http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/master/CatalogJanitor.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/master/CatalogJanitor.html 
b/devapidocs/src-html/org/apache/hadoop/hbase/master/CatalogJanitor.html
index 0129065..f72db18 100644
--- a/devapidocs/src-html/org/apache/hadoop/hbase/master/CatalogJanitor.html
+++ b/devapidocs/src-html/org/apache/hadoop/hbase/master/CatalogJanitor.html
@@ -222,227 +222,228 @@
 <span class="sourceLineNo">214</span>  int scan() throws IOException {<a 
name="line.214"></a>
 <span class="sourceLineNo">215</span>    try {<a name="line.215"></a>
 <span class="sourceLineNo">216</span>      if 
(!alreadyRunning.compareAndSet(false, true)) {<a name="line.216"></a>
-<span class="sourceLineNo">217</span>        return 0;<a name="line.217"></a>
-<span class="sourceLineNo">218</span>      }<a name="line.218"></a>
-<span class="sourceLineNo">219</span>      Triple&lt;Integer, 
Map&lt;HRegionInfo, Result&gt;, Map&lt;HRegionInfo, Result&gt;&gt; scanTriple 
=<a name="line.219"></a>
-<span class="sourceLineNo">220</span>        
getMergedRegionsAndSplitParents();<a name="line.220"></a>
-<span class="sourceLineNo">221</span>      int count = 
scanTriple.getFirst();<a name="line.221"></a>
-<span class="sourceLineNo">222</span>      /**<a name="line.222"></a>
-<span class="sourceLineNo">223</span>       * clean merge regions first<a 
name="line.223"></a>
-<span class="sourceLineNo">224</span>       */<a name="line.224"></a>
-<span class="sourceLineNo">225</span>      int mergeCleaned = 0;<a 
name="line.225"></a>
-<span class="sourceLineNo">226</span>      Map&lt;HRegionInfo, Result&gt; 
mergedRegions = scanTriple.getSecond();<a name="line.226"></a>
-<span class="sourceLineNo">227</span>      for (Map.Entry&lt;HRegionInfo, 
Result&gt; e : mergedRegions.entrySet()) {<a name="line.227"></a>
-<span class="sourceLineNo">228</span>        PairOfSameType&lt;HRegionInfo&gt; 
p = MetaTableAccessor.getMergeRegions(e.getValue());<a name="line.228"></a>
-<span class="sourceLineNo">229</span>        HRegionInfo regionA = 
p.getFirst();<a name="line.229"></a>
-<span class="sourceLineNo">230</span>        HRegionInfo regionB = 
p.getSecond();<a name="line.230"></a>
-<span class="sourceLineNo">231</span>        if (regionA == null || regionB == 
null) {<a name="line.231"></a>
-<span class="sourceLineNo">232</span>          LOG.warn("Unexpected references 
regionA="<a name="line.232"></a>
-<span class="sourceLineNo">233</span>              + (regionA == null ? "null" 
: regionA.getRegionNameAsString())<a name="line.233"></a>
-<span class="sourceLineNo">234</span>              + ",regionB="<a 
name="line.234"></a>
-<span class="sourceLineNo">235</span>              + (regionB == null ? "null" 
: regionB.getRegionNameAsString())<a name="line.235"></a>
-<span class="sourceLineNo">236</span>              + " in merged region " + 
e.getKey().getRegionNameAsString());<a name="line.236"></a>
-<span class="sourceLineNo">237</span>        } else {<a name="line.237"></a>
-<span class="sourceLineNo">238</span>          if 
(cleanMergeRegion(e.getKey(), regionA, regionB)) {<a name="line.238"></a>
-<span class="sourceLineNo">239</span>            mergeCleaned++;<a 
name="line.239"></a>
-<span class="sourceLineNo">240</span>          }<a name="line.240"></a>
-<span class="sourceLineNo">241</span>        }<a name="line.241"></a>
-<span class="sourceLineNo">242</span>      }<a name="line.242"></a>
-<span class="sourceLineNo">243</span>      /**<a name="line.243"></a>
-<span class="sourceLineNo">244</span>       * clean split parents<a 
name="line.244"></a>
-<span class="sourceLineNo">245</span>       */<a name="line.245"></a>
-<span class="sourceLineNo">246</span>      Map&lt;HRegionInfo, Result&gt; 
splitParents = scanTriple.getThird();<a name="line.246"></a>
-<span class="sourceLineNo">247</span><a name="line.247"></a>
-<span class="sourceLineNo">248</span>      // Now work on our list of found 
parents. See if any we can clean up.<a name="line.248"></a>
-<span class="sourceLineNo">249</span>      int splitCleaned = 0;<a 
name="line.249"></a>
-<span class="sourceLineNo">250</span>      // regions whose parents are still 
around<a name="line.250"></a>
-<span class="sourceLineNo">251</span>      HashSet&lt;String&gt; 
parentNotCleaned = new HashSet&lt;String&gt;();<a name="line.251"></a>
-<span class="sourceLineNo">252</span>      for (Map.Entry&lt;HRegionInfo, 
Result&gt; e : splitParents.entrySet()) {<a name="line.252"></a>
-<span class="sourceLineNo">253</span>        if 
(!parentNotCleaned.contains(e.getKey().getEncodedName()) &amp;&amp;<a 
name="line.253"></a>
-<span class="sourceLineNo">254</span>            cleanParent(e.getKey(), 
e.getValue())) {<a name="line.254"></a>
-<span class="sourceLineNo">255</span>          splitCleaned++;<a 
name="line.255"></a>
-<span class="sourceLineNo">256</span>        } else {<a name="line.256"></a>
-<span class="sourceLineNo">257</span>          // We could not clean the 
parent, so it's daughters should not be<a name="line.257"></a>
-<span class="sourceLineNo">258</span>          // cleaned either 
(HBASE-6160)<a name="line.258"></a>
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PairOfSameType&lt;HRegionInfo&gt; daughters =<a name="line.259"></a>
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MetaTableAccessor.getDaughterRegions(e.getValue());<a name="line.260"></a>
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parentNotCleaned.add(daughters.getFirst().getEncodedName());<a 
name="line.261"></a>
-<span class="sourceLineNo">262</span>          
parentNotCleaned.add(daughters.getSecond().getEncodedName());<a 
name="line.262"></a>
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-<span class="sourceLineNo">264</span>      }<a name="line.264"></a>
-<span class="sourceLineNo">265</span>      if ((mergeCleaned + splitCleaned) 
!= 0) {<a name="line.265"></a>
-<span class="sourceLineNo">266</span>        LOG.info("Scanned " + count + " 
catalog row(s), gc'd " + mergeCleaned<a name="line.266"></a>
-<span class="sourceLineNo">267</span>            + " unreferenced merged 
region(s) and " + splitCleaned<a name="line.267"></a>
-<span class="sourceLineNo">268</span>            + " unreferenced parent 
region(s)");<a name="line.268"></a>
-<span class="sourceLineNo">269</span>      } else if (LOG.isTraceEnabled()) 
{<a name="line.269"></a>
-<span class="sourceLineNo">270</span>        LOG.trace("Scanned " + count + " 
catalog row(s), gc'd " + mergeCleaned<a name="line.270"></a>
-<span class="sourceLineNo">271</span>            + " unreferenced merged 
region(s) and " + splitCleaned<a name="line.271"></a>
-<span class="sourceLineNo">272</span>            + " unreferenced parent 
region(s)");<a name="line.272"></a>
-<span class="sourceLineNo">273</span>      }<a name="line.273"></a>
-<span class="sourceLineNo">274</span>      return mergeCleaned + 
splitCleaned;<a name="line.274"></a>
-<span class="sourceLineNo">275</span>    } finally {<a name="line.275"></a>
-<span class="sourceLineNo">276</span>      alreadyRunning.set(false);<a 
name="line.276"></a>
-<span class="sourceLineNo">277</span>    }<a name="line.277"></a>
-<span class="sourceLineNo">278</span>  }<a name="line.278"></a>
-<span class="sourceLineNo">279</span><a name="line.279"></a>
-<span class="sourceLineNo">280</span>  /**<a name="line.280"></a>
-<span class="sourceLineNo">281</span>   * Compare HRegionInfos in a way that 
has split parents sort BEFORE their<a name="line.281"></a>
-<span class="sourceLineNo">282</span>   * daughters.<a name="line.282"></a>
-<span class="sourceLineNo">283</span>   */<a name="line.283"></a>
-<span class="sourceLineNo">284</span>  static class SplitParentFirstComparator 
implements Comparator&lt;HRegionInfo&gt; {<a name="line.284"></a>
-<span class="sourceLineNo">285</span>    Comparator&lt;byte[]&gt; 
rowEndKeyComparator = new Bytes.RowEndKeyComparator();<a name="line.285"></a>
-<span class="sourceLineNo">286</span>    @Override<a name="line.286"></a>
-<span class="sourceLineNo">287</span>    public int compare(HRegionInfo left, 
HRegionInfo right) {<a name="line.287"></a>
-<span class="sourceLineNo">288</span>      // This comparator differs from the 
one HRegionInfo in that it sorts<a name="line.288"></a>
-<span class="sourceLineNo">289</span>      // parent before daughters.<a 
name="line.289"></a>
-<span class="sourceLineNo">290</span>      if (left == null) return -1;<a 
name="line.290"></a>
-<span class="sourceLineNo">291</span>      if (right == null) return 1;<a 
name="line.291"></a>
-<span class="sourceLineNo">292</span>      // Same table name.<a 
name="line.292"></a>
-<span class="sourceLineNo">293</span>      int result = 
left.getTable().compareTo(right.getTable());<a name="line.293"></a>
-<span class="sourceLineNo">294</span>      if (result != 0) return result;<a 
name="line.294"></a>
-<span class="sourceLineNo">295</span>      // Compare start keys.<a 
name="line.295"></a>
-<span class="sourceLineNo">296</span>      result = 
Bytes.compareTo(left.getStartKey(), right.getStartKey());<a name="line.296"></a>
-<span class="sourceLineNo">297</span>      if (result != 0) return result;<a 
name="line.297"></a>
-<span class="sourceLineNo">298</span>      // Compare end keys, but flip the 
operands so parent comes first<a name="line.298"></a>
-<span class="sourceLineNo">299</span>      result = 
rowEndKeyComparator.compare(right.getEndKey(), left.getEndKey());<a 
name="line.299"></a>
-<span class="sourceLineNo">300</span><a name="line.300"></a>
-<span class="sourceLineNo">301</span>      return result;<a 
name="line.301"></a>
-<span class="sourceLineNo">302</span>    }<a name="line.302"></a>
-<span class="sourceLineNo">303</span>  }<a name="line.303"></a>
-<span class="sourceLineNo">304</span><a name="line.304"></a>
-<span class="sourceLineNo">305</span>  /**<a name="line.305"></a>
-<span class="sourceLineNo">306</span>   * If daughters no longer hold 
reference to the parents, delete the parent.<a name="line.306"></a>
-<span class="sourceLineNo">307</span>   * @param parent HRegionInfo of split 
offlined parent<a name="line.307"></a>
-<span class="sourceLineNo">308</span>   * @param rowContent Content of 
&lt;code&gt;parent&lt;/code&gt; row in<a name="line.308"></a>
-<span class="sourceLineNo">309</span>   * 
&lt;code&gt;metaRegionName&lt;/code&gt;<a name="line.309"></a>
-<span class="sourceLineNo">310</span>   * @return True if we removed 
&lt;code&gt;parent&lt;/code&gt; from meta table and from<a name="line.310"></a>
-<span class="sourceLineNo">311</span>   * the filesystem.<a 
name="line.311"></a>
-<span class="sourceLineNo">312</span>   * @throws IOException<a 
name="line.312"></a>
-<span class="sourceLineNo">313</span>   */<a name="line.313"></a>
-<span class="sourceLineNo">314</span>  boolean cleanParent(final HRegionInfo 
parent, Result rowContent)<a name="line.314"></a>
-<span class="sourceLineNo">315</span>  throws IOException {<a 
name="line.315"></a>
-<span class="sourceLineNo">316</span>    boolean result = false;<a 
name="line.316"></a>
-<span class="sourceLineNo">317</span>    // Check whether it is a merged 
region and not clean reference<a name="line.317"></a>
-<span class="sourceLineNo">318</span>    // No necessary to check 
MERGEB_QUALIFIER because these two qualifiers will<a name="line.318"></a>
-<span class="sourceLineNo">319</span>    // be inserted/deleted together<a 
name="line.319"></a>
-<span class="sourceLineNo">320</span>    if 
(rowContent.getValue(HConstants.CATALOG_FAMILY,<a name="line.320"></a>
-<span class="sourceLineNo">321</span>        HConstants.MERGEA_QUALIFIER) != 
null) {<a name="line.321"></a>
-<span class="sourceLineNo">322</span>      // wait cleaning merge region 
first<a name="line.322"></a>
-<span class="sourceLineNo">323</span>      return result;<a 
name="line.323"></a>
-<span class="sourceLineNo">324</span>    }<a name="line.324"></a>
-<span class="sourceLineNo">325</span>    // Run checks on each daughter 
split.<a name="line.325"></a>
-<span class="sourceLineNo">326</span>    PairOfSameType&lt;HRegionInfo&gt; 
daughters = MetaTableAccessor.getDaughterRegions(rowContent);<a 
name="line.326"></a>
-<span class="sourceLineNo">327</span>    Pair&lt;Boolean, Boolean&gt; a = 
checkDaughterInFs(parent, daughters.getFirst());<a name="line.327"></a>
-<span class="sourceLineNo">328</span>    Pair&lt;Boolean, Boolean&gt; b = 
checkDaughterInFs(parent, daughters.getSecond());<a name="line.328"></a>
-<span class="sourceLineNo">329</span>    if (hasNoReferences(a) &amp;&amp; 
hasNoReferences(b)) {<a name="line.329"></a>
-<span class="sourceLineNo">330</span>      LOG.debug("Deleting region " + 
parent.getRegionNameAsString() +<a name="line.330"></a>
-<span class="sourceLineNo">331</span>        " because daughter splits no 
longer hold references");<a name="line.331"></a>
-<span class="sourceLineNo">332</span>      FileSystem fs = 
this.services.getMasterFileSystem().getFileSystem();<a name="line.332"></a>
-<span class="sourceLineNo">333</span>      if (LOG.isTraceEnabled()) 
LOG.trace("Archiving parent region: " + parent);<a name="line.333"></a>
-<span class="sourceLineNo">334</span>      
HFileArchiver.archiveRegion(this.services.getConfiguration(), fs, parent);<a 
name="line.334"></a>
-<span class="sourceLineNo">335</span>      
MetaTableAccessor.deleteRegion(this.connection, parent);<a name="line.335"></a>
-<span class="sourceLineNo">336</span>      result = true;<a 
name="line.336"></a>
-<span class="sourceLineNo">337</span>    }<a name="line.337"></a>
-<span class="sourceLineNo">338</span>    return result;<a name="line.338"></a>
-<span class="sourceLineNo">339</span>  }<a name="line.339"></a>
-<span class="sourceLineNo">340</span><a name="line.340"></a>
-<span class="sourceLineNo">341</span>  /**<a name="line.341"></a>
-<span class="sourceLineNo">342</span>   * @param p A pair where the first 
boolean says whether or not the daughter<a name="line.342"></a>
-<span class="sourceLineNo">343</span>   * region directory exists in the 
filesystem and then the second boolean says<a name="line.343"></a>
-<span class="sourceLineNo">344</span>   * whether the daughter has references 
to the parent.<a name="line.344"></a>
-<span class="sourceLineNo">345</span>   * @return True the passed 
&lt;code&gt;p&lt;/code&gt; signifies no references.<a name="line.345"></a>
-<span class="sourceLineNo">346</span>   */<a name="line.346"></a>
-<span class="sourceLineNo">347</span>  private boolean hasNoReferences(final 
Pair&lt;Boolean, Boolean&gt; p) {<a name="line.347"></a>
-<span class="sourceLineNo">348</span>    return !p.getFirst() || 
!p.getSecond();<a name="line.348"></a>
-<span class="sourceLineNo">349</span>  }<a name="line.349"></a>
-<span class="sourceLineNo">350</span><a name="line.350"></a>
-<span class="sourceLineNo">351</span>  /**<a name="line.351"></a>
-<span class="sourceLineNo">352</span>   * Checks if a daughter region -- 
either splitA or splitB -- still holds<a name="line.352"></a>
-<span class="sourceLineNo">353</span>   * references to parent.<a 
name="line.353"></a>
-<span class="sourceLineNo">354</span>   * @param parent Parent region<a 
name="line.354"></a>
-<span class="sourceLineNo">355</span>   * @param daughter Daughter region<a 
name="line.355"></a>
-<span class="sourceLineNo">356</span>   * @return A pair where the first 
boolean says whether or not the daughter<a name="line.356"></a>
-<span class="sourceLineNo">357</span>   * region directory exists in the 
filesystem and then the second boolean says<a name="line.357"></a>
-<span class="sourceLineNo">358</span>   * whether the daughter has references 
to the parent.<a name="line.358"></a>
-<span class="sourceLineNo">359</span>   * @throws IOException<a 
name="line.359"></a>
-<span class="sourceLineNo">360</span>   */<a name="line.360"></a>
-<span class="sourceLineNo">361</span>  Pair&lt;Boolean, Boolean&gt; 
checkDaughterInFs(final HRegionInfo parent, final HRegionInfo daughter)<a 
name="line.361"></a>
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name="line.362"></a>
-<span class="sourceLineNo">363</span>    if (daughter == null)  {<a 
name="line.363"></a>
-<span class="sourceLineNo">364</span>      return new Pair&lt;Boolean, 
Boolean&gt;(Boolean.FALSE, Boolean.FALSE);<a name="line.364"></a>
-<span class="sourceLineNo">365</span>    }<a name="line.365"></a>
-<span class="sourceLineNo">366</span><a name="line.366"></a>
-<span class="sourceLineNo">367</span>    FileSystem fs = 
this.services.getMasterFileSystem().getFileSystem();<a name="line.367"></a>
-<span class="sourceLineNo">368</span>    Path rootdir = 
this.services.getMasterFileSystem().getRootDir();<a name="line.368"></a>
-<span class="sourceLineNo">369</span>    Path tabledir = 
FSUtils.getTableDir(rootdir, daughter.getTable());<a name="line.369"></a>
-<span class="sourceLineNo">370</span><a name="line.370"></a>
-<span class="sourceLineNo">371</span>    Path daughterRegionDir = new 
Path(tabledir, daughter.getEncodedName());<a name="line.371"></a>
-<span class="sourceLineNo">372</span><a name="line.372"></a>
-<span class="sourceLineNo">373</span>    HRegionFileSystem regionFs = null;<a 
name="line.373"></a>
-<span class="sourceLineNo">374</span><a name="line.374"></a>
-<span class="sourceLineNo">375</span>    try {<a name="line.375"></a>
-<span class="sourceLineNo">376</span>      if (!FSUtils.isExists(fs, 
daughterRegionDir)) {<a name="line.376"></a>
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Boolean&gt;(Boolean.FALSE, Boolean.FALSE);<a name="line.377"></a>
-<span class="sourceLineNo">378</span>      }<a name="line.378"></a>
-<span class="sourceLineNo">379</span>    } catch (IOException ioe) {<a 
name="line.379"></a>
-<span class="sourceLineNo">380</span>      LOG.warn("Error trying to determine 
if daughter region exists, " +<a name="line.380"></a>
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references", ioe);<a name="line.381"></a>
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Boolean&gt;(Boolean.TRUE, Boolean.TRUE);<a name="line.382"></a>
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HRegionFileSystem.openRegionFromFileSystem(<a name="line.386"></a>
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this.services.getConfiguration(), fs, tabledir, daughter, true);<a 
name="line.387"></a>
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name="line.388"></a>
-<span class="sourceLineNo">389</span>      LOG.warn("Error trying to determine 
referenced files from : " + daughter.getEncodedName()<a name="line.389"></a>
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parent.getEncodedName() + " assuming has references", e);<a name="line.390"></a>
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Boolean&gt;(Boolean.TRUE, Boolean.TRUE);<a name="line.391"></a>
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name="line.394"></a>
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getTableDescriptor(parent.getTable());<a name="line.395"></a>
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parentDescriptor.getFamilies()) {<a name="line.396"></a>
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regionFs.hasReferences(family.getNameAsString()))) {<a name="line.397"></a>
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Boolean&gt;(Boolean.TRUE, Boolean.valueOf(references));<a name="line.401"></a>
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getTableDescriptor(final TableName tableName)<a name="line.404"></a>
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IOException {<a name="line.405"></a>
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this.services.getTableDescriptors().get(tableName);<a name="line.406"></a>
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-<span class="sourceLineNo">408</span><a name="line.408"></a>
-<span class="sourceLineNo">409</span>  /**<a name="line.409"></a>
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merge qualifiers, if so, try to clean<a name="line.410"></a>
-<span class="sourceLineNo">411</span>   * them<a name="line.411"></a>
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doesn't have merge qualifier now<a name="line.413"></a>
-<span class="sourceLineNo">414</span>   * @throws IOException<a 
name="line.414"></a>
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cleanMergeQualifier(final HRegionInfo region)<a name="line.416"></a>
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name="line.417"></a>
-<span class="sourceLineNo">418</span>    // Get merge regions if it is a 
merged region and already has merge<a name="line.418"></a>
-<span class="sourceLineNo">419</span>    // qualifier<a name="line.419"></a>
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mergeRegions = MetaTableAccessor<a name="line.420"></a>
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.getRegionsFromMergeQualifier(this.services.getConnection(),<a 
name="line.421"></a>
-<span class="sourceLineNo">422</span>          region.getRegionName());<a 
name="line.422"></a>
-<span class="sourceLineNo">423</span>    if (mergeRegions == null<a 
name="line.423"></a>
-<span class="sourceLineNo">424</span>        || (mergeRegions.getFirst() == 
null &amp;&amp; mergeRegions.getSecond() == null)) {<a name="line.424"></a>
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no need to clean<a name="line.425"></a>
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insert/delete these two qualifiers together<a name="line.428"></a>
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|| mergeRegions.getSecond() == null) {<a name="line.429"></a>
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region.getRegionNameAsString()<a name="line.430"></a>
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qualifier in META.");<a name="line.431"></a>
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name="line.435"></a>
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running");<a name="line.217"></a>
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Map&lt;HRegionInfo, Result&gt;, Map&lt;HRegionInfo, Result&gt;&gt; scanTriple 
=<a name="line.220"></a>
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getMergedRegionsAndSplitParents();<a name="line.221"></a>
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scanTriple.getFirst();<a name="line.222"></a>
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name="line.224"></a>
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mergedRegions = scanTriple.getSecond();<a name="line.227"></a>
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Result&gt; e : mergedRegions.entrySet()) {<a name="line.228"></a>
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p = MetaTableAccessor.getMergeRegions(e.getValue());<a name="line.229"></a>
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p.getFirst();<a name="line.230"></a>
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p.getSecond();<a name="line.231"></a>
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null) {<a name="line.232"></a>
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regionA="<a name="line.233"></a>
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: regionA.getRegionNameAsString())<a name="line.234"></a>
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name="line.235"></a>
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: regionB.getRegionNameAsString())<a name="line.236"></a>
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e.getKey().getRegionNameAsString());<a name="line.237"></a>
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(cleanMergeRegion(e.getKey(), regionA, regionB)) {<a name="line.239"></a>
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name="line.245"></a>
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splitParents = scanTriple.getThird();<a name="line.247"></a>
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parents. See if any we can clean up.<a name="line.249"></a>
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name="line.250"></a>
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around<a name="line.251"></a>
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parentNotCleaned = new HashSet&lt;String&gt;();<a name="line.252"></a>
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Result&gt; e : splitParents.entrySet()) {<a name="line.253"></a>
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(!parentNotCleaned.contains(e.getKey().getEncodedName()) &amp;&amp;<a 
name="line.254"></a>
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e.getValue())) {<a name="line.255"></a>
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name="line.256"></a>
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parent, so it's daughters should not be<a name="line.258"></a>
+<span class="sourceLineNo">259</span>          // cleaned either 
(HBASE-6160)<a name="line.259"></a>
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PairOfSameType&lt;HRegionInfo&gt; daughters =<a name="line.260"></a>
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MetaTableAccessor.getDaughterRegions(e.getValue());<a name="line.261"></a>
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parentNotCleaned.add(daughters.getFirst().getEncodedName());<a 
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parentNotCleaned.add(daughters.getSecond().getEncodedName());<a 
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!= 0) {<a name="line.266"></a>
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catalog row(s), gc'd " + mergeCleaned<a name="line.267"></a>
+<span class="sourceLineNo">268</span>            + " unreferenced merged 
region(s) and " + splitCleaned<a name="line.268"></a>
+<span class="sourceLineNo">269</span>            + " unreferenced parent 
region(s)");<a name="line.269"></a>
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{<a name="line.270"></a>
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catalog row(s), gc'd " + mergeCleaned<a name="line.271"></a>
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region(s) and " + splitCleaned<a name="line.272"></a>
+<span class="sourceLineNo">273</span>            + " unreferenced parent 
region(s)");<a name="line.273"></a>
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splitCleaned;<a name="line.275"></a>
+<span class="sourceLineNo">276</span>    } finally {<a name="line.276"></a>
+<span class="sourceLineNo">277</span>      alreadyRunning.set(false);<a 
name="line.277"></a>
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+<span class="sourceLineNo">279</span>  }<a name="line.279"></a>
+<span class="sourceLineNo">280</span><a name="line.280"></a>
+<span class="sourceLineNo">281</span>  /**<a name="line.281"></a>
+<span class="sourceLineNo">282</span>   * Compare HRegionInfos in a way that 
has split parents sort BEFORE their<a name="line.282"></a>
+<span class="sourceLineNo">283</span>   * daughters.<a name="line.283"></a>
+<span class="sourceLineNo">284</span>   */<a name="line.284"></a>
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implements Comparator&lt;HRegionInfo&gt; {<a name="line.285"></a>
+<span class="sourceLineNo">286</span>    Comparator&lt;byte[]&gt; 
rowEndKeyComparator = new Bytes.RowEndKeyComparator();<a name="line.286"></a>
+<span class="sourceLineNo">287</span>    @Override<a name="line.287"></a>
+<span class="sourceLineNo">288</span>    public int compare(HRegionInfo left, 
HRegionInfo right) {<a name="line.288"></a>
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one HRegionInfo in that it sorts<a name="line.289"></a>
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name="line.290"></a>
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name="line.291"></a>
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name="line.292"></a>
+<span class="sourceLineNo">293</span>      // Same table name.<a 
name="line.293"></a>
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left.getTable().compareTo(right.getTable());<a name="line.294"></a>
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name="line.295"></a>
+<span class="sourceLineNo">296</span>      // Compare start keys.<a 
name="line.296"></a>
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Bytes.compareTo(left.getStartKey(), right.getStartKey());<a name="line.297"></a>
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name="line.298"></a>
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operands so parent comes first<a name="line.299"></a>
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rowEndKeyComparator.compare(right.getEndKey(), left.getEndKey());<a 
name="line.300"></a>
+<span class="sourceLineNo">301</span><a name="line.301"></a>
+<span class="sourceLineNo">302</span>      return result;<a 
name="line.302"></a>
+<span class="sourceLineNo">303</span>    }<a name="line.303"></a>
+<span class="sourceLineNo">304</span>  }<a name="line.304"></a>
+<span class="sourceLineNo">305</span><a name="line.305"></a>
+<span class="sourceLineNo">306</span>  /**<a name="line.306"></a>
+<span class="sourceLineNo">307</span>   * If daughters no longer hold 
reference to the parents, delete the parent.<a name="line.307"></a>
+<span class="sourceLineNo">308</span>   * @param parent HRegionInfo of split 
offlined parent<a name="line.308"></a>
+<span class="sourceLineNo">309</span>   * @param rowContent Content of 
&lt;code&gt;parent&lt;/code&gt; row in<a name="line.309"></a>
+<span class="sourceLineNo">310</span>   * 
&lt;code&gt;metaRegionName&lt;/code&gt;<a name="line.310"></a>
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&lt;code&gt;parent&lt;/code&gt; from meta table and from<a name="line.311"></a>
+<span class="sourceLineNo">312</span>   * the filesystem.<a 
name="line.312"></a>
+<span class="sourceLineNo">313</span>   * @throws IOException<a 
name="line.313"></a>
+<span class="sourceLineNo">314</span>   */<a name="line.314"></a>
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parent, Result rowContent)<a name="line.315"></a>
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name="line.316"></a>
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name="line.317"></a>
+<span class="sourceLineNo">318</span>    // Check whether it is a merged 
region and not clean reference<a name="line.318"></a>
+<span class="sourceLineNo">319</span>    // No necessary to check 
MERGEB_QUALIFIER because these two qualifiers will<a name="line.319"></a>
+<span class="sourceLineNo">320</span>    // be inserted/deleted together<a 
name="line.320"></a>
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(rowContent.getValue(HConstants.CATALOG_FAMILY,<a name="line.321"></a>
+<span class="sourceLineNo">322</span>        HConstants.MERGEA_QUALIFIER) != 
null) {<a name="line.322"></a>
+<span class="sourceLineNo">323</span>      // wait cleaning merge region 
first<a name="line.323"></a>
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name="line.324"></a>
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+<span class="sourceLineNo">326</span>    // Run checks on each daughter 
split.<a name="line.326"></a>
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daughters = MetaTableAccessor.getDaughterRegions(rowContent);<a 
name="line.327"></a>
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checkDaughterInFs(parent, daughters.getFirst());<a name="line.328"></a>
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checkDaughterInFs(parent, daughters.getSecond());<a name="line.329"></a>
+<span class="sourceLineNo">330</span>    if (hasNoReferences(a) &amp;&amp; 
hasNoReferences(b)) {<a name="line.330"></a>
+<span class="sourceLineNo">331</span>      LOG.debug("Deleting region " + 
parent.getRegionNameAsString() +<a name="line.331"></a>
+<span class="sourceLineNo">332</span>        " because daughter splits no 
longer hold references");<a name="line.332"></a>
+<span class="sourceLineNo">333</span>      FileSystem fs = 
this.services.getMasterFileSystem().getFileSystem();<a name="line.333"></a>
+<span class="sourceLineNo">334</span>      if (LOG.isTraceEnabled()) 
LOG.trace("Archiving parent region: " + parent);<a name="line.334"></a>
+<span class="sourceLineNo">335</span>      
HFileArchiver.archiveRegion(this.services.getConfiguration(), fs, parent);<a 
name="line.335"></a>
+<span class="sourceLineNo">336</span>      
MetaTableAccessor.deleteRegion(this.connection, parent);<a name="line.336"></a>
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name="line.337"></a>
+<span class="sourceLineNo">338</span>    }<a name="line.338"></a>
+<span class="sourceLineNo">339</span>    return result;<a name="line.339"></a>
+<span class="sourceLineNo">340</span>  }<a name="line.340"></a>
+<span class="sourceLineNo">341</span><a name="line.341"></a>
+<span class="sourceLineNo">342</span>  /**<a name="line.342"></a>
+<span class="sourceLineNo">343</span>   * @param p A pair where the first 
boolean says whether or not the daughter<a name="line.343"></a>
+<span class="sourceLineNo">344</span>   * region directory exists in the 
filesystem and then the second boolean says<a name="line.344"></a>
+<span class="sourceLineNo">345</span>   * whether the daughter has references 
to the parent.<a name="line.345"></a>
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&lt;code&gt;p&lt;/code&gt; signifies no references.<a name="line.346"></a>
+<span class="sourceLineNo">347</span>   */<a name="line.347"></a>
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Pair&lt;Boolean, Boolean&gt; p) {<a name="line.348"></a>
+<span class="sourceLineNo">349</span>    return !p.getFirst() || 
!p.getSecond();<a name="line.349"></a>
+<span class="sourceLineNo">350</span>  }<a name="line.350"></a>
+<span class="sourceLineNo">351</span><a name="line.351"></a>
+<span class="sourceLineNo">352</span>  /**<a name="line.352"></a>
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either splitA or splitB -- still holds<a name="line.353"></a>
+<span class="sourceLineNo">354</span>   * references to parent.<a 
name="line.354"></a>
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name="line.355"></a>
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name="line.356"></a>
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boolean says whether or not the daughter<a name="line.357"></a>
+<span class="sourceLineNo">358</span>   * region directory exists in the 
filesystem and then the second boolean says<a name="line.358"></a>
+<span class="sourceLineNo">359</span>   * whether the daughter has references 
to the parent.<a name="line.359"></a>
+<span class="sourceLineNo">360</span>   * @throws IOException<a 
name="line.360"></a>
+<span class="sourceLineNo">361</span>   */<a name="line.361"></a>
+<span class="sourceLineNo">362</span>  Pair&lt;Boolean, Boolean&gt; 
checkDaughterInFs(final HRegionInfo parent, final HRegionInfo daughter)<a 
name="line.362"></a>
+<span class="sourceLineNo">363</span>  throws IOException {<a 
name="line.363"></a>
+<span class="sourceLineNo">364</span>    if (daughter == null)  {<a 
name="line.364"></a>
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Boolean&gt;(Boolean.FALSE, Boolean.FALSE);<a name="line.365"></a>
+<span class="sourceLineNo">366</span>    }<a name="line.366"></a>
+<span class="sourceLineNo">367</span><a name="line.367"></a>
+<span class="sourceLineNo">368</span>    FileSystem fs = 
this.services.getMasterFileSystem().getFileSystem();<a name="line.368"></a>
+<span class="sourceLineNo">369</span>    Path rootdir = 
this.services.getMasterFileSystem().getRootDir();<a name="line.369"></a>
+<span class="sourceLineNo">370</span>    Path tabledir = 
FSUtils.getTableDir(rootdir, daughter.getTable());<a name="line.370"></a>
+<span class="sourceLineNo">371</span><a name="line.371"></a>
+<span class="sourceLineNo">372</span>    Path daughterRegionDir = new 
Path(tabledir, daughter.getEncodedName());<a name="line.372"></a>
+<span class="sourceLineNo">373</span><a name="line.373"></a>
+<span class="sourceLineNo">374</span>    HRegionFileSystem regionFs = null;<a 
name="line.374"></a>
+<span class="sourceLineNo">375</span><a name="line.375"></a>
+<span class="sourceLineNo">376</span>    try {<a name="line.376"></a>
+<span class="sourceLineNo">377</span>      if (!FSUtils.isExists(fs, 
daughterRegionDir)) {<a name="line.377"></a>
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Boolean&gt;(Boolean.FALSE, Boolean.FALSE);<a name="line.378"></a>
+<span class="sourceLineNo">379</span>      }<a name="line.379"></a>
+<span class="sourceLineNo">380</span>    } catch (IOException ioe) {<a 
name="line.380"></a>
+<span class="sourceLineNo">381</span>      LOG.warn("Error trying to determine 
if daughter region exists, " +<a name="line.381"></a>
+<span class="sourceLineNo">382</span>               "assuming exists and has 
references", ioe);<a name="line.382"></a>
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Boolean&gt;(Boolean.TRUE, Boolean.TRUE);<a name="line.383"></a>
+<span class="sourceLineNo">384</span>    }<a name="line.384"></a>
+<span class="sourceLineNo">385</span><a name="line.385"></a>
+<span class="sourceLineNo">386</span>    try {<a name="line.386"></a>
+<span class="sourceLineNo">387</span>      regionFs = 
HRegionFileSystem.openRegionFromFileSystem(<a name="line.387"></a>
+<span class="sourceLineNo">388</span>          
this.services.getConfiguration(), fs, tabledir, daughter, true);<a 
name="line.388"></a>
+<span class="sourceLineNo">389</span>    } catch (IOException e) {<a 
name="line.389"></a>
+<span class="sourceLineNo">390</span>      LOG.warn("Error trying to determine 
referenced files from : " + daughter.getEncodedName()<a name="line.390"></a>
+<span class="sourceLineNo">391</span>          + ", to: " + 
parent.getEncodedName() + " assuming has references", e);<a name="line.391"></a>
+<span class="sourceLineNo">392</span>      return new Pair&lt;Boolean, 
Boolean&gt;(Boolean.TRUE, Boolean.TRUE);<a name="line.392"></a>
+<span class="sourceLineNo">393</span>    }<a name="line.393"></a>
+<span class="sourceLineNo">394</span><a name="line.394"></a>
+<span class="sourceLineNo">395</span>    boolean references = false;<a 
name="line.395"></a>
+<span class="sourceLineNo">396</span>    HTableDescriptor parentDescriptor = 
getTableDescriptor(parent.getTable());<a name="line.396"></a>
+<span class="sourceLineNo">397</span>    for (HColumnDescriptor family: 
parentDescriptor.getFamilies()) {<a name="line.397"></a>
+<span class="sourceLineNo">398</span>      if ((references = 
regionFs.hasReferences(family.getNameAsString()))) {<a name="line.398"></a>
+<span class="sourceLineNo">399</span>        break;<a name="line.399"></a>
+<span class="sourceLineNo">400</span>      }<a name="line.400"></a>
+<span class="sourceLineNo">401</span>    }<a name="line.401"></a>
+<span class="sourceLineNo">402</span>    return new Pair&lt;Boolean, 
Boolean&gt;(Boolean.TRUE, Boolean.valueOf(references));<a name="line.402"></a>
+<span class="sourceLineNo">403</span>  }<a name="line.403"></a>
+<span class="sourceLineNo">404</span><a name="line.404"></a>
+<span class="sourceLineNo">405</span>  private HTableDescriptor 
getTableDescriptor(final TableName tableName)<a name="line.405"></a>
+<span class="sourceLineNo">406</span>      throws FileNotFoundException, 
IOException {<a name="line.406"></a>
+<span class="sourceLineNo">407</span>    return 
this.services.getTableDescriptors().get(tableName);<a name="line.407"></a>
+<span class="sourceLineNo">408</span>  }<a name="line.408"></a>
+<span class="sourceLineNo">409</span><a name="line.409"></a>
+<span class="sourceLineNo">410</span>  /**<a name="line.410"></a>
+<span class="sourceLineNo">411</span>   * Checks if the specified region has 
merge qualifiers, if so, try to clean<a name="line.411"></a>
+<span class="sourceLineNo">412</span>   * them<a name="line.412"></a>
+<span class="sourceLineNo">413</span>   * @param region<a name="line.413"></a>
+<span class="sourceLineNo">414</span>   * @return true if the specified region 
doesn't have merge qualifier now<a name="line.414"></a>
+<span class="sourceLineNo">415</span>   * @throws IOException<a 
name="line.415"></a>
+<span class="sourceLineNo">416</span>   */<a name="line.416"></a>
+<span class="sourceLineNo">417</span>  public boolean 
cleanMergeQualifier(final HRegionInfo region)<a name="line.417"></a>
+<span class="sourceLineNo">418</span>      throws IOException {<a 
name="line.418"></a>
+<span class="sourceLineNo">419</span>    // Get merge regions if it is a 
merged region and already has merge<a name="line.419"></a>
+<span class="sourceLineNo">420</span>    // qualifier<a name="line.420"></a>
+<span class="sourceLineNo">421</span>    Pair&lt;HRegionInfo, HRegionInfo&gt; 
mergeRegions = MetaTableAccessor<a name="line.421"></a>
+<span class="sourceLineNo">422</span>        
.getRegionsFromMergeQualifier(this.services.getConnection(),<a 
name="line.422"></a>
+<span class="sourceLineNo">423</span>          region.getRegionName());<a 
name="line.423"></a>
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+<span class="sourceLineNo">432</span>          + " has only one merge 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.BatchOperationInProgress.html
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diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.BatchOperationInProgress.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.BatchOperationInProgress.html
index a0ca7d9..e2c4389 100644
--- 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.FlushResultImpl.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.FlushResultImpl.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.FlushResultImpl.html
index a0ca7d9..e2c4389 100644
--- 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.MutationBatch.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.MutationBatch.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.MutationBatch.html
index a0ca7d9..e2c4389 100644
--- 
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+++ 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.MutationBatch.html
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.PrepareFlushResult.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.PrepareFlushResult.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.PrepareFlushResult.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.PrepareFlushResult.html
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b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.PrepareFlushResult.html
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&amp;&amp; isolationLevel == IsolationLevel.READ_UNCOMMITTED) {<a 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RegionScannerImpl.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RegionScannerImpl.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RegionScannerImpl.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RegionScannerImpl.html
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.ReplayBatch.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.ReplayBatch.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.ReplayBatch.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.ReplayBatch.html
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IsolationLevel.READ_UNCOMMITTED) {<a name="line.1278"></a>
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 <span class="sourceLineNo">1279</span>      // This scan can read even 
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 <span class="sourceLineNo">1280</span>      return Long.MAX_VALUE;<a 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockContext.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockContext.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockContext.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockContext.html
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockImpl.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockImpl.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockImpl.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.RowLockImpl.html
+++ 
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.WriteState.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.WriteState.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.WriteState.html
index a0ca7d9..e2c4389 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.WriteState.html
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.html 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.html
index a0ca7d9..e2c4389 100644
--- a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/HRegion.html
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http://git-wip-us.apache.org/repos/asf/hbase-site/blob/6a13df3e/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/MultiVersionConcurrencyControl.WriteEntry.html
----------------------------------------------------------------------
diff --git 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/MultiVersionConcurrencyControl.WriteEntry.html
 
b/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/MultiVersionConcurrencyControl.WriteEntry.html
index bd087f6..5f46b26 100644
--- 
a/devapidocs/src-html/org/apache/hadoop/hbase/regionserver/MultiVersionConcurrencyControl.WriteEntry.html
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 <span class="sourceLineNo">157</span>   * How much is the read point 
advanced?<a name="line.157"></a>
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e.getWriteNumber()) {<a name="line.211"></a>
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count &gt; 0) {<a name="line.212"></a>
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+<span class="sourceLineNo">214</span>        }<a name="line.214"></a>
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finish the loop -- i.e. cleanup --and then<a name="line.219"></a>
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interrupt flag.<a name="line.220"></a>
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Thread.currentThread().interrupt();<a name="line.226"></a>
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+<span class="sourceLineNo">228</span>  }<a name="line.228"></a>
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completed by calling mvcc#complete or #completeAndWait.<a name="line.248"></a>
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+<span class="sourceLineNo">254</span><a name="line.254"></a>
+<span class="sourceLineNo">255</span>    WriteEntry(long writeNumber) {<a 
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+<span class="sourceLineNo">276</span><a name="line.276"></a>
+<span class="sourceLineNo">277</span>  public static final long FIXED_SIZE = 
ClassSize.align(<a name="line.277"></a>
+<span class="sourceLineNo">278</span>      ClassSize.OBJECT +<a 
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+<span class="sourceLineNo">279</span>      2 * Bytes.SIZEOF_LONG +<a 
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+<span class="sourceLineNo">280</span>      2 * ClassSize.REFERENCE);<a 
name="line.280"></a>
+<span class="sourceLineNo">281</span>}<a name="line.281"></a>
 
 
 

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