See <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/436/display/redirect?page=changes>
Changes: [lcwik] [BEAM-4653] Add support to the Java SDK harness to execute timers. [amaliujia] BEAM-4820: Add timeout to Future.get when waiting for Pubsub messages [lcwik] Address PR comments. [lcwik] Address PR comments. [jxlewis] Added ClientConfiguration to AwsOptions and S3FileSystem ------------------------------------------ Started by timer [EnvInject] - Loading node environment variables. Building remotely on beam7 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/> > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/apache/beam.git # timeout=10 Fetching upstream changes from https://github.com/apache/beam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/apache/beam.git > +refs/heads/*:refs/remotes/origin/* > +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/* > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision 0e18bf4c81e09c193e113c74cac7301dc26dac9e (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 0e18bf4c81e09c193e113c74cac7301dc26dac9e Commit message: "Merge pull request #5985 from amaliujia/rui_wang-fix_pubsubIT" > git rev-list --no-walk e33852830d863cfa9f9b3250e81afe29b8321d4b # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [EnvInject] - Executing scripts and injecting environment variables after the SCM step. [EnvInject] - Injecting as environment variables the properties content SPARK_LOCAL_IP=127.0.0.1 [EnvInject] - Variables injected successfully. [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins8920992676523719316.sh + gcloud container clusters get-credentials io-datastores --zone=us-central1-a --verbosity=debug DEBUG: Running [gcloud.container.clusters.get-credentials] with arguments: [--verbosity: "debug", --zone: "us-central1-a", NAME: "io-datastores"] Fetching cluster endpoint and auth data. DEBUG: Saved kubeconfig to /home/jenkins/.kube/config kubeconfig entry generated for io-datastores. INFO: Display format "default". DEBUG: SDK update checks are disabled. [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins6097053804917533185.sh + cp /home/jenkins/.kube/config <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/config-beam-performancetests-compressed-textioit-hdfs-436> [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins7401532941956433510.sh + kubectl --kubeconfig=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/config-beam-performancetests-compressed-textioit-hdfs-436> create namespace beam-performancetests-compressed-textioit-hdfs-436 namespace "beam-performancetests-compressed-textioit-hdfs-436" created [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins2386062541118122279.sh ++ kubectl config current-context + kubectl --kubeconfig=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/config-beam-performancetests-compressed-textioit-hdfs-436> config set-context gke_apache-beam-testing_us-central1-a_io-datastores --namespace=beam-performancetests-compressed-textioit-hdfs-436 Context "gke_apache-beam-testing_us-central1-a_io-datastores" modified. [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins7990645803359857802.sh + rm -rf PerfKitBenchmarker [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins3986756723617480538.sh + rm -rf .env [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins5158069921187886812.sh + virtualenv .env --system-site-packages New python executable in <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/.env/bin/python2> Also creating executable in <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/.env/bin/python> Installing setuptools, pkg_resources, pip, wheel...done. Running virtualenv with interpreter /usr/bin/python2 [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins7663006266610262563.sh + .env/bin/pip install --upgrade setuptools pip Requirement already up-to-date: setuptools in ./.env/lib/python2.7/site-packages (40.0.0) Requirement already up-to-date: pip in ./.env/lib/python2.7/site-packages (10.0.1) [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins8316350458215125177.sh + git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git Cloning into 'PerfKitBenchmarker'... 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platform_python_implementation != "PyPy"->cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (2.18) Installing collected packages: absl-py, colorama, colorlog, blinker, futures, pint, numpy, contextlib2, ntlm-auth, requests-ntlm, xmltodict, pywinrm, timeout-decorator Successfully installed absl-py-0.2.2 blinker-1.4 colorama-0.3.9 colorlog-2.6.0 contextlib2-0.5.5 futures-3.2.0 ntlm-auth-1.2.0 numpy-1.13.3 pint-0.8.1 pywinrm-0.3.0 requests-ntlm-1.1.0 timeout-decorator-0.4.0 xmltodict-0.11.0 [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins3355883032862036226.sh + .env/bin/pip install -e 'src/sdks/python/[gcp,test]' Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src/sdks/python> Collecting avro<2.0.0,>=1.8.1 (from apache-beam==2.7.0.dev0) Requirement already satisfied: crcmod<2.0,>=1.7 in /usr/lib/python2.7/dist-packages (from apache-beam==2.7.0.dev0) (1.7) 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https://files.pythonhosted.org/packages/14/3a/096c7ad18e102d4f219f5dd15951f9728ca5092a3385d2e8f79a7c1e1017/fasteners-0.14.1-py2.py3-none-any.whl Collecting googleapis-common-protos<2.0dev,>=1.5.2 (from proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0->apache-beam==2.7.0.dev0) Collecting gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0 (from google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Collecting google-cloud-core<0.26dev,>=0.25.0 (from google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/ef/dd/00e90bd1f6788f06ca5ea83a0ec8dd76350b38303bb8f09d2bf692eb1294/google_cloud_core-0.25.0-py2.py3-none-any.whl Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python2.7/dist-packages (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.7.0.dev0) (2018.4.16) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python2.7/dist-packages (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.7.0.dev0) (3.0.4) Requirement already satisfied: idna<2.7,>=2.5 in /usr/local/lib/python2.7/dist-packages (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.7.0.dev0) (2.6) Requirement already satisfied: urllib3<1.23,>=1.21.1 in /usr/local/lib/python2.7/dist-packages (from requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.7.0.dev0) (1.22) Collecting monotonic>=0.1 (from fasteners>=0.14->google-apitools<=0.5.20,>=0.5.18->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/ac/aa/063eca6a416f397bd99552c534c6d11d57f58f2e94c14780f3bbf818c4cf/monotonic-1.5-py2.py3-none-any.whl Collecting google-gax<0.16dev,>=0.15.7 (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/4f/b4/ff312fa42f91535c67567c1d08e972db0e7c548e9a63c6f3bcc5213b32fc/google_gax-0.15.16-py2.py3-none-any.whl Collecting grpc-google-iam-v1<0.12dev,>=0.11.1 (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Collecting google-auth-httplib2 (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/33/49/c814d6d438b823441552198f096fcd0377fd6c88714dbed34f1d3c8c4389/google_auth_httplib2-0.0.3-py2.py3-none-any.whl Collecting google-auth<2.0.0dev,>=0.4.0 (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/53/06/6e6d5bfa4d23ee40efd772d6b681a7afecd859a9176e564b8c329382370f/google_auth-1.5.0-py2.py3-none-any.whl Collecting ply==3.8 (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Collecting cachetools>=2.0.0 (from google-auth<2.0.0dev,>=0.4.0->google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.7.0.dev0) Using cached https://files.pythonhosted.org/packages/0a/58/cbee863250b31d80f47401d04f34038db6766f95dea1cc909ea099c7e571/cachetools-2.1.0-py2.py3-none-any.whl gapic-google-cloud-pubsub-v1 0.15.4 has requirement oauth2client<4.0dev,>=2.0.0, but you'll have oauth2client 4.1.2 which is incompatible. proto-google-cloud-datastore-v1 0.90.4 has requirement oauth2client<4.0dev,>=2.0.0, but you'll have oauth2client 4.1.2 which is incompatible. proto-google-cloud-pubsub-v1 0.15.4 has requirement oauth2client<4.0dev,>=2.0.0, but you'll have oauth2client 4.1.2 which is incompatible. googledatastore 7.0.1 has requirement httplib2<0.10,>=0.9.1, but you'll have httplib2 0.11.3 which is incompatible. googledatastore 7.0.1 has requirement oauth2client<4.0.0,>=2.0.1, but you'll have oauth2client 4.1.2 which is incompatible. Installing collected packages: avro, dill, grpcio, hdfs, httplib2, funcsigs, mock, pyasn1-modules, rsa, oauth2client, protobuf, pyparsing, pydot, pytz, pyvcf, typing, future, fastavro, monotonic, fasteners, google-apitools, googleapis-common-protos, proto-google-cloud-datastore-v1, googledatastore, proto-google-cloud-pubsub-v1, ply, cachetools, google-auth, google-gax, grpc-google-iam-v1, gapic-google-cloud-pubsub-v1, google-auth-httplib2, google-cloud-core, google-cloud-pubsub, google-cloud-bigquery, nose, numpy, pyhamcrest, apache-beam Found existing installation: numpy 1.13.3 Uninstalling numpy-1.13.3: Successfully uninstalled numpy-1.13.3 Running setup.py develop for apache-beam Successfully installed apache-beam avro-1.8.2 cachetools-2.1.0 dill-0.2.8.2 fastavro-0.19.7 fasteners-0.14.1 funcsigs-1.0.2 future-0.16.0 gapic-google-cloud-pubsub-v1-0.15.4 google-apitools-0.5.20 google-auth-1.5.0 google-auth-httplib2-0.0.3 google-cloud-bigquery-0.25.0 google-cloud-core-0.25.0 google-cloud-pubsub-0.26.0 google-gax-0.15.16 googleapis-common-protos-1.5.3 googledatastore-7.0.1 grpc-google-iam-v1-0.11.4 grpcio-1.13.0 hdfs-2.1.0 httplib2-0.11.3 mock-2.0.0 monotonic-1.5 nose-1.3.7 numpy-1.14.5 oauth2client-4.1.2 ply-3.8 proto-google-cloud-datastore-v1-0.90.4 proto-google-cloud-pubsub-v1-0.15.4 protobuf-3.6.0 pyasn1-modules-0.2.2 pydot-1.2.4 pyhamcrest-1.9.0 pyparsing-2.2.0 pytz-2018.4 pyvcf-0.6.8 rsa-3.4.2 typing-3.6.4 [beam_PerformanceTests_Compressed_TextIOIT_HDFS] $ /bin/bash -xe /tmp/jenkins8337081802797073144.sh + .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --bigquery_table=beam_performance.compressed_textioit_hdfs_pkb_results --k8s_get_retry_count=36 --k8s_get_wait_interval=10 --temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/> --beam_location=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src> --official=true --kubeconfig=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/config-beam-performancetests-compressed-textioit-hdfs-436> --benchmarks=beam_integration_benchmark --beam_it_timeout=1200 --beam_prebuilt=false --beam_sdk=java --beam_it_module=sdks/java/io/file-based-io-tests --beam_it_class=org.apache.beam.sdk.io.text.TextIOIT '--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--compressionType=GZIP]' '--beam_extra_properties=[filesystem=hdfs]' --beam_options_config_file=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src/.test-infra/kubernetes/hadoop/LargeITCluster/pkb-config.yml> --beam_kubernetes_scripts=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src/.test-infra/kubernetes/hadoop/LargeITCluster/hdfs-multi-datanode-cluster.yml> 2018-07-20 00:20:52,949 26974c94 MainThread INFO Verbose logging to: <https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/runs/26974c94/pkb.log> 2018-07-20 00:20:52,949 26974c94 MainThread INFO PerfKitBenchmarker version: v1.12.0-725-g3cd3e81 2018-07-20 00:20:52,950 26974c94 MainThread INFO Flag values: --beam_it_class=org.apache.beam.sdk.io.text.TextIOIT --beam_it_timeout=1200 --beam_it_module=sdks/java/io/file-based-io-tests --beam_sdk=java --k8s_get_wait_interval=10 --temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/> --beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--compressionType=GZIP] --nobeam_prebuilt --kubeconfig=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/config-beam-performancetests-compressed-textioit-hdfs-436> --beam_extra_properties=[filesystem=hdfs] --project=apache-beam-testing --beam_kubernetes_scripts=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src/.test-infra/kubernetes/hadoop/LargeITCluster/hdfs-multi-datanode-cluster.yml> --bigquery_table=beam_performance.compressed_textioit_hdfs_pkb_results --official --dpb_log_level=INFO --beam_options_config_file=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src/.test-infra/kubernetes/hadoop/LargeITCluster/pkb-config.yml> --beam_location=<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/src> --k8s_get_retry_count=36 --benchmarks=beam_integration_benchmark Traceback (most recent call last): File "PerfKitBenchmarker/pkb.py", line 21, in <module> sys.exit(Main()) File "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 999, in Main SetUpPKB() File "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 861, in SetUpPKB requirements.CheckBasicRequirements() File "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/perfkitbenchmarker/requirements.py";,> line 74, in CheckBasicRequirements _CheckRequirements(requirements_file_path) File "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/perfkitbenchmarker/requirements.py";,> line 60, in _CheckRequirements linesep=os.linesep, msg=err_msg, path=requirements_file_path)) perfkitbenchmarker.errors.PythonPackageRequirementUnfulfilled: A Python package requirement was not met while checking "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/requirements.txt";>: numpy 1.14.5 is installed but numpy==1.13.3 is required To install required packages, execute the following command: pip install -r "<https://builds.apache.org/job/beam_PerformanceTests_Compressed_TextIOIT_HDFS/ws/PerfKitBenchmarker/requirements.txt";> To bypass package requirement checks, run PerfKit Benchmarker with the --ignore_package_requirements flag. Build step 'Execute shell' marked build as failure
