../airavata/metascheduler/core/utils/Utils.java | 19 +-
.../metadata/analyzer/impl/DataAnalyzerImpl.java | 2 +
.../scheduling/api/ProcessSchedulerImpl.java | 2 +
.../ComputeResourceSelectionPolicyImpl.java | 12 +-
.../DefaultComputeResourceSelectionPolicy.java | 11 +-
.../selection/MultipleComputeResourcePolicy.java | 10 +-
.../rescheduler/ExponentialBackOffReScheduler.java | 28 +-
.../engine/rescheduler/ProcessScannerImpl.java | 2 +
.../apache/airavata/monitor/AbstractMonitor.java | 3 +
.../monitor/cluster/ClusterStatusMonitorJob.java | 26 +-
.../airavata/monitor/email/EmailBasedMonitor.java | 3 +
.../airavata/monitor/realtime/RealtimeMonitor.java | 3 +
.../orchestrator/impl/SimpleOrchestratorImpl.java | 4 +
.../orchestrator/utils/OrchestratorUtils.java | 4 +
.../validation/impl/ValidationServiceImpl.java | 4 +
.../validator/BatchQueueValidator.java | 4 +
.../validator/GroupResourceProfileValidator.java | 4 +
.../airavata/profile/mappers/GatewayMapper.java | 52 ++++
.../profile/mappers/UserProfileMapper.java | 62 +++++
.../profile/repositories/AbstractRepository.java | 142 -----------
.../apache/airavata/profile/utils/JPAUtils.java | 93 -------
.../utils/UserProfileCatalogJDBCConfig.java | 20 +-
.../org/apache/airavata/profile/utils/Utils.java | 53 +---
.../registry/mappers/AiravataWorkflowMapper.java | 64 +++++
.../mappers/ApplicationDeploymentMapper.java | 54 ++++
.../mappers/ApplicationInterfaceMapper.java | 30 +--
.../registry/mappers}/ApplicationModuleMapper.java | 27 +-
.../AwsComputeResourcePreferenceMapper.java | 25 +-
.../registry/mappers}/BatchQueueMapper.java | 29 ++-
.../mappers/BatchQueueResourcePolicyMapper.java | 63 +++++
.../mappers}/CloudJobSubmissionMapper.java | 25 +-
.../registry/mappers/CommandObjectMapper.java | 60 +++++
.../ComputationalResourceSchedulingMapper.java | 28 +-
...uteResourceDataMovementInterfaceBaseMapper.java | 55 ++++
...ComputeResourceDataMovementInterfaceMapper.java | 53 ++++
.../registry/mappers/ComputeResourceMapper.java | 55 ++++
.../ComputeResourcePolicyMapper.java} | 27 +-
.../mappers/ComputeResourcePreferenceMapper.java | 76 ++++++
.../mappers/ComputeResourceReservationMapper.java | 51 ++++
.../mappers/DataMovementInterfaceMapper.java | 55 ++++
.../registry/mappers/DataProductMapper.java | 57 +++++
.../mappers/DataReplicaLocationMapper.java | 64 +++++
.../registry/mappers/EntityMapperConfig.java | 16 +-
.../registry/mappers/ErrorModelMapper.java | 102 ++++++++
.../registry/mappers/ExperimentMapper.java | 62 +++++
.../registry/mappers/ExperimentStatusMapper.java | 49 ++++
.../registry/mappers/ExperimentSummaryMapper.java | 54 ++++
.../GatewayGroupsMapper.java} | 23 +-
.../airavata/registry/mappers/GatewayMapper.java | 52 ++++
.../mappers/GatewayResourceProfileMapper.java | 48 ++++
.../GatewayUsageReportingCommandMapper.java | 25 +-
.../mappers}/GridFTPDataMovementMapper.java | 25 +-
.../GroupAccountSSHProvisionerConfigMapper.java | 27 +-
.../GroupComputeResourcePreferenceMapper.java | 57 +++++
.../mappers/GroupResourceProfileMapper.java | 62 +++++
.../mappers/InputDataObjectTypeMapper.java | 58 +++++
.../airavata/registry/mappers/JobModelMapper.java | 51 ++++
.../airavata/registry/mappers/JobStatusMapper.java | 49 ++++
.../mappers}/JobSubmissionInterfaceMapper.java | 27 +-
.../registry/mappers/LocalDataMovementMapper.java | 25 +-
.../registry/mappers/LocalSubmissionMapper.java | 25 +-
.../registry/mappers/NotificationMapper.java | 60 +++++
.../mappers/OutputDataObjectTypeMapper.java | 58 +++++
.../mappers/ParserConnectorInputMapper.java | 44 ++++
.../registry/mappers/ParserConnectorMapper.java | 47 ++++
.../registry/mappers/ParserInputMapper.java | 56 ++++
.../ParserMapper.java} | 27 +-
.../registry/mappers/ParserOutputMapper.java | 56 ++++
.../mappers}/ParsingTemplateInputMapper.java | 28 +-
.../registry/mappers/ParsingTemplateMapper.java | 30 +--
.../airavata/registry/mappers/ProcessMapper.java | 69 +++++
.../registry/mappers/ProcessStatusMapper.java | 50 ++++
.../registry/mappers/ProcessWorkflowMapper.java | 57 +++++
.../airavata/registry/mappers/ProjectMapper.java | 50 ++++
.../registry/mappers/QueueStatusMapper.java | 47 ++++
.../mappers}/ResourceJobManagerMapper.java | 25 +-
.../registry/mappers}/SCPDataMovementMapper.java | 25 +-
.../registry/mappers}/SSHJobSubmissionMapper.java | 25 +-
.../registry/mappers/SetEnvPathsMapper.java | 67 +++++
.../SlurmComputeResourcePreferenceMapper.java | 43 ++++
.../StoragePreferenceMapper.java} | 28 +-
.../registry/mappers/StorageResourceMapper.java | 56 ++++
.../airavata/registry/mappers/TaskModelMapper.java | 69 +++++
.../registry/mappers/TaskStatusMapper.java | 49 ++++
.../mappers}/UnicoreDataMovementMapper.java | 25 +-
.../mappers}/UnicoreJobSubmissionMapper.java | 25 +-
.../UserComputeResourcePreferenceMapper.java | 60 +++++
.../mappers/UserConfigurationDataMapper.java | 101 ++++++++
.../UserMapper.java} | 31 ++-
.../mappers/UserResourceProfileMapper.java | 48 ++++
.../mappers/UserStoragePreferenceMapper.java | 44 ++++
.../RegistryServiceDBEventMessagingFactory.java | 13 +-
.../registry/repositories/AbstractRepository.java | 33 ++-
.../appcatalog/AppCatAbstractRepository.java | 31 +--
.../expcatalog/ExpCatAbstractRepository.java | 29 +--
.../replicacatalog/RepCatAbstractRepository.java | 29 +--
.../WorkflowCatAbstractRepository.java | 29 +--
.../services/ApplicationDeploymentService.java | 112 ++++++--
.../services/ApplicationInterfaceService.java | 61 +++--
.../registry/services/BaseErrorService.java | 77 +++++-
.../registry/services/ComputeResourceService.java | 222 +++++++++++-----
.../registry/services/DataProductService.java | 20 +-
.../services/DataReplicaLocationService.java | 20 +-
.../registry/services/ExperimentErrorService.java | 16 +-
.../registry/services/ExperimentInputService.java | 16 +-
.../registry/services/ExperimentOutputService.java | 17 +-
.../registry/services/ExperimentService.java | 55 ++--
.../registry/services/ExperimentStatusService.java | 15 +-
.../services/ExperimentSummaryService.java | 16 +-
.../registry/services/GatewayGroupsService.java | 19 +-
.../airavata/registry/services/GatewayService.java | 17 +-
.../GatewayUsageReportingCommandService.java | 13 +-
.../services/GroupResourceProfileService.java | 248 ++++++++++++++----
.../services/GwyResourceProfileService.java | 36 +--
.../airavata/registry/services/JobService.java | 37 ++-
.../registry/services/JobStatusService.java | 14 +-
.../registry/services/NotificationService.java | 51 +++-
.../registry/services/ParserInputService.java | 14 +-
.../registry/services/ParserOutputService.java | 14 +-
.../airavata/registry/services/ParserService.java | 17 +-
.../registry/services/ParsingTemplateService.java | 20 +-
.../registry/services/ProcessErrorService.java | 21 +-
.../registry/services/ProcessInputService.java | 15 +-
.../registry/services/ProcessOutputService.java | 15 +-
.../airavata/registry/services/ProcessService.java | 53 ++--
.../registry/services/ProcessStatusService.java | 24 +-
.../registry/services/ProcessWorkflowService.java | 16 +-
.../airavata/registry/services/ProjectService.java | 26 +-
.../registry/services/QueueStatusService.java | 17 +-
.../registry/services/StorageResourceService.java | 58 +++--
.../registry/services/TaskErrorService.java | 21 +-
.../airavata/registry/services/TaskService.java | 42 ++-
.../registry/services/TaskStatusService.java | 14 +-
.../services/UserResourceProfileService.java | 39 +--
.../airavata/registry/services/UserService.java | 14 +-
.../registry/services/WorkflowService.java | 32 ++-
.../airavata/registry/utils/CustomBeanFactory.java | 144 -----------
.../utils/DozerConverter/CsvStringConverter.java | 53 ----
.../utils/DozerConverter/StorageDateConverter.java | 51 ----
.../registry/utils/JPAUtil/AppCatalogJPAUtils.java | 56 ----
.../registry/utils/JPAUtil/ExpCatalogJPAUtils.java | 53 ----
.../registry/utils/JPAUtil/RepCatalogJPAUtils.java | 56 ----
.../utils/JPAUtil/WorkflowCatalogJPAUtils.java | 54 ----
.../utils/migration/MappingToolRunner.java | 94 -------
.../security/GatewayGroupsInitializer.java | 2 +
.../airavata/security/KeyCloakSecurityManager.java | 2 +
.../authzcache/AuthzCacheManagerFactory.java | 32 ++-
.../security/interceptor/SecurityInterceptor.java | 2 +
.../security/interceptor/SecurityModule.java | 2 +
.../apache/airavata/service/AiravataService.java | 55 +++-
.../airavata/service/SharingRegistryService.java | 4 +-
.../service/application/ApplicationService.java | 127 +++++++++-
.../application/impl/ApplicationServiceImpl.java | 159 ------------
.../airavata/service/data/DataProductService.java | 78 +++++-
.../service/data/impl/DataProductServiceImpl.java | 108 --------
.../service/experiment/ExperimentService.java | 152 +++++++++--
.../experiment/impl/ExperimentServiceImpl.java | 187 --------------
.../service/notification/NotificationService.java | 77 +++++-
.../notification/impl/NotificationServiceImpl.java | 106 --------
.../orchestrator/OrchestratorRegistryService.java | 1 +
.../service/orchestrator/OrchestratorService.java | 13 +-
.../service/profile/TenantProfileService.java | 44 ++--
.../service/profile/UserProfileService.java | 280 +++++++++++++++-----
.../airavata/service/project/ProjectService.java | 86 ++++++-
.../service/project/impl/ProjectServiceImpl.java | 117 ---------
.../airavata/service/registry/RegistryService.java | 22 +-
.../service/security/AuthorizationService.java | 189 +++++++++++++-
.../service/security/CredentialStoreService.java | 2 -
.../service/security/GroupManagerService.java | 30 ++-
.../airavata/service/security/IamAdminService.java | 6 +-
.../security/impl/AuthorizationServiceImpl.java | 217 ----------------
.../airavata/service/sharing/SharingManager.java | 208 ++++++++++++++-
.../service/sharing/impl/SharingManagerImpl.java | 236 -----------------
.../sharing/entities/GroupAdminEntity.java | 4 +-
.../DomainMapper.java} | 24 +-
.../airavata/sharing/mappers/EntityMapper.java | 28 +-
.../EntityTypeMapper.java} | 25 +-
.../GroupAdminMapper.java} | 25 +-
.../sharing/mappers/GroupMembershipMapper.java | 28 +-
.../PermissionTypeMapper.java} | 26 +-
.../airavata/sharing/mappers/SharingMapper.java | 56 ++++
.../UserGroupMapper.java} | 25 +-
.../UserMapper.java} | 25 +-
.../SharingServiceDBEventMessagingFactory.java | 14 +-
.../sharing/repositories/AbstractRepository.java | 231 -----------------
.../airavata/sharing/services/DomainService.java | 16 +-
.../airavata/sharing/services/EntityService.java | 20 +-
.../sharing/services/EntityTypeService.java | 16 +-
.../sharing/services/GroupAdminService.java | 14 +-
.../sharing/services/GroupMembershipService.java | 30 ++-
.../sharing/services/PermissionTypeService.java | 16 +-
.../airavata/sharing/services/SharingService.java | 22 +-
.../sharing/services/UserGroupService.java | 18 +-
.../airavata/sharing/services/UserService.java | 18 +-
.../apache/airavata/sharing/utils/JPAUtils.java | 72 ------
.../src/main/resources/META-INF/persistence.xml | 221 ----------------
airavata-api/src/main/resources/dozer_mapping.xml | 84 ------
.../SSHAccountProvisionerFactoryTest.java | 6 +-
.../airavata/accountprovisioning/SSHUtilTest.java | 7 +-
.../common/utils/ApplicationSettingsTest.java | 11 +-
.../airavata/common/utils/NameValidatorTest.java | 11 +-
.../airavata/common/utils/SecurityUtilTest.java | 8 +-
.../config/BackgroundServicesStartupTest.java | 178 +++++++++++++
.../apache/airavata/config/MinimalStartupTest.java | 195 ++++++++++++++
.../airavata/config/RestModeStartupTest.java | 158 ++++++++++++
.../airavata/config/SchemaValidationTest.java | 205 ++++++---------
.../airavata/config/ThriftModeStartupTest.java | 136 ++++++++++
.../config/UnifiedApplicationStartupTest.java | 259 +++++++++++++++++++
.../airavata/credential/SSHCredentialTest.java | 13 +-
.../apache/airavata/credential/SSHSummaryTest.java | 13 +-
.../orchestrator/core/BaseOrchestratorTest.java | 5 +-
.../orchestrator/core/NewOrchestratorTest.java | 5 +-
.../repositories/WorkspaceRepositoryTest.java | 26 +-
.../ApplicationDeploymentRepositoryTest.java | 31 ++-
.../ApplicationInterfaceRepositoryTest.java | 12 +-
.../appcatalog/ComputeResourceRepositoryTest.java | 56 ++--
.../appcatalog/GatewayGroupsRepositoryTest.java | 17 +-
.../appcatalog/GatewayProfileRepositoryTest.java | 17 +-
.../GroupResourceProfileRepositoryTest.java | 31 ++-
.../JobSubmissionInterfaceRepositoryTest.java | 39 +--
.../appcatalog/StorageResourceRepositoryTest.java | 36 +--
.../UserResourceProfileRepositoryTest.java | 35 +--
.../expcatalog/ExperimentErrorRepositoryTest.java | 36 +--
.../expcatalog/ExperimentInputRepositoryTest.java | 37 +--
.../expcatalog/ExperimentOutputRepositoryTest.java | 36 +--
.../expcatalog/ExperimentRepositoryTest.java | 37 +--
.../expcatalog/ExperimentStatusRepositoryTest.java | 36 +--
.../ExperimentSummaryRepositoryTest.java | 36 +--
.../expcatalog/GatewayRepositoryTest.java | 36 +--
.../repositories/expcatalog/JobRepositoryTest.java | 36 +--
.../expcatalog/JobStatusRepositoryTest.java | 36 +--
.../expcatalog/NotificationRepositoryTest.java | 36 +--
.../expcatalog/ProcessErrorRepositoryTest.java | 36 +--
.../expcatalog/ProcessInputRepositoryTest.java | 36 +--
.../expcatalog/ProcessOutputRepositoryTest.java | 36 +--
.../expcatalog/ProcessRepositoryTest.java | 36 +--
.../expcatalog/ProcessStatusRepositoryTest.java | 36 +--
.../expcatalog/ProjectRepositoryTest.java | 35 +--
.../expcatalog/QueueStatusRepositoryTest.java | 36 +--
.../expcatalog/TaskErrorRepositoryTest.java | 36 +--
.../expcatalog/TaskRepositoryTest.java | 36 +--
.../expcatalog/TaskStatusRepositoryTest.java | 36 +--
.../expcatalog/UserRepositoryTest.java | 36 +--
.../replicacatalog/DataProductRepositoryTest.java | 36 +--
.../DataReplicaLocationRepositoryTest.java | 30 ++-
.../workflowcatalog/WorkflowRepositoryTest.java | 38 +--
.../registry/utils/CustomBeanFactoryTest.java | 128 ----------
.../security/GatewayGroupsInitializerTest.java | 8 +-
.../security/KeyCloakSecurityManagerTest.java | 51 +++-
.../AiravataServiceIntegrationTest.java | 17 +-
.../GroupManagerServiceIntegrationTest.java | 78 +++++-
.../OrchestratorServiceIntegrationTest.java | 4 +-
.../integration/ServiceIntegrationTestBase.java | 111 ++++++--
.../SlurmComputeResourceIntegrationTest.java | 12 +-
.../TenantProfileServiceIntegrationTest.java | 53 ++--
...countprovisioning.SSHAccountProvisionerProvider | 2 +
.../src/test/resources/application.properties | 27 ++
airavata-api/src/test/resources/log4j2.xml | 21 +-
modules/distribution/pom.xml | 80 +++++-
.../airavata/ide/integration/APIServerStarter.java | 1 -
.../airavata/ide/integration/JobEngineStarter.java | 1 -
.../ide/integration/JobMonitorStarter.java | 1 -
.../apache/airavata/server/UnifiedApplication.java | 69 ++---
.../server/applications/AiravataApplication.java | 32 +--
.../server/applications/RestProxyApplication.java | 21 +-
.../server/bootstrap/MappingToolRunner.java | 126 +++++++++
.../bootstrap}/MigrationSchemaGenerator.java | 12 +-
modules/thrift-api/pom.xml | 6 +
.../thriftapi/handler/AiravataServiceHandler.java | 5 +-
.../mapper/CertificateCredentialMapper.java | 10 +
.../airavata/thriftapi/mapper/ModelMapper.java | 6 +-
.../thriftapi/mapper/PasswordCredentialMapper.java | 4 +
.../mapper/ProcessTerminateEventMapper.java | 6 +
.../thriftapi/mapper/SSHCredentialMapper.java | 6 +
.../UserComputeResourcePreferenceMapper.java | 6 +
.../thriftapi/server/AiravataServiceServer.java | 9 +-
.../thriftapi/server/CredentialServiceServer.java | 8 +-
.../server/OrchestratorServiceServer.java | 8 +-
.../thriftapi/server/ProfileServiceServer.java | 28 +-
.../thriftapi/server/RegistryServiceServer.java | 10 +-
.../thriftapi/server/SharingRegistryServer.java | 12 +-
.../airavata/thriftapi/util/ThriftClientPool.java | 261 -------------------
.../thriftapi/util/ThriftClientPoolTest.java | 99 --------
309 files changed, 8349 insertions(+), 5660 deletions(-)
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/common/utils/JPAUtils.java
rename
airavata-api/src/main/java/org/apache/airavata/config/{DozerMapperConfig.java
=> ExecutorConfig.java} (51%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/profile/mappers/GatewayMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/profile/mappers/UserProfileMapper.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/profile/repositories/AbstractRepository.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/profile/utils/JPAUtils.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/AiravataWorkflowMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ApplicationDeploymentMapper.java
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/ApplicationInterfaceDescriptionMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ApplicationInterfaceMapper.java
(52%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/ApplicationModuleMapper.java
(54%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/AwsComputeResourcePreferenceMapper.java
(54%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/BatchQueueMapper.java
(52%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/BatchQueueResourcePolicyMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/CloudJobSubmissionMapper.java
(57%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/CommandObjectMapper.java
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/ComputationalResourceSchedulingModelMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputationalResourceSchedulingMapper.java
(51%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputeResourceDataMovementInterfaceBaseMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputeResourceDataMovementInterfaceMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputeResourceMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/registry/{repositories/appcatalog/ComputeResourcePolicyRepository.java
=> mappers/ComputeResourcePolicyMapper.java} (53%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputeResourcePreferenceMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ComputeResourceReservationMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/DataMovementInterfaceMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/DataProductMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/DataReplicaLocationMapper.java
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/ModelMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/EntityMapperConfig.java
(62%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ErrorModelMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ExperimentMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ExperimentStatusMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ExperimentSummaryMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/registry/{repositories/appcatalog/GatewayGroupsRepository.java
=> mappers/GatewayGroupsMapper.java} (60%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/GatewayMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/GatewayResourceProfileMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/GatewayUsageReportingCommandMapper.java
(54%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/GridFTPDataMovementMapper.java
(57%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/GroupAccountSSHProvisionerConfigMapper.java
(53%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/GroupComputeResourcePreferenceMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/GroupResourceProfileMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/InputDataObjectTypeMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/JobModelMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/JobStatusMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/JobSubmissionInterfaceMapper.java
(52%)
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/LOCALDataMovementMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/LocalDataMovementMapper.java
(58%)
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/LOCALSubmissionMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/LocalSubmissionMapper.java
(58%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/NotificationMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/OutputDataObjectTypeMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/ParserConnectorInputMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ParserConnectorMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ParserInputMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/registry/{repositories/appcatalog/ParserRepository.java
=> mappers/ParserMapper.java} (60%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ParserOutputMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/ParsingTemplateInputMapper.java
(51%)
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/TenantConfigMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ParsingTemplateMapper.java
(55%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/ProcessMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/ProcessStatusMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/ProcessWorkflowMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/ProjectMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/QueueStatusMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/ResourceJobManagerMapper.java
(57%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/SCPDataMovementMapper.java
(58%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/SSHJobSubmissionMapper.java
(58%)
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/SetEnvPathsMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/SlurmComputeResourcePreferenceMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/registry/{repositories/appcatalog/StoragePrefRepository.java
=> mappers/StoragePreferenceMapper.java} (52%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/StorageResourceMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/TaskModelMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/TaskStatusMapper.java
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/UnicoreDataMovementMapper.java
(57%)
copy {modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper =>
airavata-api/src/main/java/org/apache/airavata/registry/mappers}/UnicoreJobSubmissionMapper.java
(57%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/UserComputeResourcePreferenceMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/mappers/UserConfigurationDataMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/registry/{repositories/expcatalog/UserRepository.java
=> mappers/UserMapper.java} (51%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/UserResourceProfileMapper.java
create mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/mappers/UserStoragePreferenceMapper.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/CustomBeanFactory.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/DozerConverter/CsvStringConverter.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/DozerConverter/StorageDateConverter.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/JPAUtil/AppCatalogJPAUtils.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/JPAUtil/ExpCatalogJPAUtils.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/registry/utils/JPAUtil/RepCatalogJPAUtils.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/JPAUtil/WorkflowCatalogJPAUtils.java
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airavata-api/src/main/java/org/apache/airavata/registry/utils/migration/MappingToolRunner.java
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airavata-api/src/main/java/org/apache/airavata/service/application/impl/ApplicationServiceImpl.java
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airavata-api/src/main/java/org/apache/airavata/service/data/impl/DataProductServiceImpl.java
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airavata-api/src/main/java/org/apache/airavata/service/experiment/impl/ExperimentServiceImpl.java
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airavata-api/src/main/java/org/apache/airavata/service/notification/impl/NotificationServiceImpl.java
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airavata-api/src/main/java/org/apache/airavata/service/project/impl/ProjectServiceImpl.java
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airavata-api/src/main/java/org/apache/airavata/service/security/impl/AuthorizationServiceImpl.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/service/sharing/impl/SharingManagerImpl.java
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/DomainRepository.java
=> mappers/DomainMapper.java} (58%)
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/GroupMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/sharing/mappers/EntityMapper.java
(57%)
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/EntityTypeRepository.java
=> mappers/EntityTypeMapper.java} (57%)
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/GroupAdminRepository.java
=> mappers/GroupAdminMapper.java} (57%)
copy
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/mapper/GlobusJobSubmissionMapper.java
=>
airavata-api/src/main/java/org/apache/airavata/sharing/mappers/GroupMembershipMapper.java
(53%)
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/PermissionTypeRepository.java
=> mappers/PermissionTypeMapper.java} (56%)
create mode 100644
airavata-api/src/main/java/org/apache/airavata/sharing/mappers/SharingMapper.java
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/UserGroupRepository.java
=> mappers/UserGroupMapper.java} (57%)
copy
airavata-api/src/main/java/org/apache/airavata/sharing/{repositories/UserRepository.java
=> mappers/UserMapper.java} (58%)
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/sharing/repositories/AbstractRepository.java
delete mode 100644
airavata-api/src/main/java/org/apache/airavata/sharing/utils/JPAUtils.java
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airavata-api/src/test/java/org/apache/airavata/config/BackgroundServicesStartupTest.java
create mode 100644
airavata-api/src/test/java/org/apache/airavata/config/MinimalStartupTest.java
create mode 100644
airavata-api/src/test/java/org/apache/airavata/config/RestModeStartupTest.java
create mode 100644
airavata-api/src/test/java/org/apache/airavata/config/ThriftModeStartupTest.java
create mode 100644
airavata-api/src/test/java/org/apache/airavata/config/UnifiedApplicationStartupTest.java
delete mode 100644
airavata-api/src/test/java/org/apache/airavata/registry/utils/CustomBeanFactoryTest.java
create mode 100644
airavata-api/src/test/resources/META-INF/services/org.apache.airavata.accountprovisioning.SSHAccountProvisionerProvider
create mode 100644 airavata-api/src/test/resources/application.properties
create mode 100644
modules/distribution/src/main/java/org/apache/airavata/server/bootstrap/MappingToolRunner.java
rename
{airavata-api/src/main/java/org/apache/airavata/registry/utils/migration =>
modules/distribution/src/main/java/org/apache/airavata/server/bootstrap}/MigrationSchemaGenerator.java
(91%)
delete mode 100644
modules/thrift-api/src/main/java/org/apache/airavata/thriftapi/util/ThriftClientPool.java
delete mode 100644
modules/thrift-api/src/test/java/org/apache/airavata/thriftapi/util/ThriftClientPoolTest.java
