http://git-wip-us.apache.org/repos/asf/madlib-site/blob/95826612/community-artifacts/kNN-v2.ipynb
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+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# k-Nearest Neighbors\n",
+ "Finds k nearest data points to a given data point and outputs majority
vote value of output classes in case of classification, and average value of
target values in case of regression. KNN was first added in MADlib 1.10 and the
interface was updated in 1.13."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+
"/Users/fmcquillan/anaconda/lib/python2.7/site-packages/IPython/config.py:13:
ShimWarning: The `IPython.config` package has been deprecated. You should
import from traitlets.config instead.\n",
+ " \"You should import from traitlets.config instead.\", ShimWarning)\n",
+
"/Users/fmcquillan/anaconda/lib/python2.7/site-packages/IPython/utils/traitlets.py:5:
UserWarning: IPython.utils.traitlets has moved to a top-level traitlets
package.\n",
+ " warn(\"IPython.utils.traitlets has moved to a top-level traitlets
package.\")\n"
+ ]
+ }
+ ],
+ "source": [
+ "%load_ext sql"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "u'Connected: gpdbchina@madlib'"
+ ]
+ },
+ "execution_count": 2,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "# Greenplum 4.3.10.0\n",
+ "%sql postgresql://gpdbchina@10.194.10.68:61000/madlib\n",
+ " \n",
+ "# PostgreSQL local\n",
+ "#%sql postgresql://fmcquillan@localhost:5432/madlib\n",
+ "\n",
+ "# Greenplum 4.2.3.0\n",
+ "#%sql postgresql://gpdbchina@10.194.10.68:55000/madlib"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "1 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>version</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>MADlib version: 1.13-dev, git revision:
rel/v1.12-41-g4aa0732, cmake configuration time: Tue Dec 5 20:44:49 UTC 2017,
build type: Release, build system: Linux-2.6.18-238.27.1.el5.hotfix.bz516490, C
compiler: gcc 4.4.0, C++ compiler: g++ 4.4.0</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(u'MADlib version: 1.13-dev, git revision: rel/v1.12-41-g4aa0732,
cmake configuration time: Tue Dec 5 20:44:49 UTC 2017, build type: Release,
build system: Linux-2.6.18-238.27.1.el5.hotfix.bz516490, C compiler: gcc 4.4.0,
C++ compiler: g++ 4.4.0',)]"
+ ]
+ },
+ "execution_count": 3,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%sql select madlib.version();\n",
+ "#%sql select version();"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 1. Load data for classification"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "Done.\n",
+ "9 rows affected.\n",
+ "9 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " <th>label</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[1, 1]</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 2]</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>3</td>\n",
+ " <td>[3, 3]</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>4</td>\n",
+ " <td>[4, 4]</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>5</td>\n",
+ " <td>[4, 5]</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>6</td>\n",
+ " <td>[20, 50]</td>\n",
+ " <td>0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>7</td>\n",
+ " <td>[10, 31]</td>\n",
+ " <td>0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>8</td>\n",
+ " <td>[81, 13]</td>\n",
+ " <td>0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>9</td>\n",
+ " <td>[1, 111]</td>\n",
+ " <td>0</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(1, [1, 1], 1),\n",
+ " (2, [2, 2], 1),\n",
+ " (3, [3, 3], 1),\n",
+ " (4, [4, 4], 1),\n",
+ " (5, [4, 5], 1),\n",
+ " (6, [20, 50], 0),\n",
+ " (7, [10, 31], 0),\n",
+ " (8, [81, 13], 0),\n",
+ " (9, [1, 111], 0)]"
+ ]
+ },
+ "execution_count": 4,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql \n",
+ "DROP TABLE IF EXISTS knn_train_data;\n",
+ "\n",
+ "CREATE TABLE knn_train_data (\n",
+ " id integer, \n",
+ " data integer[], \n",
+ " label integer -- Integer label means for
classification\n",
+ " );\n",
+ "\n",
+ "INSERT INTO knn_train_data VALUES\n",
+ "(1, '{1,1}', 1),\n",
+ "(2, '{2,2}', 1),\n",
+ "(3, '{3,3}', 1),\n",
+ "(4, '{4,4}', 1),\n",
+ "(5, '{4,5}', 1),\n",
+ "(6, '{20,50}', 0),\n",
+ "(7, '{10,31}', 0),\n",
+ "(8, '{81,13}', 0),\n",
+ "(9, '{1,111}', 0);\n",
+ "\n",
+ "SELECT * FROM knn_train_data ORDER BY id;"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 2. Load data for regression"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "Done.\n",
+ "9 rows affected.\n",
+ "9 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " <th>label</th>\n",
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+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[1, 1]</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 2]</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>3</td>\n",
+ " <td>[3, 3]</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>4</td>\n",
+ " <td>[4, 4]</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>5</td>\n",
+ " <td>[4, 5]</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>6</td>\n",
+ " <td>[20, 50]</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>7</td>\n",
+ " <td>[10, 31]</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>8</td>\n",
+ " <td>[81, 13]</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>9</td>\n",
+ " <td>[1, 111]</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(1, [1, 1], 1.0),\n",
+ " (2, [2, 2], 1.0),\n",
+ " (3, [3, 3], 1.0),\n",
+ " (4, [4, 4], 1.0),\n",
+ " (5, [4, 5], 1.0),\n",
+ " (6, [20, 50], 0.0),\n",
+ " (7, [10, 31], 0.0),\n",
+ " (8, [81, 13], 0.0),\n",
+ " (9, [1, 111], 0.0)]"
+ ]
+ },
+ "execution_count": 5,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql\n",
+ "DROP TABLE IF EXISTS knn_train_data_reg;\n",
+ "\n",
+ "CREATE TABLE knn_train_data_reg (\n",
+ " id integer, \n",
+ " data integer[], \n",
+ " label float -- Float label means for regression\n",
+ " );\n",
+ "\n",
+ "INSERT INTO knn_train_data_reg VALUES\n",
+ "(1, '{1,1}', 1.0),\n",
+ "(2, '{2,2}', 1.0),\n",
+ "(3, '{3,3}', 1.0),\n",
+ "(4, '{4,4}', 1.0),\n",
+ "(5, '{4,5}', 1.0),\n",
+ "(6, '{20,50}', 0.0),\n",
+ "(7, '{10,31}', 0.0),\n",
+ "(8, '{81,13}', 0.0),\n",
+ "(9, '{1,111}', 0.0);\n",
+ "\n",
+ "SELECT * FROM knn_train_data_reg ORDER BY id;"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 3. Load testing data"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "Done.\n",
+ "6 rows affected.\n",
+ "6 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[2, 1]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 6]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>3</td>\n",
+ " <td>[15, 40]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>4</td>\n",
+ " <td>[12, 1]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>5</td>\n",
+ " <td>[2, 90]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>6</td>\n",
+ " <td>[50, 45]</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(1, [2, 1]),\n",
+ " (2, [2, 6]),\n",
+ " (3, [15, 40]),\n",
+ " (4, [12, 1]),\n",
+ " (5, [2, 90]),\n",
+ " (6, [50, 45])]"
+ ]
+ },
+ "execution_count": 6,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql \n",
+ "DROP TABLE IF EXISTS knn_test_data;\n",
+ "\n",
+ "CREATE TABLE knn_test_data (\n",
+ " id integer, \n",
+ " data integer[]\n",
+ " );\n",
+ "\n",
+ "INSERT INTO knn_test_data VALUES\n",
+ "(1, '{2,1}'),\n",
+ "(2, '{2,6}'),\n",
+ "(3, '{15,40}'),\n",
+ "(4, '{12,1}'),\n",
+ "(5, '{2,90}'),\n",
+ "(6, '{50,45}');\n",
+ "\n",
+ "SELECT * from knn_test_data ORDER BY id;"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 4. Run KNN for classification\n",
+ "Note that the nearest neighbors are sorted from closest to furthest from
the corresponding test point."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "1 rows affected.\n",
+ "6 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " <th>prediction</th>\n",
+ " <th>k_nearest_neighbours</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[2, 1]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[1, 2, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 6]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[5, 4, 3]</td>\n",
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+ " <td>3</td>\n",
+ " <td>[15, 40]</td>\n",
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+ " <tr>\n",
+ " <td>4</td>\n",
+ " <td>[12, 1]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[4, 5, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>5</td>\n",
+ " <td>[2, 90]</td>\n",
+ " <td>0.0</td>\n",
+ " <td>[9, 6, 7]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>6</td>\n",
+ " <td>[50, 45]</td>\n",
+ " <td>0.0</td>\n",
+ " <td>[6, 7, 8]</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(1, [2, 1], 1.0, [1, 2, 3]),\n",
+ " (2, [2, 6], 1.0, [5, 4, 3]),\n",
+ " (3, [15, 40], 0.0, [7, 6, 5]),\n",
+ " (4, [12, 1], 1.0, [4, 5, 3]),\n",
+ " (5, [2, 90], 0.0, [9, 6, 7]),\n",
+ " (6, [50, 45], 0.0, [6, 7, 8])]"
+ ]
+ },
+ "execution_count": 7,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql\n",
+ "DROP TABLE IF EXISTS knn_result_classification;\n",
+ "\n",
+ "SELECT * FROM madlib.knn(\n",
+ " 'knn_train_data', -- Table of training data\n",
+ " 'data', -- Col name of training data\n",
+ " 'id', -- Col name of id in train data\n",
+ " 'label', -- Training labels\n",
+ " 'knn_test_data', -- Table of test data\n",
+ " 'data', -- Col name of test data\n",
+ " 'id', -- Col name of id in test data\n",
+ " 'knn_result_classification', -- Output table\n",
+ " 3, -- Number of nearest neighbors\n",
+ " True, -- True to list nearest-neighbors
by id\n",
+ " 'madlib.squared_dist_norm2' -- Distance function\n",
+ " );\n",
+ "\n",
+ "SELECT * from knn_result_classification ORDER BY id;"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 5. Run KNN for regression"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "1 rows affected.\n",
+ "6 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " <th>prediction</th>\n",
+ " <th>k_nearest_neighbours</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[2, 1]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[1, 2, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 6]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[5, 4, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>3</td>\n",
+ " <td>[15, 40]</td>\n",
+ " <td>0.333333333333</td>\n",
+ " <td>[7, 6, 5]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>4</td>\n",
+ " <td>[12, 1]</td>\n",
+ " <td>1.0</td>\n",
+ " <td>[4, 5, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>5</td>\n",
+ " <td>[2, 90]</td>\n",
+ " <td>0.0</td>\n",
+ " <td>[9, 6, 7]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>6</td>\n",
+ " <td>[50, 45]</td>\n",
+ " <td>0.0</td>\n",
+ " <td>[6, 7, 8]</td>\n",
+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
+ "[(1, [2, 1], 1.0, [1, 2, 3]),\n",
+ " (2, [2, 6], 1.0, [5, 4, 3]),\n",
+ " (3, [15, 40], 0.333333333333333, [7, 6, 5]),\n",
+ " (4, [12, 1], 1.0, [4, 5, 3]),\n",
+ " (5, [2, 90], 0.0, [9, 6, 7]),\n",
+ " (6, [50, 45], 0.0, [6, 7, 8])]"
+ ]
+ },
+ "execution_count": 8,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql\n",
+ "DROP TABLE IF EXISTS knn_result_regression;\n",
+ "\n",
+ "SELECT * FROM madlib.knn(\n",
+ " 'knn_train_data_reg', -- Table of training data\n",
+ " 'data', -- Col name of training data\n",
+ " 'id', -- Col Name of id in train data\n",
+ " 'label', -- Training labels\n",
+ " 'knn_test_data', -- Table of test data\n",
+ " 'data', -- Col name of test data\n",
+ " 'id', -- Col name of id in test data\n",
+ " 'knn_result_regression', -- Output table\n",
+ " 3, -- Number of nearest neighbors\n",
+ " True, -- True to list nearest-neighbors
by id\n",
+ " 'madlib.dist_norm2' -- Distance function\n",
+ " );\n",
+ "\n",
+ "SELECT * FROM knn_result_regression ORDER BY id;"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# 6. List nearest neighbors only\n",
+ "(without doing classification or regression). Note that the nearest
neighbors are sorted from closest to furthest from the corresponding test
point."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Done.\n",
+ "1 rows affected.\n",
+ "6 rows affected.\n"
+ ]
+ },
+ {
+ "data": {
+ "text/html": [
+ "<table>\n",
+ " <tr>\n",
+ " <th>id</th>\n",
+ " <th>data</th>\n",
+ " <th>k_nearest_neighbours</th>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>1</td>\n",
+ " <td>[2, 1]</td>\n",
+ " <td>[2, 1, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>2</td>\n",
+ " <td>[2, 6]</td>\n",
+ " <td>[5, 4, 3]</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <td>3</td>\n",
+ " <td>[15, 40]</td>\n",
+ " <td>[7, 6, 5]</td>\n",
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+ " <td>4</td>\n",
+ " <td>[12, 1]</td>\n",
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+ " <td>5</td>\n",
+ " <td>[2, 90]</td>\n",
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+ " <tr>\n",
+ " <td>6</td>\n",
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+ " </tr>\n",
+ "</table>"
+ ],
+ "text/plain": [
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+ " (2, [2, 6], [5, 4, 3]),\n",
+ " (3, [15, 40], [7, 6, 5]),\n",
+ " (4, [12, 1], [4, 5, 3]),\n",
+ " (5, [2, 90], [9, 6, 7]),\n",
+ " (6, [50, 45], [6, 7, 8])]"
+ ]
+ },
+ "execution_count": 9,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "%%sql\n",
+ "DROP TABLE IF EXISTS knn_result_list_neighbors;\n",
+ "\n",
+ "SELECT * FROM madlib.knn(\n",
+ " 'knn_train_data_reg', -- Table of training data\n",
+ " 'data', -- Col name of training data\n",
+ " 'id', -- Col Name of id in train data\n",
+ " NULL, -- NULL training labels means just
list neighbors\n",
+ " 'knn_test_data', -- Table of test data\n",
+ " 'data', -- Col name of test data\n",
+ " 'id', -- Col name of id in test data\n",
+ " 'knn_result_list_neighbors', -- Output table\n",
+ " 3 -- Number of nearest neighbors\n",
+ " );\n",
+ "\n",
+ "SELECT * FROM knn_result_list_neighbors ORDER BY id;"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 2",
+ "language": "python",
+ "name": "python2"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 2
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython2",
+ "version": "2.7.12"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 1
+}
