github-advanced-security[bot] commented on code in PR #816:
URL: 
https://github.com/apache/incubator-baremaps/pull/816#discussion_r1432687122


##########
baremaps-core/src/main/java/org/apache/baremaps/openstreetmap/function/CleanDuplicatePoints.java:
##########
@@ -0,0 +1,118 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap.function;
+
+import java.util.ArrayList;
+import java.util.List;
+import org.locationtech.jts.geom.*;
+
+public class CleanDuplicatePoints {
+
+  public static Coordinate[] removeDuplicatePoints(Coordinate[] coord) {
+    List uniqueCoords = new ArrayList();
+    Coordinate lastPt = null;
+    for (int i = 0; i < coord.length; i++) {
+      if (lastPt == null || !lastPt.equals(coord[i])) {
+        lastPt = coord[i];
+        uniqueCoords.add(new Coordinate(lastPt));
+      }
+    }
+    return (Coordinate[]) uniqueCoords.toArray(new Coordinate[0]);
+  }
+
+  private GeometryFactory fact;
+
+  public CleanDuplicatePoints() {}
+
+  public Geometry clean(Geometry g) {
+    fact = g.getFactory();
+    if (g.isEmpty()) {
+      return g;
+    }
+    if (g instanceof Point) {
+      return g;
+    } else if (g instanceof MultiPoint) {
+      return g;
+    }
+    // LineString also handles LinearRings
+    else if (g instanceof LinearRing) {
+      return clean((LinearRing) g);
+    } else if (g instanceof LineString) {
+      return clean((LineString) g);
+    } else if (g instanceof Polygon) {
+      return clean((Polygon) g);
+    } else if (g instanceof MultiLineString) {
+      return clean((MultiLineString) g);
+    } else if (g instanceof MultiPolygon) {
+      return clean((MultiPolygon) g);
+    } else if (g instanceof GeometryCollection) {
+      return clean((GeometryCollection) g);
+    } else {
+      throw new UnsupportedOperationException(g.getClass().getName());
+    }
+  }
+
+  private LinearRing clean(LinearRing g) {
+    Coordinate[] coords = removeDuplicatePoints(g.getCoordinates());
+    return fact.createLinearRing(coords);
+  }
+
+  private LineString clean(LineString g) {
+    Coordinate[] coords = removeDuplicatePoints(g.getCoordinates());
+    return fact.createLineString(coords);
+  }
+
+  private Polygon clean(Polygon poly) {
+    Coordinate[] shellCoords = 
removeDuplicatePoints(poly.getExteriorRing().getCoordinates());
+    LinearRing shell = fact.createLinearRing(shellCoords);
+    List holes = new ArrayList();
+    for (int i = 0; i < poly.getNumInteriorRing(); i++) {
+      Coordinate[] holeCoords = 
removeDuplicatePoints(poly.getInteriorRingN(i).getCoordinates());
+      holes.add(fact.createLinearRing(holeCoords));
+    }
+    return fact.createPolygon(shell, GeometryFactory.toLinearRingArray(holes));
+  }
+
+  private MultiPolygon clean(MultiPolygon g) {
+    List polys = new ArrayList();
+    for (int i = 0; i < g.getNumGeometries(); i++) {
+      Polygon poly = (Polygon) g.getGeometryN(i);
+      polys.add(clean(poly));
+    }
+    return fact.createMultiPolygon(GeometryFactory.toPolygonArray(polys));
+  }
+
+  private MultiLineString clean(MultiLineString g) {
+    List lines = new ArrayList();
+    for (int i = 0; i < g.getNumGeometries(); i++) {
+      LineString line = (LineString) g.getGeometryN(i);
+      lines.add(clean(line));
+    }
+    return 
fact.createMultiLineString(GeometryFactory.toLineStringArray(lines));
+  }
+
+  private GeometryCollection clean(GeometryCollection g) {

Review Comment:
   ## Confusing overloading of methods
   
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](1), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](2), since dispatch depends on static types.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/864)



##########
baremaps-core/src/main/java/org/apache/baremaps/openstreetmap/function/CleanDuplicatePoints.java:
##########
@@ -0,0 +1,118 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap.function;
+
+import java.util.ArrayList;
+import java.util.List;
+import org.locationtech.jts.geom.*;
+
+public class CleanDuplicatePoints {
+
+  public static Coordinate[] removeDuplicatePoints(Coordinate[] coord) {
+    List uniqueCoords = new ArrayList();
+    Coordinate lastPt = null;
+    for (int i = 0; i < coord.length; i++) {
+      if (lastPt == null || !lastPt.equals(coord[i])) {
+        lastPt = coord[i];
+        uniqueCoords.add(new Coordinate(lastPt));
+      }
+    }
+    return (Coordinate[]) uniqueCoords.toArray(new Coordinate[0]);
+  }
+
+  private GeometryFactory fact;
+
+  public CleanDuplicatePoints() {}
+
+  public Geometry clean(Geometry g) {
+    fact = g.getFactory();
+    if (g.isEmpty()) {
+      return g;
+    }
+    if (g instanceof Point) {
+      return g;
+    } else if (g instanceof MultiPoint) {
+      return g;
+    }
+    // LineString also handles LinearRings
+    else if (g instanceof LinearRing) {
+      return clean((LinearRing) g);
+    } else if (g instanceof LineString) {
+      return clean((LineString) g);
+    } else if (g instanceof Polygon) {
+      return clean((Polygon) g);
+    } else if (g instanceof MultiLineString) {
+      return clean((MultiLineString) g);
+    } else if (g instanceof MultiPolygon) {
+      return clean((MultiPolygon) g);
+    } else if (g instanceof GeometryCollection) {
+      return clean((GeometryCollection) g);
+    } else {
+      throw new UnsupportedOperationException(g.getClass().getName());
+    }
+  }
+
+  private LinearRing clean(LinearRing g) {
+    Coordinate[] coords = removeDuplicatePoints(g.getCoordinates());
+    return fact.createLinearRing(coords);
+  }
+
+  private LineString clean(LineString g) {

Review Comment:
   ## Confusing overloading of methods
   
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](1), since dispatch depends on static types.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/865)



##########
baremaps-core/src/main/java/org/apache/baremaps/openstreetmap/function/CleanDuplicatePoints.java:
##########
@@ -0,0 +1,118 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap.function;
+
+import java.util.ArrayList;
+import java.util.List;
+import org.locationtech.jts.geom.*;
+
+public class CleanDuplicatePoints {
+
+  public static Coordinate[] removeDuplicatePoints(Coordinate[] coord) {
+    List uniqueCoords = new ArrayList();
+    Coordinate lastPt = null;
+    for (int i = 0; i < coord.length; i++) {
+      if (lastPt == null || !lastPt.equals(coord[i])) {
+        lastPt = coord[i];
+        uniqueCoords.add(new Coordinate(lastPt));
+      }
+    }
+    return (Coordinate[]) uniqueCoords.toArray(new Coordinate[0]);
+  }
+
+  private GeometryFactory fact;
+
+  public CleanDuplicatePoints() {}
+
+  public Geometry clean(Geometry g) {

Review Comment:
   ## Confusing overloading of methods
   
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](1), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](2), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](3), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](4), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](5), since dispatch depends on static types.
   Method CleanDuplicatePoints.clean(..) could be confused with overloaded 
method [clean](6), since dispatch depends on static types.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/863)



##########
baremaps-core/src/test/java/org/apache/baremaps/openstreetmap/OsmTestRunner.java:
##########
@@ -0,0 +1,243 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap;
+
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.stream.Stream;
+import org.apache.baremaps.openstreetmap.model.Element;
+import org.apache.baremaps.openstreetmap.store.MockDataMap;
+import org.apache.baremaps.openstreetmap.xml.XmlEntityReader;
+import org.apache.baremaps.testing.TestFiles;
+import org.jetbrains.annotations.NotNull;
+import org.junit.jupiter.api.DynamicTest;
+import org.junit.jupiter.api.TestFactory;
+import org.locationtech.jts.geom.Geometry;
+import org.locationtech.jts.geom.LineString;
+import org.locationtech.jts.geom.MultiPolygon;
+import org.locationtech.jts.io.WKTReader;
+import 
org.testcontainers.shaded.com.fasterxml.jackson.databind.DeserializationFeature;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.JsonNode;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.ObjectMapper;
+
+
+public class OsmTestRunner {
+
+  @TestFactory
+  public Stream<DynamicTest> runTestsFromFiles() throws IOException {
+    var directory = TestFiles.resolve("osm-testdata");
+    try (var files = Files.walk(directory)) {
+      return files.filter(f -> f.endsWith("test.json"))
+          .map(OsmTest::new)
+          .filter(OsmTest::isValid)
+          .sorted()
+          .map(this::createDynamicTest)
+          .toList().stream();
+    }
+  }
+
+  @NotNull
+  private DynamicTest createDynamicTest(OsmTest testFile) {
+    var displayName = String.format("%s: %s", testFile.getId(), 
testFile.getDescription());
+    return DynamicTest.dynamicTest(displayName, () -> runTest(testFile));
+  }
+
+  public void runTest(OsmTest osmTest) {
+    try {
+      var elements = new XmlEntityReader()
+          .coordinateMap(new MockDataMap<>())
+          .referenceMap(new MockDataMap<>())
+          .geometries(true)
+          .stream(Files.newInputStream(osmTest.getOsmXml()))
+          .filter(e -> e instanceof Element)
+          .map(e -> (Element) e)
+          .toList();
+
+      for (var element : elements) {
+        // Each element should have a geometry
+        var id = element.getId();
+        var fileGeometry = element.getGeometry();
+        assertNotNull(fileGeometry);
+
+        // Prepare the test geometry
+        var testWkt = osmTest.getWkts().get(id);
+        Geometry testGeometry = null;
+        try {
+          testGeometry = new WKTReader().read(testWkt);
+        } catch (Exception e) {
+          // ignore
+        }
+        if (testGeometry instanceof LineString lineString
+            && lineString.isClosed()) {
+          testGeometry =
+              
testGeometry.getFactory().createPolygon(lineString.getCoordinateSequence());
+        }
+        if (testGeometry instanceof MultiPolygon multiPolygon
+            && multiPolygon.getNumGeometries() == 1) {
+          testGeometry = multiPolygon.getGeometryN(0);
+        }
+
+        // The test geometry and the file geometry should be equal
+        assertTrue(String.format("The geometries are not 
equal\nExpected:\n%s\nActual:\n%s",
+            testGeometry, fileGeometry), 
testGeometry.norm().equalsExact(fileGeometry.norm()));
+      }
+    } catch (IOException e) {
+      throw new RuntimeException(e);
+    }
+  }
+
+  private class OsmTest implements Comparable<OsmTest> {
+
+    private static final ObjectMapper objectMapper =
+        new 
ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, 
false);
+
+    private final Path jsonFile;
+
+    private final JsonNode testJson;
+
+    public OsmTest(Path jsonFile) {
+      this.jsonFile = jsonFile;
+      try {
+        this.testJson = objectMapper.readValue(jsonFile.toFile(), 
JsonNode.class);
+      } catch (IOException e) {
+        throw new RuntimeException(e);
+      }
+    }
+
+    public Long getId() {
+      return testJson.get("test_id").asLong();
+    }
+
+    public String getDescription() {
+      return testJson.get("description").asText();
+    }
+
+    public Path getJsonFile() {
+      return jsonFile;
+    }
+
+    public Path getDirectory() {
+      return jsonFile.getParent();
+    }
+
+    public boolean isValid() {
+      try {
+        return 
Files.readString(getDirectory().resolve("result")).trim().equals("valid");
+      } catch (IOException e) {
+        throw new RuntimeException(e);
+      }
+    }
+
+    public JsonNode getTestJson() {
+      return testJson;
+    }
+
+    public Map<Long, String> getWkts() {
+      var wkts = new HashMap<Long, String>();
+      wkts.putAll(getNodes());
+      wkts.putAll(getWays());
+      wkts.putAll(getRelations());
+      wkts.putAll(getAreas());
+      return wkts;
+    }
+
+    public Map<Long, String> getNodes() {
+      var wkts = new HashMap<Long, String>();
+      extractWktFile("nodes.wkt", wkts);
+      return wkts;
+    }
+
+    public Map<Long, String> getWays() {
+      var wkts = new HashMap<Long, String>();
+      extractWktFile("ways.wkt", wkts);
+      return wkts;
+    }
+
+    public Map<Long, String> getRelations() {
+      var wkts = new HashMap<Long, String>();
+      extractWktFile("relations.wkt", wkts);
+      return wkts;
+    }
+
+    public Map<Long, String> getAreas() {
+      var wkts = new HashMap<Long, String>();
+      if (testJson.has("areas")) {
+        var areas = testJson.get("areas");
+        extractAreas(areas, "default", wkts);
+        extractAreas(areas, "location", wkts);
+        extractAreas(areas, "fixed", wkts);
+        extractAreas(areas, "fix", wkts);
+      }
+      return wkts;
+    }
+
+    private void extractAreas(JsonNode areas, String name, Map<Long, String> 
wkts) {
+      if (areas.has(name)) {
+        var defaultAreas = areas.get(name);
+        if (defaultAreas.isArray()) {
+          for (var area : defaultAreas) {
+            if (area.has("wkt")) {
+              var wkt = area.get("wkt").asText();
+              var id = area.get("from_id").asLong();
+              wkts.put(id, wkt);
+            }
+          }
+        }
+      }
+    }
+
+    private void extractWktFile(String wktFile, Map<Long, String> wkts) {
+      parseWkt(getDirectory().resolve(wktFile), wkts);
+    }
+
+    private void parseWkt(Path path, Map<Long, String> geometries) {
+      if (!Files.exists(path)) {
+        return;
+      }
+      try {
+        Files.lines(path).forEach(line -> {
+          var needle = line.indexOf(' ');
+          var id = Long.parseLong(line.substring(0, needle).strip());

Review Comment:
   ## Missing catch of NumberFormatException
   
   Potential uncaught 'java.lang.NumberFormatException'.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/866)



##########
baremaps-core/src/test/java/org/apache/baremaps/openstreetmap/OsmTestRunner.java:
##########
@@ -0,0 +1,243 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap;
+
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.stream.Stream;
+import org.apache.baremaps.openstreetmap.model.Element;
+import org.apache.baremaps.openstreetmap.store.MockDataMap;
+import org.apache.baremaps.openstreetmap.xml.XmlEntityReader;
+import org.apache.baremaps.testing.TestFiles;
+import org.jetbrains.annotations.NotNull;
+import org.junit.jupiter.api.DynamicTest;
+import org.junit.jupiter.api.TestFactory;
+import org.locationtech.jts.geom.Geometry;
+import org.locationtech.jts.geom.LineString;
+import org.locationtech.jts.geom.MultiPolygon;
+import org.locationtech.jts.io.WKTReader;
+import 
org.testcontainers.shaded.com.fasterxml.jackson.databind.DeserializationFeature;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.JsonNode;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.ObjectMapper;
+
+
+public class OsmTestRunner {
+
+  @TestFactory
+  public Stream<DynamicTest> runTestsFromFiles() throws IOException {
+    var directory = TestFiles.resolve("osm-testdata");
+    try (var files = Files.walk(directory)) {
+      return files.filter(f -> f.endsWith("test.json"))
+          .map(OsmTest::new)
+          .filter(OsmTest::isValid)
+          .sorted()
+          .map(this::createDynamicTest)
+          .toList().stream();
+    }
+  }
+
+  @NotNull
+  private DynamicTest createDynamicTest(OsmTest testFile) {
+    var displayName = String.format("%s: %s", testFile.getId(), 
testFile.getDescription());
+    return DynamicTest.dynamicTest(displayName, () -> runTest(testFile));
+  }
+
+  public void runTest(OsmTest osmTest) {
+    try {
+      var elements = new XmlEntityReader()
+          .coordinateMap(new MockDataMap<>())
+          .referenceMap(new MockDataMap<>())
+          .geometries(true)
+          .stream(Files.newInputStream(osmTest.getOsmXml()))
+          .filter(e -> e instanceof Element)
+          .map(e -> (Element) e)
+          .toList();
+
+      for (var element : elements) {
+        // Each element should have a geometry
+        var id = element.getId();
+        var fileGeometry = element.getGeometry();
+        assertNotNull(fileGeometry);
+
+        // Prepare the test geometry
+        var testWkt = osmTest.getWkts().get(id);
+        Geometry testGeometry = null;
+        try {
+          testGeometry = new WKTReader().read(testWkt);
+        } catch (Exception e) {
+          // ignore
+        }
+        if (testGeometry instanceof LineString lineString
+            && lineString.isClosed()) {
+          testGeometry =
+              
testGeometry.getFactory().createPolygon(lineString.getCoordinateSequence());
+        }
+        if (testGeometry instanceof MultiPolygon multiPolygon
+            && multiPolygon.getNumGeometries() == 1) {
+          testGeometry = multiPolygon.getGeometryN(0);
+        }
+
+        // The test geometry and the file geometry should be equal
+        assertTrue(String.format("The geometries are not 
equal\nExpected:\n%s\nActual:\n%s",
+            testGeometry, fileGeometry), 
testGeometry.norm().equalsExact(fileGeometry.norm()));
+      }
+    } catch (IOException e) {
+      throw new RuntimeException(e);
+    }
+  }
+
+  private class OsmTest implements Comparable<OsmTest> {

Review Comment:
   ## Inconsistent compareTo
   
   This class declares [compareTo](1) but inherits equals; the two could be 
inconsistent.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/870)



##########
baremaps-core/src/main/java/org/apache/baremaps/openstreetmap/function/CleanDuplicatePoints.java:
##########
@@ -0,0 +1,118 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap.function;
+
+import java.util.ArrayList;
+import java.util.List;
+import org.locationtech.jts.geom.*;
+
+public class CleanDuplicatePoints {
+
+  public static Coordinate[] removeDuplicatePoints(Coordinate[] coord) {
+    List uniqueCoords = new ArrayList();
+    Coordinate lastPt = null;
+    for (int i = 0; i < coord.length; i++) {
+      if (lastPt == null || !lastPt.equals(coord[i])) {
+        lastPt = coord[i];
+        uniqueCoords.add(new Coordinate(lastPt));
+      }
+    }
+    return (Coordinate[]) uniqueCoords.toArray(new Coordinate[0]);
+  }
+
+  private GeometryFactory fact;
+
+  public CleanDuplicatePoints() {}
+
+  public Geometry clean(Geometry g) {
+    fact = g.getFactory();
+    if (g.isEmpty()) {
+      return g;
+    }
+    if (g instanceof Point) {

Review Comment:
   ## Chain of 'instanceof' tests
   
   This if block performs a chain of 8 type tests - consider alternatives, e.g. 
polymorphism or the visitor pattern.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/868)



##########
baremaps-core/src/test/java/org/apache/baremaps/openstreetmap/OsmTestRunner.java:
##########
@@ -0,0 +1,243 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap;
+
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.stream.Stream;
+import org.apache.baremaps.openstreetmap.model.Element;
+import org.apache.baremaps.openstreetmap.store.MockDataMap;
+import org.apache.baremaps.openstreetmap.xml.XmlEntityReader;
+import org.apache.baremaps.testing.TestFiles;
+import org.jetbrains.annotations.NotNull;
+import org.junit.jupiter.api.DynamicTest;
+import org.junit.jupiter.api.TestFactory;
+import org.locationtech.jts.geom.Geometry;
+import org.locationtech.jts.geom.LineString;
+import org.locationtech.jts.geom.MultiPolygon;
+import org.locationtech.jts.io.WKTReader;
+import 
org.testcontainers.shaded.com.fasterxml.jackson.databind.DeserializationFeature;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.JsonNode;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.ObjectMapper;
+
+
+public class OsmTestRunner {
+
+  @TestFactory
+  public Stream<DynamicTest> runTestsFromFiles() throws IOException {
+    var directory = TestFiles.resolve("osm-testdata");
+    try (var files = Files.walk(directory)) {
+      return files.filter(f -> f.endsWith("test.json"))
+          .map(OsmTest::new)
+          .filter(OsmTest::isValid)
+          .sorted()
+          .map(this::createDynamicTest)
+          .toList().stream();
+    }
+  }
+
+  @NotNull
+  private DynamicTest createDynamicTest(OsmTest testFile) {
+    var displayName = String.format("%s: %s", testFile.getId(), 
testFile.getDescription());
+    return DynamicTest.dynamicTest(displayName, () -> runTest(testFile));
+  }
+
+  public void runTest(OsmTest osmTest) {
+    try {
+      var elements = new XmlEntityReader()
+          .coordinateMap(new MockDataMap<>())
+          .referenceMap(new MockDataMap<>())
+          .geometries(true)
+          .stream(Files.newInputStream(osmTest.getOsmXml()))
+          .filter(e -> e instanceof Element)
+          .map(e -> (Element) e)
+          .toList();
+
+      for (var element : elements) {
+        // Each element should have a geometry
+        var id = element.getId();
+        var fileGeometry = element.getGeometry();
+        assertNotNull(fileGeometry);
+
+        // Prepare the test geometry
+        var testWkt = osmTest.getWkts().get(id);
+        Geometry testGeometry = null;
+        try {
+          testGeometry = new WKTReader().read(testWkt);
+        } catch (Exception e) {
+          // ignore
+        }
+        if (testGeometry instanceof LineString lineString
+            && lineString.isClosed()) {
+          testGeometry =
+              
testGeometry.getFactory().createPolygon(lineString.getCoordinateSequence());
+        }
+        if (testGeometry instanceof MultiPolygon multiPolygon
+            && multiPolygon.getNumGeometries() == 1) {
+          testGeometry = multiPolygon.getGeometryN(0);
+        }
+
+        // The test geometry and the file geometry should be equal
+        assertTrue(String.format("The geometries are not 
equal\nExpected:\n%s\nActual:\n%s",
+            testGeometry, fileGeometry), 
testGeometry.norm().equalsExact(fileGeometry.norm()));

Review Comment:
   ## Dereferenced variable may be null
   
   Variable [testGeometry](1) may be null at this access because of [this](2) 
assignment.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/869)



##########
baremaps-core/src/test/java/org/apache/baremaps/openstreetmap/OsmTestRunner.java:
##########
@@ -0,0 +1,243 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to you under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.baremaps.openstreetmap;
+
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.stream.Stream;
+import org.apache.baremaps.openstreetmap.model.Element;
+import org.apache.baremaps.openstreetmap.store.MockDataMap;
+import org.apache.baremaps.openstreetmap.xml.XmlEntityReader;
+import org.apache.baremaps.testing.TestFiles;
+import org.jetbrains.annotations.NotNull;
+import org.junit.jupiter.api.DynamicTest;
+import org.junit.jupiter.api.TestFactory;
+import org.locationtech.jts.geom.Geometry;
+import org.locationtech.jts.geom.LineString;
+import org.locationtech.jts.geom.MultiPolygon;
+import org.locationtech.jts.io.WKTReader;
+import 
org.testcontainers.shaded.com.fasterxml.jackson.databind.DeserializationFeature;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.JsonNode;
+import org.testcontainers.shaded.com.fasterxml.jackson.databind.ObjectMapper;
+
+
+public class OsmTestRunner {
+
+  @TestFactory
+  public Stream<DynamicTest> runTestsFromFiles() throws IOException {
+    var directory = TestFiles.resolve("osm-testdata");
+    try (var files = Files.walk(directory)) {
+      return files.filter(f -> f.endsWith("test.json"))
+          .map(OsmTest::new)
+          .filter(OsmTest::isValid)
+          .sorted()
+          .map(this::createDynamicTest)
+          .toList().stream();
+    }
+  }
+
+  @NotNull
+  private DynamicTest createDynamicTest(OsmTest testFile) {
+    var displayName = String.format("%s: %s", testFile.getId(), 
testFile.getDescription());
+    return DynamicTest.dynamicTest(displayName, () -> runTest(testFile));
+  }
+
+  public void runTest(OsmTest osmTest) {
+    try {
+      var elements = new XmlEntityReader()
+          .coordinateMap(new MockDataMap<>())
+          .referenceMap(new MockDataMap<>())
+          .geometries(true)
+          .stream(Files.newInputStream(osmTest.getOsmXml()))
+          .filter(e -> e instanceof Element)
+          .map(e -> (Element) e)
+          .toList();
+
+      for (var element : elements) {
+        // Each element should have a geometry
+        var id = element.getId();
+        var fileGeometry = element.getGeometry();
+        assertNotNull(fileGeometry);
+
+        // Prepare the test geometry
+        var testWkt = osmTest.getWkts().get(id);
+        Geometry testGeometry = null;
+        try {
+          testGeometry = new WKTReader().read(testWkt);
+        } catch (Exception e) {
+          // ignore
+        }
+        if (testGeometry instanceof LineString lineString
+            && lineString.isClosed()) {
+          testGeometry =
+              
testGeometry.getFactory().createPolygon(lineString.getCoordinateSequence());
+        }
+        if (testGeometry instanceof MultiPolygon multiPolygon
+            && multiPolygon.getNumGeometries() == 1) {
+          testGeometry = multiPolygon.getGeometryN(0);
+        }
+
+        // The test geometry and the file geometry should be equal
+        assertTrue(String.format("The geometries are not 
equal\nExpected:\n%s\nActual:\n%s",
+            testGeometry, fileGeometry), 
testGeometry.norm().equalsExact(fileGeometry.norm()));
+      }
+    } catch (IOException e) {
+      throw new RuntimeException(e);
+    }
+  }
+
+  private class OsmTest implements Comparable<OsmTest> {

Review Comment:
   ## Inner class could be static
   
   OsmTest should be made static, since the enclosing instance is not used.
   
   [Show more 
details](https://github.com/apache/incubator-baremaps/security/code-scanning/867)



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