thedustinmiller opened a new issue, #41512:
URL: https://github.com/apache/airflow/issues/41512

   ### Apache Airflow version
   
   2.9.3
   
   ### If "Other Airflow 2 version" selected, which one?
   
   _No response_
   
   ### What happened?
   
   When starting an Airflow instance or checking a property via `airflow config 
list/get-value` properties that have the `_secret` suffix return their literal 
value and the main property isn't set at all. The default values instead are 
applied.
   
   ### What you think should happen instead?
   
   According to the docs, the following snippet should retrieve the key 
`sql_alchemy_conn` from the secret backend (the local filesystem one, in my 
case) and assign it to the `sql_alchemy_conn` under the `[database]` section.  
   ```
   [database]
   sql_alchemy_conn_secret = sql_alchemy_conn
   ```
   https://airflow.apache.org/docs/apache-airflow/stable/howto/set-config.html
   
   ### How to reproduce
   
   Reproducing requires only configuring the following properties in 
airflow.cfg and the .env file in the same directory. The secret backend still 
works from within a DAG, however, it just seems to not be invoked while parsing 
the airflow.cfg. I tried bringing the [secrets] section to the top of the 
airflow.cfg, since by default it comes after [database], but that had no effect.
   ```
   [secrets]
   backend = airflow.secrets.local_filesystem.LocalFilesystemBackend
   backend_kwargs = {"variables_file_path": "./.env"}
   
   [database]
   sql_alchemy_conn_secret = sql_alchemy_conn
   ```
   and an .env file (or yaml or json) like this
   ```
   sql_alchemy_conn=postgresql://airflow_user@localhost/airflow_db
   ```
   
   ### Operating System
   
   Arch linux 6.10.4-arch2-1
   
   ### Versions of Apache Airflow Providers
   
   apache-airflow-providers-celery==3.7.2
   apache-airflow-providers-common-io==1.3.2
   apache-airflow-providers-common-sql==1.14.2
   apache-airflow-providers-fab==1.2.2
   apache-airflow-providers-ftp==3.10.0
   apache-airflow-providers-http==4.12.0
   apache-airflow-providers-imap==3.6.1
   apache-airflow-providers-smtp==1.7.1
   apache-airflow-providers-sqlite==3.8.1
   
   ### Deployment
   
   Virtualenv installation
   
   ### Deployment details
   
   venv setup from python 3.12.4 
   `pip install "apache-airflow[celery]==2.9.3" --constraint 
"./constraints-3.8.txt"`
   
   ### Anything else?
   
   This is from a completely fresh installation. The issue also appears on an 
ARM Mac. I don't have the other possible secret backends set up, so I don't 
know how those behave. I can also understand that this might be a documentation 
issue and this isn't supported anymore, since the secrets backend would be 
retrieving secrets for the same file it is configured in itself.
   
   ### Are you willing to submit PR?
   
   - [ ] Yes I am willing to submit a PR!
   
   ### Code of Conduct
   
   - [X] I agree to follow this project's [Code of 
Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)
   


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