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https://issues.apache.org/jira/browse/CASSANDRA-5116?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13544652#comment-13544652
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Michael Kjellman commented on CASSANDRA-5116:
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caches and the system cache had no effect on this so not sure if the cleanup 
was the reason more hf files were compacted during the upgrade. I did notice 
that after i restarted the node, caches etc there were 4 out of 20-30+ pending 
sstables that did get upgraded. so it's not like certain sstables refuse to get 
upgraded.
                
> upgradesstables does not upgrade all sstables on a node
> -------------------------------------------------------
>
>                 Key: CASSANDRA-5116
>                 URL: https://issues.apache.org/jira/browse/CASSANDRA-5116
>             Project: Cassandra
>          Issue Type: Bug
>    Affects Versions: 1.2.0
>         Environment: Ubuntu 12.04
>            Reporter: Michael Kjellman
>            Assignee: Yuki Morishita
>
> upgradesstables appears to be skipping sstables randomly.
> finding a sstable with an mtime < the upgrade time and grepping through the 
> logs for a corresponding compaction log line, i find nothing. I have 
> reproduced this on all of my nodes across the cluster.
> is performAllSSTableOperation somehow skipping sstables?

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