olegmikul commented on issue #15208: Errors when compiling from source on Linux: string_fortified.h: stringop-truncation URL: https://github.com/apache/incubator-mxnet/issues/15208#issuecomment-500733237 Yes, I did make clean and git submodule update --recursive --init Still the error. Log: Makefile:219: "USE_LAPACK disabled because libraries were not found" g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/quantization/mkldnn/mkldnn_quantized_conv.cc -o build/src/operator/quantization/mkldnn/mkldnn_quantized_conv.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/quantization/mkldnn/mkldnn_quantized_fully_connected.cc -o build/src/operator/quantization/mkldnn/mkldnn_quantized_fully_connected.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_slice.cc -o build/src/operator/nn/mkldnn/mkldnn_slice.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_softmax.cc -o build/src/operator/nn/mkldnn/mkldnn_softmax.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_softmax_output.cc -o build/src/operator/nn/mkldnn/mkldnn_softmax_output.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_copy.cc -o build/src/operator/nn/mkldnn/mkldnn_copy.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_fully_connected.cc -o build/src/operator/nn/mkldnn/mkldnn_fully_connected.o g++7 -std=c++11 -c -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/ol/incubator-mxnet/3rdparty/mshadow/ -I/home/ol/incubator-mxnet/3rdparty/dmlc-core/include -fPIC -I/home/ol/incubator-mxnet/3rdparty/tvm/nnvm/include -I/home/ol/incubator-mxnet/3rdparty/dlpack/include -I/home/ol/incubator-mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -mf16c -DMSHADOW_USE_CUDA=0 -I/opt/intel/mkl/include -I/opt/intel/mkl/include -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_MKLDNN=1 -DUSE_MKL=1 -I/home/ol/incubator-mxnet/src/operator/nn/mkldnn/ -I/opt/intel/mkl/include -I/home/ol/incubator-mxnet/3rdparty/mkldnn/build/install/include -DMXNET_USE_OPENCV=1 -I/usr/include/opencv4/opencv -I/usr/include/opencv4 -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -MMD -c src/operator/nn/mkldnn/mkldnn_transpose.cc -o build/src/operator/nn/mkldnn/mkldnn_transpose.o In file included from /usr/include/c++/7/string:40:0, from include/mxnet/io.h:29, from src/operator/nn/mkldnn/./mkldnn_ops-inl.h:31, from src/operator/nn/mkldnn/mkldnn_slice.cc:28: /usr/include/c++/7/bits/char_traits.h: In member function ‘mkldnn::memory::primitive_desc mkldnn::memory::get_primitive_desc() const’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/nn/mkldnn/mkldnn_slice.o] Error 1 make: *** Waiting for unfinished jobs.... In file included from /usr/include/c++/7/string:40:0, from /home/ol/incubator-mxnet/3rdparty/dmlc-core/include/dmlc/logging.h:12, from src/operator/nn/mkldnn/../../softmax_output-inl.h:29, from src/operator/nn/mkldnn/mkldnn_softmax_output.cc:27: /usr/include/c++/7/bits/char_traits.h: In member function ‘mkldnn::memory::primitive_desc mkldnn::memory::get_primitive_desc() const’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/nn/mkldnn/mkldnn_softmax_output.o] Error 1 In file included from /usr/include/c++/7/string:40:0, from src/operator/nn/mkldnn/../softmax-inl.h:29, from src/operator/nn/mkldnn/mkldnn_copy.cc:26: /usr/include/c++/7/bits/char_traits.h: In member function ‘mkldnn::memory::primitive_desc mkldnn::memory::get_primitive_desc() const’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/nn/mkldnn/mkldnn_copy.o] Error 1 In file included from /usr/include/c++/7/string:40:0, from src/operator/nn/mkldnn/../softmax-inl.h:29, from src/operator/nn/mkldnn/mkldnn_softmax.cc:26: /usr/include/c++/7/bits/char_traits.h: In function ‘mkldnn::softmax_forward::primitive_desc mxnet::op::GetSoftmaxFwdPd(int, bool, const mkldnn::memory&)’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/nn/mkldnn/mkldnn_softmax.o] Error 1 In file included from /usr/include/c++/7/string:40:0, from src/operator/quantization/mkldnn/../../nn/mkldnn/mkldnn_fully_connected-inl.h:33, from src/operator/quantization/mkldnn/mkldnn_quantized_fully_connected.cc:28: /usr/include/c++/7/bits/char_traits.h: In member function ‘mkldnn::memory::primitive_desc mkldnn::primitive_desc::query_mpd(mkldnn::query, int) const’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/quantization/mkldnn/mkldnn_quantized_fully_connected.o] Error 1 In file included from /usr/include/c++/7/ios:40:0, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iterator:64, from src/operator/quantization/mkldnn/../../nn/mkldnn/mkldnn_base-inl.h:50, from src/operator/quantization/mkldnn/mkldnn_quantized_conv.cc:27: /usr/include/c++/7/bits/char_traits.h: In member function ‘mkldnn::memory::primitive_desc mkldnn::primitive_desc::query_mpd(mkldnn::query, int) const’: /usr/include/c++/7/bits/char_traits.h:350:66: internal compiler error: in c_readstr, at builtins.c:677 return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, __n)); ^ Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/> for instructions. make: *** [Makefile:509: build/src/operator/quantization/mkldnn/mkldnn_quantized_conv.o] Error 1
---------------------------------------------------------------- This is an automated message from the Apache Git Service. To respond to the message, please log on to GitHub and use the URL above to go to the specific comment. For queries about this service, please contact Infrastructure at: [email protected] With regards, Apache Git Services
