ccollins476ad opened a new pull request #388: upgrade: Don't abort if repo 
references bad commit
   Newt would abort the upgrade if a repo's dependency list specifies a 
nonexistent commit.  This was bad because it means a repo maintainer could 
break `newt upgrade` for all users by deleting a tag or by introducing a typo 
to their `repository.yml` file.
   Now newt just warns the user about the problem and proceeds with the upgrade.

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