This is an automated email from the ASF dual-hosted git repository.
SemyonSinchenko pushed a commit to branch main
in repository https://gitbox.apache.org/repos/asf/incubator-graphar.git
The following commit(s) were added to refs/heads/main by this push:
new 0e2bb53a chore: refactor pyproject (#936)
0e2bb53a is described below
commit 0e2bb53a7d273f70dfbac7e4a915911ceb27748d
Author: Sem <[email protected]>
AuthorDate: Tue Aug 25 09:54:38 2026 +0200
chore: refactor pyproject (#936)
* chore: refactor pyproject
* fix: regenerate lock
* fix: pytest
* feat: exclude pyarrow
* fix: remove duplicated row
* fix: fix deps for now
* fix: apt syntax
* fix: fix version and orc support
* fix: fix ubuntu branch
* fix: fix macos
* chore: dynamic version and fix warnings
* chore: bump cache version to the latest
* chore: update publish workflow
* chore: sync publish with dev ci
---------
Co-authored-by: SemyonSinchenko <[email protected]>
---
.github/workflows/python-wheel-workflow.yml | 183 +++++++---
.github/workflows/python.yml | 166 +++++++--
python/CMakeLists.txt | 26 +-
python/poetry.lock | 541 ++++++++++++++--------------
python/pyproject.toml | 60 ++-
python/src/graphar/__init__.py | 58 ++-
python/src/graphar/importer/config.py | 69 ++--
7 files changed, 672 insertions(+), 431 deletions(-)
diff --git a/.github/workflows/python-wheel-workflow.yml
b/.github/workflows/python-wheel-workflow.yml
index ad44f9c5..4fd47391 100644
--- a/.github/workflows/python-wheel-workflow.yml
+++ b/.github/workflows/python-wheel-workflow.yml
@@ -1,4 +1,3 @@
-
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
@@ -32,7 +31,6 @@ on:
- 'cpp/**'
- 'python/**'
- '.github/workflows/python-wheel-workflow.yml'
- - '.github/scripts/update_version.py'
pull_request:
branches:
- "main"
@@ -40,7 +38,6 @@ on:
- 'cpp/**'
- 'python/**'
- '.github/workflows/python-wheel-workflow.yml'
- - '.github/scripts/update_version.py'
workflow_dispatch:
inputs:
publish_pypi:
@@ -52,23 +49,24 @@ on:
jobs:
build_sdist:
name: Build source distribution
- runs-on: ubuntu-22.04
+ runs-on: ubuntu-24.04
steps:
- - uses: actions/checkout@v4
+ # fetch-depth 0 is required: since version
+ # is derived from git history
+ - uses: actions/checkout@v7
+ with:
+ fetch-depth: 0
- name: Set up Python
- uses: actions/setup-python@v5
+ uses: actions/setup-python@v6
with:
- python-version: "3.9"
+ python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install build twine
- - name: update pyproject version
- if: github.event_name != 'workflow_dispatch' ||
github.event.inputs.publish_pypi != 'true'
- run: |
- python .github/scripts/update_version.py
+
- name: Build sdist
run: |
# Bundle C++ sources into python/ so the sdist contains them.
@@ -76,6 +74,7 @@ jobs:
cp -a cpp python/_bundled_cpp
cd python
python -m build --sdist
+
- name: Store artifacts
uses: actions/upload-artifact@v4
with:
@@ -91,25 +90,34 @@ jobs:
include:
# Job 1: Native x86_64 build
- platform: x86_64
- runner: ubuntu-latest # This is the standard x86_64 runner
+ runner: ubuntu-24.04 # This is the standard x86_64 runner
os: linux
manylinux: _2_28
# Job 2: Native aarch64 build
- platform: aarch64
- runner: ubuntu-22.04-arm # This is a native ARM64 runner
+ runner: ubuntu-24.04-arm # This is a native ARM64 runner
os: linux
manylinux: _2_28
# Job 3: macOS arm64 build
+ # Pinned, not macos-latest: the runner OS sets the effective macOS
+ # deployment target (see CIBW_ENVIRONMENT_MACOS), so a mutable label
+ # could silently change the minimum macOS of the produced wheels.
- platform: arm64
- runner: macos-latest
+ runner: macos-15
os: macos
-
env:
+ # Must match the pyarrow pinned in python/pyproject.toml (pyarrow ==
24.0.0).
+ # Single source of truth for the Arrow version: it is used by the macOS
+ # steps (build from source) and by the Linux dnf pins below.
+ ARROW_VERSION: "24.0.0"
CIBW_PLATFORM: ${{ matrix.os }}
- CIBW_BUILD: "cp39-* cp310-* cp311-* cp312-* cp313-*"
+ # Keep in sync with requires-python (>= 3.10) and the classifiers in
+ # python/pyproject.toml. pyarrow ~= 24.0 (the runtime Arrow provider) has
+ # wheels for cp310-cp314 on every platform we build.
+ CIBW_BUILD: "cp310-* cp311-* cp312-* cp313-* cp314-*"
CIBW_SKIP: "*-musllinux_*"
# Use uv on macOS to avoid transient GitHub rate limits when cibuildwheel
CIBW_BUILD_FRONTEND: ${{ matrix.os == 'macos' && 'build[uv]' || 'build'
}}
@@ -117,7 +125,6 @@ jobs:
CIBW_ARCHS: ${{ matrix.platform }}
CIBW_MANYLINUX_X86_64_IMAGE: ${{ matrix.os == 'linux' &&
format('manylinux{0}', matrix.manylinux) || '' }}
CIBW_MANYLINUX_AARCH64_IMAGE: ${{ matrix.os == 'linux' &&
format('manylinux{0}', matrix.manylinux) || '' }}
- CIBW_ENVIRONMENT_WINDOWS: DISTUTILS_USE_SDK=1 MSSdk=1
CIBW_ENVIRONMENT_MACOS: ${{ matrix.os == 'macos' &&
'MACOSX_DEPLOYMENT_TARGET=$(sw_vers -productVersion)
CMAKE_OSX_DEPLOYMENT_TARGET=$(sw_vers -productVersion)
CFLAGS=-mmacosx-version-min=$(sw_vers -productVersion)
CXXFLAGS=-mmacosx-version-min=$(sw_vers -productVersion)
LDFLAGS=-mmacosx-version-min=$(sw_vers -productVersion)' || '' }}
CIBW_BEFORE_BUILD_LINUX: |
set -eux
@@ -137,59 +144,116 @@ jobs:
dnf config-manager --set-enabled ol$(cut -d: -f5
/etc/system-release-cpe | cut -d. -f1)_codeready_builder || :
dnf config-manager --set-enabled codeready-builder-for-rhel-$(cut -d:
-f5 /etc/system-release-cpe | cut -d. -f1)-rhui-rpms || :
subscription-manager repos --enable codeready-builder-for-rhel-$(cut
-d: -f5 /etc/system-release-cpe | cut -d. -f1)-$(arch)-rpms || :
- dnf install -y arrow-devel # For C++
- dnf install -y arrow-glib-devel # For GLib (C)
- dnf install -y arrow-dataset-devel # For Apache Arrow Dataset C++
- dnf install -y arrow-dataset-glib-devel # For Apache Arrow Dataset
GLib (C)
- dnf install -y arrow-acero-devel # For Apache Arrow Acero C++
- dnf install -y arrow-flight-devel # For Apache Arrow Flight C++
- dnf install -y arrow-flight-glib-devel # For Apache Arrow Flight GLib
(C)
- dnf install -y arrow-flight-sql-devel # For Apache Arrow Flight SQL C++
- dnf install -y arrow-flight-sql-glib-devel # For Apache Arrow Flight
SQL GLib (C)
- dnf install -y gandiva-devel # For Apache Gandiva C++
- dnf install -y gandiva-glib-devel # For Apache Gandiva GLib (C)
- dnf install -y parquet-devel # For Apache Parquet C++
- dnf install -y parquet-glib-devel # For Apache Parquet GLib (C)
+ # Pin the exact Arrow version: the wheel must be built against the same
+ # 24.0.0 that pyarrow == 24.0.0 ships (and that ARROW_VERSION above
+ # pins for macOS), because Arrow is resolved at runtime from the
+ # sibling pyarrow package instead of being bundled (see
+ # CIBW_REPAIR_WHEEL_COMMAND_* below). Installing the unpinned "latest"
+ # (e.g. 25.x) would produce libs whose SONAME does not exist in
+ # pyarrow, breaking every wheel.
+ dnf install -y arrow-devel-24.0.0 # For C++
+ dnf install -y arrow-glib-devel-24.0.0 # For GLib (C)
+ dnf install -y arrow-dataset-devel-24.0.0 # For Apache Arrow Dataset
C++
+ dnf install -y arrow-dataset-glib-devel-24.0.0 # For Apache Arrow
Dataset GLib (C)
+ dnf install -y arrow-acero-devel-24.0.0 # For Apache Arrow Acero C++
+ dnf install -y arrow-flight-devel-24.0.0 # For Apache Arrow Flight C++
+ dnf install -y arrow-flight-glib-devel-24.0.0 # For Apache Arrow
Flight GLib (C)
+ dnf install -y arrow-flight-sql-devel-24.0.0 # For Apache Arrow Flight
SQL C++
+ dnf install -y arrow-flight-sql-glib-devel-24.0.0 # For Apache Arrow
Flight SQL GLib (C)
+ dnf install -y parquet-devel-24.0.0 # For Apache Parquet C++
+ dnf install -y parquet-glib-devel-24.0.0 # For Apache Parquet GLib (C)
+ # Do NOT bundle Arrow/Parquet/Dataset/Acero/Compute into the wheel: the
+ # python/CMakeLists.txt RPATH ($ORIGIN/../pyarrow on Linux,
+ # @loader_path/../pyarrow on macOS) resolves them at runtime from the
+ # sibling pyarrow package (pyarrow ~= 24.0). auditwheel/delocate keep the
+ # preserved RPATH entry and only bundle whatever else is left (e.g. re2,
+ # zstd from the manylinux container).
+ CIBW_REPAIR_WHEEL_COMMAND_LINUX: |
+ auditwheel repair --exclude libarrow.so.* --exclude
libarrow_compute.so.* --exclude libarrow_dataset.so.* --exclude
libarrow_acero.so.* --exclude libparquet.so.* -w {dest_dir} {wheel}
+ CIBW_REPAIR_WHEEL_COMMAND_MACOS: |
+ delocate-wheel --exclude libarrow --exclude libarrow_compute --exclude
libarrow_dataset --exclude libarrow_acero --exclude libparquet -w {dest_dir} -v
{wheel}
steps:
- name: Checkout (needed for some tooling)
- uses: actions/checkout@v4
-
- - name: Set up Python
- uses: actions/setup-python@v5
+ uses: actions/checkout@v7
with:
- python-version: "3.9"
+ # fetch-depth 0 is required: the sdist is extracted inside this
+ # checkout and setuptools-scm (search_parent_directories) picks up
the
+ # parent .git. Without tags the wheel version collapses to "0.1.dev1"
+ # instead of reproducing the version baked into the sdist's PKG-INFO.
+ fetch-depth: 0
- - name: Set up Miniconda (Windows)
- if: matrix.os == 'windows'
- uses: conda-incubator/setup-miniconda@v3
+ - name: Set up Python
+ uses: actions/setup-python@v6
with:
- auto-activate-base: true
- miniforge-version: latest
- use-mamba: true
+ python-version: "3.10"
- name: Install Arrow (macOS)
if: matrix.os == 'macos'
shell: bash
run: |
set -euxo pipefail
- brew install apache-arrow
- echo "CMAKE_PREFIX_PATH=/usr/local" >> "$GITHUB_ENV"
- # Optional sanity check: ensure Arrow dylib isn't built for a newer
macOS than deployment target.
- if command -v otool >/dev/null 2>&1; then
- ls -lah /usr/local/lib || true
- if [ -f "/usr/local/lib/libarrow.dylib" ]; then
- otool -l "/usr/local/lib/libarrow.dylib" | (grep -A3 -E
'LC_BUILD_VERSION|LC_VERSION_MIN_MACOSX' || true)
- fi
- fi
+ brew bundle --file=cpp/Brewfile
+ # Homebrew's apache-arrow is built without ORC support, so it is
+ # removed here and Arrow is built from source in the next step (with
+ # ARROW_ORC), exactly like the python.yml CI workflow does.
+ brew uninstall apache-arrow || true
+ echo "CMAKE_PREFIX_PATH=$GITHUB_WORKSPACE/arrow-dist" >>
"$GITHUB_ENV"
+
+ - name: Cache Arrow build (macOS)
+ if: matrix.os == 'macos'
+ id: arrow-cache
+ uses: actions/cache@v6
+ with:
+ path: ${{ github.workspace }}/arrow-dist
+ # The hash of this workflow is part of the key so that changing the
+ # Arrow CMake flags below invalidates the cached build.
+ key: arrow-${{ runner.os }}-${{ runner.arch }}-${{ env.ARROW_VERSION
}}-${{ hashFiles('.github/workflows/python-wheel-workflow.yml') }}
- - name: Install Arrow (Windows)
- if: matrix.os == 'windows'
- shell: pwsh
+ - name: Build Arrow from source (macOS, with ORC)
+ if: matrix.os == 'macos' && steps.arrow-cache.outputs.cache-hit !=
'true'
run: |
- mamba install -y -c conda-forge arrow-cpp
- Add-Content $env:GITHUB_ENV
"CMAKE_PREFIX_PATH=$env:CONDA_PREFIX\\Library"
- Add-Content $env:GITHUB_ENV
"PATH=$env:CONDA_PREFIX\\Library\\bin;$env:PATH"
+ set -euxo pipefail
+ curl -fLsS -o "apache-arrow-${ARROW_VERSION}.tar.gz" \
+
"https://archive.apache.org/dist/arrow/arrow-${ARROW_VERSION}/apache-arrow-${ARROW_VERSION}.tar.gz";
+ tar xzf "apache-arrow-${ARROW_VERSION}.tar.gz"
+ cmake -S "apache-arrow-${ARROW_VERSION}/cpp" -B arrow-build \
+ -DCMAKE_BUILD_TYPE=Release \
+ -DCMAKE_INSTALL_PREFIX="${CMAKE_PREFIX_PATH}" \
+ -DCMAKE_INSTALL_LIBDIR=lib \
+ -DARROW_BUILD_SHARED=ON \
+ -DARROW_BUILD_STATIC=OFF \
+ -DARROW_DEPENDENCY_SOURCE=BUNDLED \
+ -DARROW_PARQUET=ON \
+ -DARROW_DATASET=ON \
+ -DARROW_ACERO=ON \
+ -DARROW_ORC=ON \
+ -DARROW_CSV=ON \
+ -DARROW_JSON=ON \
+ -DARROW_COMPUTE=ON \
+ -DARROW_FILESYSTEM=ON \
+ -DARROW_WITH_SNAPPY=ON \
+ -DARROW_WITH_ZSTD=ON \
+ -DARROW_WITH_LZ4=ON \
+ -DARROW_WITH_BZ2=ON \
+ -DARROW_WITH_BROTLI=ON \
+ -DARROW_WITH_ZLIB=ON \
+ -DARROW_WITH_UTF8PROC=ON \
+ -DARROW_WITH_RE2=ON \
+ -DARROW_S3=OFF \
+ -DARROW_GCS=OFF \
+ -DARROW_AZURE=OFF \
+ -DARROW_FLIGHT=OFF \
+ -DARROW_JEMALLOC=OFF \
+ -DARROW_MIMALLOC=OFF \
+ -DARROW_BUILD_TESTS=OFF \
+ -DARROW_BUILD_BENCHMARKS=OFF \
+ -DARROW_BUILD_EXAMPLES=OFF \
+ -DARROW_BUILD_INTEGRATION=OFF \
+ -DARROW_BUILD_UTILITIES=OFF \
+ -DARROW_PYTHON=OFF
+ cmake --build arrow-build --target install -j "$(sysctl -n hw.ncpu)"
+
- name: Download sdist artifact
uses: actions/download-artifact@v4
with:
@@ -254,11 +318,10 @@ jobs:
python -c "import graphar; import graphar._core; print('GraphAr
imported successfully')"
graphar --help >/dev/null
-
upload_test_pypi:
name: Publish to TestPyPI (auto)
needs: [build_wheels, build_sdist]
- runs-on: ubuntu-22.04
+ runs-on: ubuntu-24.04
if: github.event_name == 'push'
permissions:
contents: read
@@ -282,7 +345,7 @@ jobs:
upload_pypi:
name: Publish (manual)
needs: [build_wheels, build_sdist]
- runs-on: ubuntu-22.04
+ runs-on: ubuntu-24.04
if: github.event_name == 'workflow_dispatch' && inputs.publish_pypi
permissions:
contents: read
@@ -300,4 +363,4 @@ jobs:
- name: Publish to PyPI
uses:
pypa/gh-action-pypi-publish@release/2473ec6c6aa87f38946284d51289219fd0b87264
with:
- packages-dir: python/dist/
\ No newline at end of file
+ packages-dir: python/dist/
diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml
index 07a33303..741c7a4c 100644
--- a/.github/workflows/python.yml
+++ b/.github/workflows/python.yml
@@ -42,63 +42,79 @@ concurrency:
jobs:
ubuntu:
- name: Ubuntu 22.04 Python
- runs-on: ubuntu-latest
+ name: Ubuntu 24.04 Python
+ # Pinned, not ubuntu-latest: the Arrow apt packages are versioned per
+ # distro codename (24.0.0-1 exists for noble), and a mutable label would
+ # break the pinned apt install when GitHub rolls the label forward.
+ runs-on: ubuntu-24.04
env:
GAR_TEST_DATA: ${{ github.workspace }}/graphar-testing/
+ # Single source of version for Arrow. Must match the pyarrow pinned in
+ # python/pyproject.toml (pyarrow == 24.0.0). The "-1" suffix is the
+ # Debian package revision that apt requires for exact version matching.
+ ARROW_VERSION: "24.0.0-1"
steps:
- - uses: actions/checkout@v4
+ # fetch-depth 0 is required: the package version is derived from git tags
+ # by setuptools-scm (python/pyproject.toml), and a shallow checkout has no
+ # tags, which would make the build fail or produce a bogus version.
+ - uses: actions/checkout@v7
with:
submodules: true
+ fetch-depth: 0
- name: Install Python
- uses: actions/setup-python@v4
+ uses: actions/setup-python@v6
with:
python-version: '3.10'
- name: Install dependencies
run: |
-
- # install the latest arrow deb to test arrow
- wget -c https://apache.jfrog.io/artifactory/arrow/"$(lsb_release --id
--short | tr 'A-Z' 'a-z')"/apache-arrow-apt-source-latest-$(lsb_release
--codename --short).deb \
- -P /tmp/
- sudo apt-get install -y
/tmp/apache-arrow-apt-source-latest-"$(lsb_release --codename --short)".deb
- sudo apt-get update -y
- sudo apt install -y libarrow-dev \
- libarrow-dataset-dev \
- libarrow-acero-dev \
- libparquet-dev
+ sudo apt update
+ sudo apt install -y -V ca-certificates lsb-release wget
+ wget https://packages.apache.org/artifactory/arrow/$(lsb_release --id
--short | tr 'A-Z' 'a-z')/apache-arrow-apt-source-latest-$(lsb_release
--codename --short).deb
+ sudo apt install -y -V ./apache-arrow-apt-source-latest-$(lsb_release
--codename --short).deb
+ sudo apt update
+ # The Python extension links Arrow, ArrowDataset, ArrowAcero and
Parquet
+ # (see python/CMakeLists.txt), so all dev packages are required. They
+ # must be installed in a single apt invocation with the version pinned:
+ # the 24.0.0-1 dev packages depend on each other with exact (=) version
+ # constraints, and apt does not resolve an exact version dependency
when
+ # a newer candidate (25.x) exists in the repository, so installing them
+ # one by one fails.
+ sudo apt install -y -V libarrow-dev=$ARROW_VERSION \
+ libarrow-dataset-dev=$ARROW_VERSION \
+ libarrow-acero-dev=$ARROW_VERSION \
+ libarrow-compute-dev=$ARROW_VERSION \
+ libparquet-dev=$ARROW_VERSION
sudo apt-get install -y ccache libcurl4-openssl-dev
git clone https://github.com/apache/incubator-graphar-testing.git
$GAR_TEST_DATA --depth 1
- name: Install GraphAr Python SDK
working-directory: "python"
- run: |
- pip install ./ -v
-
- - name: Install Poetry
- working-directory: python
run: |
pip install poetry --quiet
+ poetry env use python3
+ poetry install --with test --no-root
+ poetry run pip install . -v
- name: Run Cli Test
working-directory: "python"
run: |
- graphar --help
- graphar check -p ../testing/neo4j/MovieGraph.graph.yml
- graphar show -p ../testing/neo4j/MovieGraph.graph.yml -v Person
- graphar show -p ../testing/neo4j/MovieGraph.graph.yml -es Person -e
ACTED_IN -ed Movie
- graphar import -c ../testing/neo4j/data/import.mini.yml
+ poetry run graphar --help
+ poetry run graphar check -p ../testing/neo4j/MovieGraph.graph.yml
+ poetry run graphar show -p ../testing/neo4j/MovieGraph.graph.yml -v
Person
+ poetry run graphar show -p ../testing/neo4j/MovieGraph.graph.yml -es
Person -e ACTED_IN -ed Movie
+ poetry run graphar import -c ../testing/neo4j/data/import.mini.yml
- name: Run pytest
working-directory: "python"
run: |
- pytest test -v
+ poetry run pytest -vvv
- name: Upload coverage reports to Codecov
- uses: codecov/[email protected]
+ uses: codecov/codecov-action@v7
with:
token: ${{ secrets.CODECOV_TOKEN }}
@@ -110,43 +126,113 @@ jobs:
macos:
name: macos latest Python
- runs-on: macos-latest
+ # Pinned, not macos-latest: the runner OS also sets the effective macOS
+ # deployment target of the built artifacts, so a mutable label could change
+ # the produced wheel/extension compatibility without any code change.
+ runs-on: macos-15
env:
GAR_TEST_DATA: ${{ github.workspace }}/graphar-testing/
+ # Must match the pyarrow pinned in python/pyproject.toml (pyarrow ==
24.0.0).
+ ARROW_VERSION: "24.0.0"
+ # Where the Arrow built from source below is installed. CMAKE_PREFIX_PATH
+ # makes the graphar Python build (scikit-build-core) link against that
+ # Arrow at build time; at runtime Arrow is resolved from the sibling
+ # pyarrow package instead (see the RPATH setup in python/CMakeLists.txt).
+ CMAKE_PREFIX_PATH: ${{ github.workspace }}/arrow-dist
steps:
- - uses: actions/checkout@v4
+ # fetch-depth 0 is required: the package version is derived from git tags
+ # by setuptools-scm (python/pyproject.toml), and a shallow checkout has no
+ # tags, which would make the build fail or produce a bogus version.
+ - uses: actions/checkout@v7
with:
submodules: true
+ fetch-depth: 0
- name: Set up Python
- uses: actions/setup-python@v5
+ uses: actions/setup-python@v6
with:
python-version: '3.13'
+ - name: Cache Arrow build
+ id: arrow-cache
+ uses: actions/cache@v6
+ with:
+ path: ${{ env.CMAKE_PREFIX_PATH }}
+ # The hash of this workflow is part of the key so that changing the
+ # Arrow CMake flags below invalidates the cached build.
+ key: arrow-${{ runner.os }}-${{ runner.arch }}-${{ env.ARROW_VERSION
}}-${{ hashFiles('.github/workflows/python.yml') }}
+
- name: Install dependencies
run: |
brew bundle --file=cpp/Brewfile
-
+ # Homebrew's apache-arrow is built without ORC support, so it is
removed
+ # here and Arrow is built from source in the next step (with
ARROW_ORC).
+ brew uninstall apache-arrow || true
git clone https://github.com/apache/incubator-graphar-testing.git
$GAR_TEST_DATA --depth 1
+ - name: Build Arrow from source (with ORC)
+ if: steps.arrow-cache.outputs.cache-hit != 'true'
+ run: |
+ set -euxo pipefail
+ curl -fLsS -o "apache-arrow-${ARROW_VERSION}.tar.gz" \
+
"https://archive.apache.org/dist/arrow/arrow-${ARROW_VERSION}/apache-arrow-${ARROW_VERSION}.tar.gz";
+ tar xzf "apache-arrow-${ARROW_VERSION}.tar.gz"
+ cmake -S "apache-arrow-${ARROW_VERSION}/cpp" -B arrow-build \
+ -DCMAKE_BUILD_TYPE=Release \
+ -DCMAKE_INSTALL_PREFIX="${CMAKE_PREFIX_PATH}" \
+ -DCMAKE_INSTALL_LIBDIR=lib \
+ -DARROW_BUILD_SHARED=ON \
+ -DARROW_BUILD_STATIC=OFF \
+ -DARROW_DEPENDENCY_SOURCE=BUNDLED \
+ -DARROW_PARQUET=ON \
+ -DARROW_DATASET=ON \
+ -DARROW_ACERO=ON \
+ -DARROW_ORC=ON \
+ -DARROW_CSV=ON \
+ -DARROW_JSON=ON \
+ -DARROW_COMPUTE=ON \
+ -DARROW_FILESYSTEM=ON \
+ -DARROW_WITH_SNAPPY=ON \
+ -DARROW_WITH_ZSTD=ON \
+ -DARROW_WITH_LZ4=ON \
+ -DARROW_WITH_BZ2=ON \
+ -DARROW_WITH_BROTLI=ON \
+ -DARROW_WITH_ZLIB=ON \
+ -DARROW_WITH_UTF8PROC=ON \
+ -DARROW_WITH_RE2=ON \
+ -DARROW_S3=OFF \
+ -DARROW_GCS=OFF \
+ -DARROW_AZURE=OFF \
+ -DARROW_FLIGHT=OFF \
+ -DARROW_JEMALLOC=OFF \
+ -DARROW_MIMALLOC=OFF \
+ -DARROW_BUILD_TESTS=OFF \
+ -DARROW_BUILD_BENCHMARKS=OFF \
+ -DARROW_BUILD_EXAMPLES=OFF \
+ -DARROW_BUILD_INTEGRATION=OFF \
+ -DARROW_BUILD_UTILITIES=OFF \
+ -DARROW_PYTHON=OFF
+ cmake --build arrow-build --target install -j "$(sysctl -n hw.ncpu)"
+
- name: Install GraphAr Python SDK
working-directory: "python"
run: |
- pip install ./ -v
+ pip install poetry --quiet
+ poetry env use python3
+ poetry install --with test --no-root
+ poetry run pip install . -v
+
- name: Run Cli Test
working-directory: "python"
run: |
- graphar --help
- graphar --version
- graphar check -p ../testing/neo4j/MovieGraph.graph.yml
- graphar show -p ../testing/neo4j/MovieGraph.graph.yml -v Person
- graphar show -p ../testing/neo4j/MovieGraph.graph.yml -es Person -e
ACTED_IN -ed Movie
+ poetry run graphar --help
+ poetry run graphar check -p ../testing/neo4j/MovieGraph.graph.yml
+ poetry run graphar show -p ../testing/neo4j/MovieGraph.graph.yml -v
Person
+ poetry run graphar show -p ../testing/neo4j/MovieGraph.graph.yml -es
Person -e ACTED_IN -ed Movie
+ poetry run graphar import -c ../testing/neo4j/data/import.mini.yml
- name: Run pytest
working-directory: "python"
run: |
- pytest test -v
-
-
-# TODO: Add unit tests
+ poetry run pytest -vvv
diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt
index acbcf70f..aa84be3c 100644
--- a/python/CMakeLists.txt
+++ b/python/CMakeLists.txt
@@ -120,9 +120,7 @@ target_compile_definitions(_core PRIVATE
VERSION_INFO=${PROJECT_VERSION})
# Use platform-appropriate rpath so the Python extension can find the
# packaged libgraphar at runtime inside the wheel.
if(APPLE)
- # Keep @loader_path for runtime inside the wheel, and add Arrow/Parquet
- # library dirs so deallocate can resolve @rpath dependencies during repair.
- set(_core_rpath "@loader_path")
+ set(_core_rpath "@loader_path;@loader_path/../pyarrow") # explicitly add
pyarrow
if(_graphar_macos_rpaths)
list(JOIN _graphar_macos_rpaths ";" _graphar_macos_rpaths_joined)
set(_core_rpath "${_core_rpath};${_graphar_macos_rpaths_joined}")
@@ -132,14 +130,30 @@ if(APPLE)
if(TARGET graphar)
set_target_properties(graphar PROPERTIES BUILD_WITH_INSTALL_RPATH ON)
+ # Resolve Arrow at runtime from the sibling pyarrow package. The build-time
+ # Arrow dirs (_graphar_macos_rpaths) are kept only so linking succeeds and
+ # are absent on the user's machine, so @loader_path/../pyarrow is what
+ # actually resolves libarrow at runtime.
+ set(_graphar_rpath "@loader_path;@loader_path/../pyarrow")
if(_graphar_macos_rpaths)
set_target_properties(graphar PROPERTIES INSTALL_RPATH
-
"${_graphar_macos_rpaths_joined}")
+ "${_graphar_macos_rpaths_joined}")
+ set(_graphar_rpath "${_graphar_rpath};${_graphar_macos_rpaths_joined}")
endif()
+ set_target_properties(graphar PROPERTIES INSTALL_RPATH "${_graphar_rpath}")
endif()
else()
- # On Linux and other Unix, use $ORIGIN (escaped so CMake preserves the $)
- set_target_properties(_core PROPERTIES INSTALL_RPATH "\$ORIGIN")
+ # On Linux, point the runtime search path at the bundled Arrow inside the
+ # sibling pyarrow package ($ORIGIN/../pyarrow), instead of bundling a second
+ # copy of Arrow into the wheel. Both _core.so and libgraphar.so link Arrow
and
+ # record a NEEDED libarrow.so.* entry; with DT_RUNPATH each library is
resolved
+ # against its OWN runpath (resolution is not transitive), so the path must be
+ # set on the graphar target as well, not only on _core.
+ set(_graphar_linux_rpath "\$ORIGIN;\$ORIGIN/../pyarrow")
+ set_target_properties(_core PROPERTIES INSTALL_RPATH
"${_graphar_linux_rpath}")
+ if(TARGET graphar)
+ set_target_properties(graphar PROPERTIES INSTALL_RPATH
"${_graphar_linux_rpath}")
+ endif()
endif()
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/src/cli/ DESTINATION cli)
diff --git a/python/poetry.lock b/python/poetry.lock
index 2a24329d..b5245a7e 100644
--- a/python/poetry.lock
+++ b/python/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 2.2.1 and should not be
changed by hand.
+# This file is automatically @generated by Poetry 2.4.1 and should not be
changed by hand.
[[package]]
name = "annotated-types"
@@ -12,22 +12,6 @@ files = [
{file = "annotated_types-0.7.0.tar.gz", hash =
"sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
-[[package]]
-name = "click"
-version = "8.1.8"
-description = "Composable command line interface toolkit"
-optional = false
-python-versions = ">=3.7"
-groups = ["main"]
-markers = "python_version < \"3.11\""
-files = [
- {file = "click-8.1.8-py3-none-any.whl", hash =
"sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"},
- {file = "click-8.1.8.tar.gz", hash =
"sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"},
-]
-
-[package.dependencies]
-colorama = {version = "*", markers = "platform_system == \"Windows\""}
-
[[package]]
name = "click"
version = "8.3.0"
@@ -35,7 +19,6 @@ description = "Composable command line interface toolkit"
optional = false
python-versions = ">=3.10"
groups = ["main"]
-markers = "python_version >= \"3.11\""
files = [
{file = "click-8.3.0-py3-none-any.whl", hash =
"sha256:9b9f285302c6e3064f4330c05f05b81945b2a39544279343e6e7c5f27a9baddc"},
{file = "click-8.3.0.tar.gz", hash =
"sha256:e7b8232224eba16f4ebe410c25ced9f7875cb5f3263ffc93cc3e8da705e229c4"},
@@ -50,24 +33,24 @@ version = "0.4.6"
description = "Cross-platform colored terminal text."
optional = false
python-versions =
"!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
-groups = ["main"]
-markers = "platform_system == \"Windows\" or sys_platform == \"win32\""
+groups = ["main", "test"]
files = [
{file = "colorama-0.4.6-py2.py3-none-any.whl", hash =
"sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
{file = "colorama-0.4.6.tar.gz", hash =
"sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
]
+markers = {main = "platform_system == \"Windows\"", test = "sys_platform ==
\"win32\""}
[[package]]
name = "exceptiongroup"
-version = "1.3.0"
+version = "1.3.1"
description = "Backport of PEP 654 (exception groups)"
optional = false
python-versions = ">=3.7"
-groups = ["main"]
-markers = "python_version < \"3.11\""
+groups = ["test"]
+markers = "python_version == \"3.10\""
files = [
- {file = "exceptiongroup-1.3.0-py3-none-any.whl", hash =
"sha256:4d111e6e0c13d0644cad6ddaa7ed0261a0b36971f6d23e7ec9b4b9097da78a10"},
- {file = "exceptiongroup-1.3.0.tar.gz", hash =
"sha256:b241f5885f560bc56a59ee63ca4c6a8bfa46ae4ad651af316d4e81817bb9fd88"},
+ {file = "exceptiongroup-1.3.1-py3-none-any.whl", hash =
"sha256:a7a39a3bd276781e98394987d3a5701d0c4edffb633bb7a5144577f82c773598"},
+ {file = "exceptiongroup-1.3.1.tar.gz", hash =
"sha256:8b412432c6055b0b7d14c310000ae93352ed6754f70fa8f7c34141f91c4e3219"},
]
[package.dependencies]
@@ -76,27 +59,13 @@ typing-extensions = {version = ">=4.6.0", markers =
"python_version < \"3.13\""}
[package.extras]
test = ["pytest (>=6)"]
-[[package]]
-name = "iniconfig"
-version = "2.1.0"
-description = "brain-dead simple config-ini parsing"
-optional = false
-python-versions = ">=3.8"
-groups = ["main"]
-markers = "python_version < \"3.11\""
-files = [
- {file = "iniconfig-2.1.0-py3-none-any.whl", hash =
"sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"},
- {file = "iniconfig-2.1.0.tar.gz", hash =
"sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"},
-]
-
[[package]]
name = "iniconfig"
version = "2.3.0"
description = "brain-dead simple config-ini parsing"
optional = false
python-versions = ">=3.10"
-groups = ["main"]
-markers = "python_version >= \"3.11\""
+groups = ["test"]
files = [
{file = "iniconfig-2.3.0-py3-none-any.whl", hash =
"sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"},
{file = "iniconfig-2.3.0.tar.gz", hash =
"sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"},
@@ -108,7 +77,7 @@ version = "3.1.6"
description = "A very fast and expressive template engine."
optional = false
python-versions = ">=3.7"
-groups = ["main", "docs"]
+groups = ["docs"]
files = [
{file = "jinja2-3.1.6-py3-none-any.whl", hash =
"sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
{file = "jinja2-3.1.6.tar.gz", hash =
"sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
@@ -120,32 +89,6 @@ MarkupSafe = ">=2.0"
[package.extras]
i18n = ["Babel (>=2.7)"]
-[[package]]
-name = "markdown-it-py"
-version = "3.0.0"
-description = "Python port of markdown-it. Markdown parsing, done right!"
-optional = false
-python-versions = ">=3.8"
-groups = ["main"]
-markers = "python_version < \"3.11\""
-files = [
- {file = "markdown-it-py-3.0.0.tar.gz", hash =
"sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb"},
- {file = "markdown_it_py-3.0.0-py3-none-any.whl", hash =
"sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1"},
-]
-
-[package.dependencies]
-mdurl = ">=0.1,<1.0"
-
-[package.extras]
-benchmarking = ["psutil", "pytest", "pytest-benchmark"]
-code-style = ["pre-commit (>=3.0,<4.0)"]
-compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe
(>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"]
-linkify = ["linkify-it-py (>=1,<3)"]
-plugins = ["mdit-py-plugins"]
-profiling = ["gprof2dot"]
-rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx",
"sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
-testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
-
[[package]]
name = "markdown-it-py"
version = "4.0.0"
@@ -153,7 +96,6 @@ description = "Python port of markdown-it. Markdown parsing,
done right!"
optional = false
python-versions = ">=3.10"
groups = ["main"]
-markers = "python_version >= \"3.11\""
files = [
{file = "markdown_it_py-4.0.0-py3-none-any.whl", hash =
"sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147"},
{file = "markdown_it_py-4.0.0.tar.gz", hash =
"sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3"},
@@ -177,8 +119,8 @@ version = "2.5.4"
description = "A fast and complete Python implementation of Markdown"
optional = false
python-versions = "<4,>=3.9"
-groups = ["main", "docs"]
-markers = "python_version == \"3.11\""
+groups = ["docs"]
+markers = "python_version < \"3.12\""
files = [
{file = "markdown2-2.5.4-py3-none-any.whl", hash =
"sha256:3c4b2934e677be7fec0e6f2de4410e116681f4ad50ec8e5ba7557be506d3f439"},
{file = "markdown2-2.5.4.tar.gz", hash =
"sha256:a09873f0b3c23dbfae589b0080587df52ad75bb09a5fa6559147554736676889"},
@@ -196,7 +138,7 @@ version = "3.0.3"
description = "Safely add untrusted strings to HTML/XML markup."
optional = false
python-versions = ">=3.9"
-groups = ["main", "docs"]
+groups = ["docs"]
files = [
{file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash =
"sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"},
{file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash =
"sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"},
@@ -305,10 +247,10 @@ files = [
name = "numpy"
version = "2.0.2"
description = "Fundamental package for array computing in Python"
-optional = true
+optional = false
python-versions = ">=3.9"
-groups = ["main"]
-markers = "python_version < \"3.11\" and extra == \"test\""
+groups = ["test"]
+markers = "python_version == \"3.10\""
files = [
{file = "numpy-2.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash =
"sha256:51129a29dbe56f9ca83438b706e2e69a39892b5eda6cedcb6b0c9fdc9b0d3ece"},
{file = "numpy-2.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash =
"sha256:f15975dfec0cf2239224d80e32c3170b1d168335eaedee69da84fbe9f1f9cd04"},
@@ -361,10 +303,10 @@ files = [
name = "numpy"
version = "2.3.4"
description = "Fundamental package for array computing in Python"
-optional = true
+optional = false
python-versions = ">=3.11"
-groups = ["main"]
-markers = "python_version >= \"3.11\" and extra == \"test\""
+groups = ["test"]
+markers = "python_version >= \"3.11\""
files = [
{file = "numpy-2.3.4-cp311-cp311-macosx_10_9_x86_64.whl", hash =
"sha256:e78aecd2800b32e8347ce49316d3eaf04aed849cd5b38e0af39f829a4e59f5eb"},
{file = "numpy-2.3.4-cp311-cp311-macosx_11_0_arm64.whl", hash =
"sha256:7fd09cc5d65bda1e79432859c40978010622112e9194e581e3415a3eccc7f43f"},
@@ -444,24 +386,23 @@ files = [
[[package]]
name = "packaging"
-version = "25.0"
+version = "26.2"
description = "Core utilities for Python packages"
optional = false
python-versions = ">=3.8"
-groups = ["main"]
+groups = ["test"]
files = [
- {file = "packaging-25.0-py3-none-any.whl", hash =
"sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484"},
- {file = "packaging-25.0.tar.gz", hash =
"sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f"},
+ {file = "packaging-26.2-py3-none-any.whl", hash =
"sha256:5fc45236b9446107ff2415ce77c807cee2862cb6fac22b8a73826d0693b0980e"},
+ {file = "packaging-26.2.tar.gz", hash =
"sha256:ff452ff5a3e828ce110190feff1178bb1f2ea2281fa2075aadb987c2fb221661"},
]
[[package]]
name = "pandas"
version = "2.3.3"
description = "Powerful data structures for data analysis, time series, and
statistics"
-optional = true
+optional = false
python-versions = ">=3.9"
-groups = ["main"]
-markers = "extra == \"test\""
+groups = ["test"]
files = [
{file = "pandas-2.3.3-cp310-cp310-macosx_10_9_x86_64.whl", hash =
"sha256:376c6446ae31770764215a6c937f72d917f214b43560603cd60da6408f183b6c"},
{file = "pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl", hash =
"sha256:e19d192383eab2f4ceb30b412b22ea30690c9e618f78870357ae1d682912015a"},
@@ -561,8 +502,8 @@ version = "15.0.4"
description = "API Documentation for Python Projects"
optional = false
python-versions = ">=3.9"
-groups = ["main", "docs"]
-markers = "python_version < \"3.11\" or python_version >= \"3.12\""
+groups = ["docs"]
+markers = "python_version >= \"3.12\""
files = [
{file = "pdoc-15.0.4-py3-none-any.whl", hash =
"sha256:f9028e85e7bb8475b054e69bde1f6d26fc4693d25d9fa1b1ce9009bec7f7a5c4"},
{file = "pdoc-15.0.4.tar.gz", hash =
"sha256:cf9680f10f5b4863381f44ef084b1903f8f356acb0d4cc6b64576ba9fb712c82"},
@@ -579,8 +520,8 @@ version = "16.0.0"
description = "API Documentation for Python Projects"
optional = false
python-versions = ">=3.10"
-groups = ["main", "docs"]
-markers = "python_version == \"3.11\""
+groups = ["docs"]
+markers = "python_version < \"3.12\""
files = [
{file = "pdoc-16.0.0-py3-none-any.whl", hash =
"sha256:070b51de2743b9b1a4e0ab193a06c9e6c12cf4151cf9137656eebb16e8556628"},
{file = "pdoc-16.0.0.tar.gz", hash =
"sha256:fdadc40cc717ec53919e3cd720390d4e3bcd40405cb51c4918c119447f913514"},
@@ -598,7 +539,7 @@ version = "1.6.0"
description = "plugin and hook calling mechanisms for python"
optional = false
python-versions = ">=3.9"
-groups = ["main"]
+groups = ["test"]
files = [
{file = "pluggy-1.6.0-py3-none-any.whl", hash =
"sha256:e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746"},
{file = "pluggy-1.6.0.tar.gz", hash =
"sha256:7dcc130b76258d33b90f61b658791dede3486c3e6bfb003ee5c9bfb396dd22f3"},
@@ -608,23 +549,83 @@ files = [
dev = ["pre-commit", "tox"]
testing = ["coverage", "pytest", "pytest-benchmark"]
+[[package]]
+name = "pyarrow"
+version = "24.0.0"
+description = "Python library for Apache Arrow"
+optional = false
+python-versions = ">=3.10"
+groups = ["main"]
+files = [
+ {file = "pyarrow-24.0.0-cp310-cp310-macosx_12_0_arm64.whl", hash =
"sha256:7c2b98645d576a0b9616892ead22b64a83a5f043c5e2ca15ebcefcb5b70c80cb"},
+ {file = "pyarrow-24.0.0-cp310-cp310-macosx_12_0_x86_64.whl", hash =
"sha256:644a246325b8c69c595ad1dd4b463eba4b0cdb731370e4a86137d433208d6147"},
+ {file = "pyarrow-24.0.0-cp310-cp310-manylinux_2_28_aarch64.whl", hash =
"sha256:3a577bd840ca83f646f0a625dbc571dba7044c43c2d1503afc378b570954345c"},
+ {file = "pyarrow-24.0.0-cp310-cp310-manylinux_2_28_x86_64.whl", hash =
"sha256:e3268e43984d0b1a185c89b4cfff282a7ead12fc93f56cfd7088bdbcbe727041"},
+ {file = "pyarrow-24.0.0-cp310-cp310-musllinux_1_2_aarch64.whl", hash =
"sha256:2392d954fcb920f42d230284b677605e4e2fbb11f2821e823e642abd67fbb491"},
+ {file = "pyarrow-24.0.0-cp310-cp310-musllinux_1_2_x86_64.whl", hash =
"sha256:bec9373df11544592b0ba7ec2af0e35059e5f0e7647c6183a854dedd193298f1"},
+ {file = "pyarrow-24.0.0-cp310-cp310-win_amd64.whl", hash =
"sha256:c42ab9439498270139cc63e18847a02afe5c8b3ed9c931266533cfe378bd3591"},
+ {file = "pyarrow-24.0.0-cp311-cp311-macosx_12_0_arm64.whl", hash =
"sha256:b0e131f880cda8d04e076cee175a46fc0e8bc8b65c99c6c09dff6669335fde74"},
+ {file = "pyarrow-24.0.0-cp311-cp311-macosx_12_0_x86_64.whl", hash =
"sha256:1b2fe7f9a5566401a0ef2571f197eb92358925c1f0c8dba305d6e43ea0871bb3"},
+ {file = "pyarrow-24.0.0-cp311-cp311-manylinux_2_28_aarch64.whl", hash =
"sha256:0b3537c00fb8d384f15ac1e79b6eb6db04a16514c8c1d22e59a9b95c8ba42868"},
+ {file = "pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl", hash =
"sha256:14e31a3c9e35f1ab6356c6378f6f72830e6d2d5f1791df3774a7b097d18a6a1e"},
+ {file = "pyarrow-24.0.0-cp311-cp311-musllinux_1_2_aarch64.whl", hash =
"sha256:b7d9a514e73bc42711e6a35aaccf3587c520024fe0a25d830a1a8a27c15f4f57"},
+ {file = "pyarrow-24.0.0-cp311-cp311-musllinux_1_2_x86_64.whl", hash =
"sha256:b196eb3f931862af3fa84c2a253514d859c08e0d8fe020e07be12e75a5a9780c"},
+ {file = "pyarrow-24.0.0-cp311-cp311-win_amd64.whl", hash =
"sha256:35405aecb474e683fb36af650618fd5340ee5471fc65a21b36076a18bbc6c981"},
+ {file = "pyarrow-24.0.0-cp312-cp312-macosx_12_0_arm64.whl", hash =
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[[package]]
name = "pygments"
@@ -763,7 +785,7 @@ version = "7.4.4"
description = "pytest: simple powerful testing with Python"
optional = false
python-versions = ">=3.7"
-groups = ["main"]
+groups = ["test"]
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(>=3.56)", "mock", "no
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version = "2.9.0.post0"
description = "Extensions to the standard Python datetime module"
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+ {file = "tomli-2.4.1-cp314-cp314t-musllinux_1_2_x86_64.whl", hash =
"sha256:504aa796fe0569bb43171066009ead363de03675276d2d121ac1a4572397870f"},
+ {file = "tomli-2.4.1-cp314-cp314t-win32.whl", hash =
"sha256:b1d22e6e9387bf4739fbe23bfa80e93f6b0373a7f1b96c6227c32bef95a4d7a8"},
+ {file = "tomli-2.4.1-cp314-cp314t-win_amd64.whl", hash =
"sha256:2c1c351919aca02858f740c6d33adea0c5deea37f9ecca1cc1ef9e884a619d26"},
+ {file = "tomli-2.4.1-cp314-cp314t-win_arm64.whl", hash =
"sha256:eab21f45c7f66c13f2a9e0e1535309cee140182a9cdae1e041d02e47291e8396"},
+ {file = "tomli-2.4.1-py3-none-any.whl", hash =
"sha256:0d85819802132122da43cb86656f8d1f8c6587d54ae7dcaf30e90533028b49fe"},
+ {file = "tomli-2.4.1.tar.gz", hash =
"sha256:7c7e1a961a0b2f2472c1ac5b69affa0ae1132c39adcb67aba98568702b9cc23f"},
]
[[package]]
@@ -1013,7 +1037,7 @@ version = "4.15.0"
description = "Backported and Experimental Type Hints for Python 3.9+"
optional = false
python-versions = ">=3.9"
-groups = ["main"]
+groups = ["main", "test"]
files = [
{file = "typing_extensions-4.15.0-py3-none-any.whl", hash =
"sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548"},
{file = "typing_extensions-4.15.0.tar.gz", hash =
"sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466"},
@@ -1038,20 +1062,15 @@ typing-extensions = ">=4.12.0"
name = "tzdata"
version = "2025.2"
description = "Provider of IANA time zone data"
-optional = true
+optional = false
python-versions = ">=2"
-groups = ["main"]
-markers = "extra == \"test\""
+groups = ["test"]
files = [
{file = "tzdata-2025.2-py2.py3-none-any.whl", hash =
"sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"},
{file = "tzdata-2025.2.tar.gz", hash =
"sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"},
]
-[extras]
-docs = ["pdoc"]
-test = ["pandas", "typing_extensions"]
-
[metadata]
lock-version = "2.1"
-python-versions = ">=3.9"
-content-hash =
"6cc0ac1c9c1fc1c375be6f187e8e20a932a0a6daf0a30a2fc6574567feb30948"
+python-versions = ">=3.10"
+content-hash =
"d393441620363498f186234101c22d8381f15f1147e048906a2bd96b9bf1509f"
diff --git a/python/pyproject.toml b/python/pyproject.toml
index bc19fa63..73bac39a 100644
--- a/python/pyproject.toml
+++ b/python/pyproject.toml
@@ -16,35 +16,76 @@
# under the License.
[build-system]
-requires = ["scikit-build-core>=0.8.3", "pybind11", "ninja ~= 1.11"]
+requires = [
+ "scikit-build-core>=0.8.3",
+ "pybind11",
+ "ninja ~= 1.11",
+ "setuptools-scm",
+]
build-backend = "scikit_build_core.build"
[project]
name = "graphar"
-version = "0.13.0.dev1"
+# The version is derived from the git tags at build time;
+dynamic = ["version"]
description = "An open source, standard data file format for graph data
storage and retrieval."
readme = "README.md"
authors = [{ name = "GraphAr community", email = "[email protected]" }]
-requires-python = ">=3.9"
-dependencies = ["typer ~= 0.1", "pydantic ~= 2.0, < 2.12", "pyyaml ~= 6.0",
"pytest ~= 7.2"]
-license = {text = "Apache-2.0"}
+requires-python = ">=3.10"
+
+# The version of the PyArrow here should exactly match the version inside the
GraphAr core!!!
+dependencies = [
+ "pyarrow == 24.0.0",
+ "typer ~= 0.1",
+ "pydantic ~= 2.0",
+ "pyyaml ~= 6.0",
+]
+license = "Apache-2.0"
classifiers = [
- "License :: OSI Approved :: Apache Software License",
"Programming Language :: Python :: 3",
- "Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
+ "Programming Language :: Python :: 3.14",
]
+[tool.poetry]
+# Placeholder only: Poetry requires a version for the root package;
+version = "0.0.0"
+
[tool.poetry.group.docs]
optional = true
[tool.poetry.group.docs.dependencies]
pdoc = "*"
+[tool.poetry.group.test]
+optional = true
+
+[tool.poetry.group.test.dependencies]
+pandas = ">=2.0, <3.0"
+typing_extensions = ">=4.0, <5.0"
+pytest = ">=7.0, <8.0"
+
+[tool.setuptools_scm]
+# The git repository root is one level above python/ (the repo checkout),
+# so setuptools-scm must search parent directories for the .git metadata.
+search_parent_directories = true
+local_scheme = "no-local-version"
+
+[[tool.dynamic-metadata]]
+provider = "scikit_build_core.metadata.setuptools_scm"
+
+# Write the resolved version into the wheel as graphar/_version.py
+# (imported by src/graphar/__init__.py). Using generate (instead of
+# setuptools-scm's write_to) makes sure the file lands in the wheel even
+# though it is not tracked by git.
+[[tool.scikit-build.generate]]
+path = "graphar/_version.py"
+template = '__version__ = "${version}"'
+
[tool.scikit-build]
build-dir = "build"
@@ -56,10 +97,6 @@ include = [
"../NOTICE",
]
-[project.optional-dependencies]
-test = ["pandas ~= 2.0", "typing_extensions ~= 4.0"]
-docs = ["pdoc"]
-
[project.scripts]
graphar = "cli.graphar_cli:main"
@@ -67,7 +104,6 @@ graphar = "cli.graphar_cli:main"
src = ["src"]
line-length = 100
-
[tool.ruff.lint]
extend-select = [
"B", # flake8-bugbear
diff --git a/python/src/graphar/__init__.py b/python/src/graphar/__init__.py
index f29c3a1c..1014ae37 100644
--- a/python/src/graphar/__init__.py
+++ b/python/src/graphar/__init__.py
@@ -17,25 +17,53 @@
from __future__ import annotations
-from .graph_info import *
-from .high_level import *
+try:
+ # Generated by setuptools-scm at build time (see [tool.setuptools_scm]).
+ from ._version import __version__
+except ImportError: # source tree without a build
+ __version__ = "0.0.0"
+
+# Importing names through the submodules also makes the submodules themselves
+# available as attributes (e.g. graphar.graph_info), which tests rely on.
+from .graph_info import (
+ AdjacentList,
+ DataType,
+ EdgeInfo,
+ GraphInfo,
+ Property,
+ PropertyGroup,
+ VertexInfo,
+)
+from .high_level import (
+ BuilderEdge,
+ BuilderVertex,
+ Edge,
+ EdgeIter,
+ EdgesBuilder,
+ EdgesCollection,
+ Vertex,
+ VertexIter,
+ VerticesBuilder,
+ VerticesCollection,
+)
__all__ = [
- "GraphInfo",
- "VertexInfo",
- "EdgeInfo",
- "PropertyGroup",
- "Property",
- "DataType",
"AdjacentList",
- "Vertex",
+ "BuilderEdge",
+ "BuilderVertex",
+ "DataType",
"Edge",
- "VertexIter",
- "VerticesCollection",
+ "EdgeInfo",
"EdgeIter",
+ "EdgesBuilder",
"EdgesCollection",
- "BuilderVertex",
+ "GraphInfo",
+ "Property",
+ "PropertyGroup",
+ "Vertex",
+ "VertexInfo",
+ "VertexIter",
"VerticesBuilder",
- "BuilderEdge",
- "EdgesBuilder",
-]
\ No newline at end of file
+ "VerticesCollection",
+ "__version__",
+]
diff --git a/python/src/graphar/importer/config.py
b/python/src/graphar/importer/config.py
index 7322ddb4..afe5921d 100644
--- a/python/src/graphar/importer/config.py
+++ b/python/src/graphar/importer/config.py
@@ -15,18 +15,22 @@
# specific language governing permissions and limitations
# under the License.
-from enum import Enum
from logging import getLogger
from pathlib import Path
-from typing import Dict, List, Literal, Optional # TODO: move to the
TYPE_CHECKING block
+from typing import Literal # TODO: move to the TYPE_CHECKING block
-from pydantic import BaseModel, ConfigDict, field_validator, model_validator
+from pydantic import BaseModel, field_validator, model_validator
from typing_extensions import Self
logger = getLogger("graphar_cli")
# TODO: move them to constants.py
+# Supported source/file types. Kept as plain string literals (instead of an
+# Enum) so pydantic serializes them without enum-vs-str warnings.
+SUPPORTED_FILE_TYPES = ("parquet", "csv", "orc", "json")
+FILE_TYPE = Literal["parquet", "csv", "orc", "json"]
+
DEFAULT_FILE_TYPE = "parquet"
DEFAULT_ADJ_LIST_TYPE = "ordered_by_source"
DEFAULT_REGULAR_SEPARATOR = "_"
@@ -34,24 +38,17 @@ DEFAULT_VALIDATE_LEVEL = "weak"
DEFAULT_VERSION = "gar/v1"
-class FileType(str, Enum):
- parquet = "parquet"
- csv = "csv"
- orc = "orc"
- json = "json"
-
-
class GraphArConfig(BaseModel):
path: str
name: str
- vertex_chunk_size: Optional[int] = 100
- edge_chunk_size: Optional[int] = 1024
- file_type: FileType = DEFAULT_FILE_TYPE
+ vertex_chunk_size: int | None = 100
+ edge_chunk_size: int | None = 1024
+ file_type: FILE_TYPE = DEFAULT_FILE_TYPE
adj_list_type: Literal[
"ordered_by_source", "ordered_by_dest", "unordered_by_source",
"unordered_by_dest"
] = DEFAULT_ADJ_LIST_TYPE
validate_level: Literal["no", "weak", "strong"] = DEFAULT_VALIDATE_LEVEL
- version: Optional[str] = DEFAULT_VERSION
+ version: str | None = DEFAULT_VERSION
@field_validator("path")
def check_path(cls, v):
@@ -68,7 +65,7 @@ class Property(BaseModel):
name: str
data_type: Literal["bool", "int32", "int64", "float", "double", "string",
"date", "timestamp"]
is_primary: bool = False
- nullable: Optional[bool] = None
+ nullable: bool | None = None
@model_validator(mode="after")
def check_nullable(self) -> Self:
@@ -83,8 +80,8 @@ class Property(BaseModel):
class PropertyGroup(BaseModel):
- properties: List[Property]
- file_type: Optional[FileType] = None
+ properties: list[Property]
+ file_type: FILE_TYPE | None = None
@field_validator("properties")
def check_properties_length(cls, v):
@@ -95,10 +92,10 @@ class PropertyGroup(BaseModel):
class Source(BaseModel):
- file_type: Optional[FileType] = None
+ file_type: FILE_TYPE | None = None
path: str
delimiter: str = ","
- columns: Dict[str, str]
+ columns: dict[str, str]
@field_validator("path")
def check_path(cls, v):
@@ -122,7 +119,7 @@ class Source(BaseModel):
if file_type == "":
msg = f"File {self.path} has no file type suffix"
raise ValueError(msg)
- if file_type not in FileType.__members__:
+ if file_type not in SUPPORTED_FILE_TYPES:
msg = f"Invalid file type '{file_type}'"
raise ValueError(msg)
self.file_type = file_type
@@ -131,12 +128,12 @@ class Source(BaseModel):
class Vertex(BaseModel):
type: str
- labels: List[str] = []
- chunk_size: Optional[int] = None
- validate_level: Optional[Literal["no", "weak", "strong"]] = None
- prefix: Optional[str] = None
- property_groups: List[PropertyGroup]
- sources: List[Source]
+ labels: list[str] = []
+ chunk_size: int | None = None
+ validate_level: Literal["no", "weak", "strong"] | None = None
+ prefix: str | None = None
+ property_groups: list[PropertyGroup]
+ sources: list[Source]
@field_validator("property_groups")
def check_property_groups_length(cls, v):
@@ -164,7 +161,7 @@ class Vertex(BaseModel):
class AdjList(BaseModel):
ordered: bool
aligned_by: Literal["src", "dst"]
- file_type: Optional[FileType] = None
+ file_type: FILE_TYPE | None = None
class Edge(BaseModel):
@@ -173,12 +170,12 @@ class Edge(BaseModel):
src_prop: str
dst_type: str
dst_prop: str
- chunk_size: Optional[int] = None
- validate_level: Optional[Literal["no", "weak", "strong"]] = None
- adj_lists: List[AdjList] = []
- property_groups: List[PropertyGroup] = []
- sources: List[Source]
- prefix: Optional[str] = None
+ chunk_size: int | None = None
+ validate_level: Literal["no", "weak", "strong"] | None = None
+ adj_lists: list[AdjList] = []
+ property_groups: list[PropertyGroup] = []
+ sources: list[Source]
+ prefix: str | None = None
@field_validator("sources")
def check_sources_length(cls, v):
@@ -203,8 +200,8 @@ class Edge(BaseModel):
class ImportSchema(BaseModel):
- vertices: List[Vertex]
- edges: List[Edge]
+ vertices: list[Vertex]
+ edges: list[Edge]
@field_validator("vertices")
def check_property_groups_length(cls, v):
@@ -215,8 +212,6 @@ class ImportSchema(BaseModel):
class ImportConfig(BaseModel):
- model_config = ConfigDict(use_enum_values=True)
-
graphar: GraphArConfig
import_schema: ImportSchema
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