larry77 opened a new issue #15649: Installation Fails on Debian Stable Machine URL: https://github.com/apache/incubator-mxnet/issues/15649 Dear All, I tried installing the R package for my box (debian stable) according to the instructions here http://mxnet.incubator.apache.org/versions/master/install/ubuntu_setup.html#install-the-mxnet-package-for-r the first part i.e. ./install_mxnet_ubuntu_python.sh completed without errors, but the second script ./install_mxnet_ubuntu_r.sh failed. I enclose the final output of the first and the second script hoping that someone can help me out with this Many thanks! ############################################# Output of the python.sh script [...] -Wl,--whole-archive /home/lorenzo/mxnet/3rdparty/tvm/nnvm/lib/libnnvm.a -Wl,--no-whole-archive a - build/src/io/iter_libsvm.o a - build/src/common/utils.o a - build/src/common/rtc.o a - build/src/nnvm/gradient.o a - build/src/nnvm/legacy_op_util.o a - build/src/nnvm/tvm_bridge.o a - build/src/nnvm/graph_editor.o a - build/src/nnvm/legacy_json_util.o a - build/src/nnvm/plan_memory.o a - build/src/nnvm/low_precision_pass.o a - build/src/nnvm/amp_infer_unknown.o a - build/src/profiler/profiler.o a - build/src/profiler/aggregate_stats.o a - build/src/profiler/nvtx.o a - build/src/profiler/vtune.o a - build/src/imperative/cached_op.o a - build/src/imperative/imperative_utils.o a - build/src/imperative/imperative.o a - build/src/ndarray/ndarray_function.o a - build/src/ndarray/ndarray.o a - build/src/operator/instance_norm.o a - build/src/operator/subgraph_op_common.o a - build/src/operator/grid_generator.o a - build/src/operator/pooling_v1.o a - build/src/operator/loss_binary_op.o a - build/src/operator/sequence_reverse.o a - build/src/operator/swapaxis.o a - build/src/operator/rnn.o a - build/src/operator/convolution_v1.o a - build/src/operator/crop.o a - build/src/operator/control_flow.o a - build/src/operator/bilinear_sampler.o a - build/src/operator/softmax_output.o a - build/src/operator/roi_pooling.o a - build/src/operator/sequence_last.o a - build/src/operator/batch_norm_v1.o a - build/src/operator/cross_device_copy.o a - build/src/operator/svm_output.o a - build/src/operator/regression_output.o a - build/src/operator/l2_normalization.o a - build/src/operator/leaky_relu.o a - build/src/operator/c_lapack_api.o a - build/src/operator/identity_attach_KL_sparse_reg.o a - build/src/operator/make_loss.o a - build/src/operator/operator.o a - build/src/operator/operator_tune.o a - build/src/operator/correlation.o a - build/src/operator/operator_util.o a - build/src/operator/spatial_transformer.o a - build/src/operator/pad.o a - build/src/operator/slice_channel.o a - build/src/operator/sequence_mask.o a - build/src/operator/optimizer_op.o a - build/src/engine/naive_engine.o a - build/src/engine/openmp.o a - build/src/engine/threaded_engine_pooled.o a - build/src/engine/threaded_engine.o a - build/src/engine/engine.o a - build/src/engine/threaded_engine_perdevice.o a - build/src/storage/storage.o a - build/src/c_api/c_api_executor.o a - build/src/c_api/c_api_symbolic.o a - build/src/c_api/c_api_profile.o a - build/src/c_api/c_api_ndarray.o a - build/src/c_api/c_api_test.o a - build/src/c_api/c_predict_api.o a - build/src/c_api/c_api_function.o a - build/src/c_api/c_api.o a - build/src/c_api/c_api_error.o a - build/src/executor/inplace_addto_detect_pass.o a - build/src/executor/graph_executor.o a - build/src/executor/infer_graph_attr_pass.o a - build/src/executor/attach_op_execs_pass.o a - build/src/executor/attach_op_resource_pass.o a - build/src/kvstore/gradient_compression.o a - build/src/kvstore/kvstore_utils.o a - build/src/kvstore/kvstore.o a - build/src/resource.o a - build/src/base.o a - build/src/libinfo.o a - build/src/initialize.o g++ -DMSHADOW_FORCE_STREAM -Wall -Wsign-compare -O3 -DNDEBUG=1 -I/home/lorenzo/mxnet/3rdparty/mshadow/ -I/home/lorenzo/mxnet/3rdparty/dmlc-core/include -fPIC -I/home/lorenzo/mxnet/3rdparty/tvm/nnvm/include -I/home/lorenzo/mxnet/3rdparty/dlpack/include -I/home/lorenzo/mxnet/3rdparty/tvm/include -Iinclude -funroll-loops -Wno-unused-parameter -Wno-unknown-pragmas -Wno-unused-local-typedefs -msse3 -DMSHADOW_USE_F16C=0 -DMSHADOW_USE_CUDA=0 -DMSHADOW_USE_CBLAS=1 -DMSHADOW_USE_MKL=0 -DMSHADOW_RABIT_PS=0 -DMSHADOW_DIST_PS=0 -DMSHADOW_USE_PASCAL=0 -DMXNET_USE_OPENCV=1 -I/usr/include/opencv -fopenmp -DMXNET_USE_OPERATOR_TUNING=1 -DMSHADOW_INT64_TENSOR_SIZE=0 -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -DUSE_JEMALLOC -DMXNET_USE_NCCL=0 -DMXNET_USE_LIBJPEG_TURBO=0 -std=c++11 -o bin/im2rec tools/im2rec.cc build/src/operator/contrib/tvmop/ufunc.o build/src/operator/subgraph/mkldnn/mkldnn_subgraph_property.o build/src/operator/subgraph/mkldnn/mkldnn_conv.o build/src/operator/subgraph/mkldnn/mkldnn_fc.o build/src/operator/subgraph/tensorrt/tensorrt.o build/src/operator/subgraph/tensorrt/onnx_to_tensorrt.o build/src/operator/subgraph/tensorrt/nnvm_to_onnx.o build/src/operator/quantization/mkldnn/mkldnn_quantized_elemwise_add.o build/src/operator/quantization/mkldnn/mkldnn_quantized_conv.o build/src/operator/quantization/mkldnn/mkldnn_quantized_act.o build/src/operator/quantization/mkldnn/mkldnn_quantized_fully_connected.o build/src/operator/quantization/mkldnn/mkldnn_quantized_pooling.o build/src/operator/quantization/mkldnn/mkldnn_quantized_concat.o build/src/operator/nn/mkldnn/mkldnn_convolution.o build/src/operator/nn/mkldnn/mkldnn_concat.o build/src/operator/nn/mkldnn/mkldnn_flatten.o build/src/operator/nn/mkldnn/mkldnn_base.o build/src/operator/nn/mkldnn/mkldnn_slice.o build/src/operator/nn/mkldnn/mkldnn_reshape.o build/src/operator/nn/mkldnn/mkldnn_transpose.o build/src/operator/nn/mkldnn/mkldnn_act.o build/src/operator/nn/mkldnn/mkldnn_softmax.o build/src/operator/nn/mkldnn/mkldnn_softmax_output.o build/src/operator/nn/mkldnn/mkldnn_deconvolution.o build/src/operator/nn/mkldnn/mkldnn_copy.o build/src/operator/nn/mkldnn/mkldnn_fully_connected.o build/src/operator/nn/mkldnn/mkldnn_pooling.o build/src/operator/nn/mkldnn/mkldnn_sum.o build/src/operator/nn/cudnn/cudnn_algoreg.o build/src/operator/nn/cudnn/cudnn_batch_norm.o build/src/operator/tensor/elemwise_binary_broadcast_op_basic.o build/src/operator/tensor/sparse_retain.o build/src/operator/tensor/square_sum.o build/src/operator/tensor/matrix_op.o build/src/operator/tensor/elemwise_binary_op_basic.o build/src/operator/tensor/broadcast_reduce_op_value.o build/src/operator/tensor/init_op.o build/src/operator/tensor/elemwise_binary_broadcast_op_extended.o build/src/operator/tensor/histogram.o build/src/operator/tensor/broadcast_reduce_op_index.o build/src/operator/tensor/dot.o build/src/operator/tensor/elemwise_scatter_op.o build/src/operator/tensor/elemwise_binary_scalar_op_extended.o build/src/operator/tensor/ordering_op.o build/src/operator/tensor/elemwise_unary_op_basic.o build/src/operator/tensor/ravel.o build/src/operator/tensor/amp_cast.o build/src/operator/tensor/control_flow_op.o build/src/operator/tensor/elemwise_binary_scalar_op_basic.o build/src/operator/tensor/indexing_op.o build/src/operator/tensor/elemwise_binary_broadcast_op_logic.o build/src/operator/tensor/la_op.o build/src/operator/tensor/diag_op.o build/src/operator/tensor/elemwise_binary_op_logic.o build/src/operator/tensor/elemwise_binary_op_extended.o build/src/operator/tensor/elemwise_sum.o build/src/operator/tensor/cast_storage.o build/src/operator/tensor/elemwise_binary_scalar_op_logic.o build/src/operator/tensor/elemwise_binary_op.o build/src/operator/tensor/elemwise_unary_op_trig.o build/src/operator/contrib/multibox_target.o build/src/operator/contrib/sync_batch_norm.o build/src/operator/contrib/dgl_graph.o build/src/operator/contrib/count_sketch.o build/src/operator/contrib/krprod.o build/src/operator/contrib/bilinear_resize.o build/src/operator/contrib/hawkes_ll.o build/src/operator/contrib/nnz.o build/src/operator/contrib/quadratic_op.o build/src/operator/contrib/roi_align.o build/src/operator/contrib/proposal.o build/src/operator/contrib/deformable_psroi_pooling.o build/src/operator/contrib/fft.o build/src/operator/contrib/multibox_prior.o build/src/operator/contrib/gradient_multiplier_op.o build/src/operator/contrib/adamw.o build/src/operator/contrib/transformer.o build/src/operator/contrib/all_finite.o build/src/operator/contrib/index_array.o build/src/operator/contrib/multi_proposal.o build/src/operator/contrib/index_copy.o build/src/operator/contrib/bounding_box.o build/src/operator/contrib/amp_graph_pass.o build/src/operator/contrib/boolean_mask.o build/src/operator/contrib/psroi_pooling.o build/src/operator/contrib/deformable_convolution.o build/src/operator/contrib/ifft.o build/src/operator/contrib/multibox_detection.o build/src/operator/contrib/optimizer_op.o build/src/operator/contrib/adaptive_avg_pooling.o build/src/operator/custom/native_op.o build/src/operator/custom/ndarray_op.o build/src/operator/custom/custom.o build/src/operator/image/crop.o build/src/operator/image/image_random.o build/src/operator/image/resize.o build/src/operator/nnpack/nnpack_util.o build/src/operator/tvmop/op_module.o build/src/operator/random/sample_multinomial_op.o build/src/operator/random/pdf_op.o build/src/operator/random/multisample_op.o build/src/operator/random/unique_sample_op.o build/src/operator/random/sample_op.o build/src/operator/random/shuffle_op.o build/src/operator/subgraph/build_subgraph.o build/src/operator/subgraph/default_subgraph_property_v2.o build/src/operator/subgraph/default_subgraph_property.o build/src/operator/quantization/quantized_elemwise_add.o build/src/operator/quantization/dequantize.o build/src/operator/quantization/quantize_graph_pass.o build/src/operator/quantization/quantized_flatten.o build/src/operator/quantization/quantized_conv.o build/src/operator/quantization/quantized_fully_connected.o build/src/operator/quantization/quantized_pooling.o build/src/operator/quantization/quantize_v2.o build/src/operator/quantization/quantized_concat.o build/src/operator/quantization/requantize.o build/src/operator/quantization/quantized_activation.o build/src/operator/quantization/quantize.o build/src/operator/nn/moments.o build/src/operator/nn/softmax.o build/src/operator/nn/group_norm.o build/src/operator/nn/pooling.o build/src/operator/nn/deconvolution.o build/src/operator/nn/activation.o build/src/operator/nn/upsampling.o build/src/operator/nn/ctc_loss.o build/src/operator/nn/fully_connected.o build/src/operator/nn/convolution.o build/src/operator/nn/lrn.o build/src/operator/nn/layer_norm.o build/src/operator/nn/concat.o build/src/operator/nn/softmax_activation.o build/src/operator/nn/batch_norm.o build/src/operator/nn/dropout.o build/src/io/io.o build/src/io/image_aug_default.o build/src/io/iter_image_det_recordio.o build/src/io/image_io.o build/src/io/image_det_aug_default.o build/src/io/iter_csv.o build/src/io/iter_image_recordio.o build/src/io/iter_mnist.o build/src/io/iter_image_recordio_2.o build/src/io/iter_libsvm.o build/src/common/utils.o build/src/common/rtc.o build/src/nnvm/gradient.o build/src/nnvm/legacy_op_util.o build/src/nnvm/tvm_bridge.o build/src/nnvm/graph_editor.o build/src/nnvm/legacy_json_util.o build/src/nnvm/plan_memory.o build/src/nnvm/low_precision_pass.o build/src/nnvm/amp_infer_unknown.o build/src/profiler/profiler.o build/src/profiler/aggregate_stats.o build/src/profiler/nvtx.o build/src/profiler/vtune.o build/src/imperative/cached_op.o build/src/imperative/imperative_utils.o build/src/imperative/imperative.o build/src/ndarray/ndarray_function.o build/src/ndarray/ndarray.o build/src/operator/instance_norm.o build/src/operator/subgraph_op_common.o build/src/operator/grid_generator.o build/src/operator/pooling_v1.o build/src/operator/loss_binary_op.o build/src/operator/sequence_reverse.o build/src/operator/swapaxis.o build/src/operator/rnn.o build/src/operator/convolution_v1.o build/src/operator/crop.o build/src/operator/control_flow.o build/src/operator/bilinear_sampler.o build/src/operator/softmax_output.o build/src/operator/roi_pooling.o build/src/operator/sequence_last.o build/src/operator/batch_norm_v1.o build/src/operator/cross_device_copy.o build/src/operator/svm_output.o build/src/operator/regression_output.o build/src/operator/l2_normalization.o build/src/operator/leaky_relu.o build/src/operator/c_lapack_api.o build/src/operator/identity_attach_KL_sparse_reg.o build/src/operator/make_loss.o build/src/operator/operator.o build/src/operator/operator_tune.o build/src/operator/correlation.o build/src/operator/operator_util.o build/src/operator/spatial_transformer.o build/src/operator/pad.o build/src/operator/slice_channel.o build/src/operator/sequence_mask.o build/src/operator/optimizer_op.o build/src/engine/naive_engine.o build/src/engine/openmp.o build/src/engine/threaded_engine_pooled.o build/src/engine/threaded_engine.o build/src/engine/engine.o build/src/engine/threaded_engine_perdevice.o build/src/storage/storage.o build/src/c_api/c_api_executor.o build/src/c_api/c_api_symbolic.o build/src/c_api/c_api_profile.o build/src/c_api/c_api_ndarray.o build/src/c_api/c_api_test.o build/src/c_api/c_predict_api.o build/src/c_api/c_api_function.o build/src/c_api/c_api.o build/src/c_api/c_api_error.o build/src/executor/inplace_addto_detect_pass.o build/src/executor/graph_executor.o build/src/executor/infer_graph_attr_pass.o build/src/executor/attach_op_execs_pass.o build/src/executor/attach_op_resource_pass.o build/src/kvstore/gradient_compression.o build/src/kvstore/kvstore_utils.o build/src/kvstore/kvstore.o build/src/resource.o build/src/base.o build/src/libinfo.o build/src/initialize.o /home/lorenzo/mxnet/3rdparty/dmlc-core/libdmlc.a /home/lorenzo/mxnet/3rdparty/tvm/nnvm/lib/libnnvm.a -pthread -lm -lopenblas -fopenmp -lrt -lopencv_highgui -lopencv_imgcodecs -lopencv_imgproc -lopencv_core /usr/lib/x86_64-linux-gnu/libjemalloc.so and output of the R.sh script [...] ^~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/home/jranke/git/r-backports/buster/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c symbol.cc -o symbol.o In file included from symbol.cc:28: ./symbol.h: In destructor ‘mxnet::R::Symbol::~Symbol()’: ./base.h:102:45: warning: throw will always call terminate() [-Wterminate] throw Rcpp::exception(MXGetLastError()); \ ^ ./symbol.h:138:5: note: in expansion of macro ‘MX_CALL’ MX_CALL(MXSymbolFree(handle_)); ^~~~~~~ ./base.h:102:45: note: in C++11 destructors default to noexcept throw Rcpp::exception(MXGetLastError()); \ ^ ./symbol.h:138:5: note: in expansion of macro ‘MX_CALL’ MX_CALL(MXSymbolFree(handle_)); ^~~~~~~ g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o mxnet.so executor.o export.o im2rec.o io.o kvstore.o mxnet.o ndarray.o symbol.o -llapack -lblas -L/usr/lib/R/lib -lR make[1]: Leaving directory '/home/lorenzo/mxnet/R-package/src' installing to /usr/local/lib/R/site-library/00LOCK-R-package/00new/mxnet/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Note: ... may be used in an incorrect context ** help No man pages found in package ‘mxnet’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [1] "Loading local: inst/libs/libmxnet.so" Error: package or namespace load failed for ‘mxnet’: .onLoad failed in loadNamespace() for 'mxnet', details: call: dyn.load("R-package/inst/libs/libmxnet.so", local = FALSE) error: unable to load shared object '/home/lorenzo/mxnet/R-package/R-package/inst/libs/libmxnet.so': /home/lorenzo/mxnet/R-package/R-package/inst/libs/libmxnet.so: cannot open shared object file: No such file or directory Error: loading failed Execution halted ERROR: loading failed * removing ‘/usr/local/lib/R/site-library/mxnet’ make: *** [Makefile:701: rpkg] Error 1
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