GitHub user mhsaul opened a pull request:
https://github.com/apache/beam/pull/4157
[BEAM-2774] Added loose failure mode to allow individual VCF record reads
to fail
Added configuration parameter `allow_malformed_records` that allows reads
for records to be logged and returned as `MalformedVcfRecord` objects so that
the pipeline can continue if some records are malformed.
@chamikaramj, @jkff can you please take a look?
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/mhsaul/beam vcf-record-loose-mode
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/beam/pull/4157.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #4157
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commit b46a3e7e83af5e45d1dd520f22db5bb155f760b3
Author: Miles Saul <[email protected]>
Date: 2017-11-21T19:30:16Z
Added loose failure mode to allow individual VCF record reads to fail
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