remove commented out code
Project: http://git-wip-us.apache.org/repos/asf/oodt/repo Commit: http://git-wip-us.apache.org/repos/asf/oodt/commit/0e3305c0 Tree: http://git-wip-us.apache.org/repos/asf/oodt/tree/0e3305c0 Diff: http://git-wip-us.apache.org/repos/asf/oodt/diff/0e3305c0 Branch: refs/heads/master Commit: 0e3305c0922060a70b4416494780f8f1a107e057 Parents: a8934d0 Author: Tom Barber <[email protected]> Authored: Sun Jan 10 23:10:06 2016 +0000 Committer: Tom Barber <[email protected]> Committed: Sun Jan 10 23:10:06 2016 +0000 ---------------------------------------------------------------------- .../oodt/cas/filemgr/browser/model/CasDB.java | 3 +- .../cas/filemgr/browser/view/MainWindow.java | 1 - .../browser/view/menus/RightClickMenu.java | 8 -- .../perspective/view/impl/DefaultPropView.java | 15 +-- .../perspective/view/impl/DefaultTreeView.java | 26 ++--- .../mapping/MemoryBasedIngestMapper.java | 1 - .../catalog/repository/CatalogRepository.java | 36 +----- .../AbstractCommunicationChannelServer.java | 57 +--------- .../channel/CommunicationChannelClient.java | 31 +---- .../XmlRpcCommunicationChannelClient.java | 67 +---------- .../XmlRpcCommunicationChannelServer.java | 63 +---------- .../struct/impl/index/DataSourceIndex.java | 29 ----- .../system/impl/CatalogServiceLocal.java | 6 +- .../oodt/cas/catalog/util/QueryUtils.java | 62 +--------- .../org/apache/oodt/commons/util/JDBC_DB.java | 22 ---- .../cas/curation/service/MetadataResource.java | 4 - .../oodt/cas/filemgr/catalog/LuceneCatalog.java | 2 - .../cas/filemgr/catalog/ScienceDataCatalog.java | 9 -- .../extractors/AbstractFilemgrMetExtractor.java | 5 - .../extractors/examples/MimeTypeExtractor.java | 2 - .../org/apache/oodt/pcs/pedigree/Pedigree.java | 5 - .../apache/oodt/pcs/util/FileManagerUtils.java | 1 - .../apache/oodt/pcs/input/PGEDataHandler.java | 11 +- .../apache/oodt/profile/gui/LeafListener.java | 22 +--- .../oodt/cas/protocol/http/HttpProtocol.java | 113 +------------------ .../oodt/cas/protocol/imaps/ImapsProtocol.java | 20 ---- .../oodt/cas/pushpull/expressions/Method.java | 13 +-- .../pushpull/filerestrictions/VirtualFile.java | 2 - .../retrievalsystem/FileRetrievalSystem.java | 3 - .../processor/WorkflowProcessorHelper.java | 12 +- .../oodt/cas/workflow/util/DbStructFactory.java | 6 - 31 files changed, 46 insertions(+), 611 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/model/CasDB.java ---------------------------------------------------------------------- diff --git a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/model/CasDB.java b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/model/CasDB.java index ffb57d0..ef7109e 100644 --- a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/model/CasDB.java +++ b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/model/CasDB.java @@ -71,7 +71,7 @@ public class CasDB { types = new String[v.size()]; } catch (RepositoryManagerException e) { - // LOG.log(Level.SEVERE, e.getMessage()); + LOG.log(Level.SEVERE, e.getMessage()); } } else { @@ -142,7 +142,6 @@ public class CasDB { type = client.getProductTypeByName(productType); Vector<Product> products = (Vector<Product>) client .getProductsByProductType(type); - // for(int i=0;i<products.size();i++){ int maxVal = INT; if (products.size() < maxVal) { maxVal = products.size(); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/MainWindow.java ---------------------------------------------------------------------- diff --git a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/MainWindow.java b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/MainWindow.java index a30448e..65fd483 100644 --- a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/MainWindow.java +++ b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/MainWindow.java @@ -39,7 +39,6 @@ public class MainWindow extends JFrame { public MainWindow() { wListener = new WindowListener(this); - // db = new CasDB(); setName("CAS File Manager Browser"); setDefaultCloseOperation(EXIT_ON_CLOSE); qPane = new QueryPane(wListener); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/menus/RightClickMenu.java ---------------------------------------------------------------------- diff --git a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/menus/RightClickMenu.java b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/menus/RightClickMenu.java index 854cfb3..0c0f64c 100644 --- a/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/menus/RightClickMenu.java +++ b/app/fmbrowser/src/main/java/org/apache/oodt/cas/filemgr/browser/view/menus/RightClickMenu.java @@ -27,33 +27,25 @@ public class RightClickMenu extends JPopupMenu { private JMenuItem hideItem; private JMenuItem unhideItem; - // private JMenuItem resizeItem; - public RightClickMenu(ActionListener listener) { hideItem = new JMenuItem("Hide"); hideItem.addActionListener(listener); unhideItem = new JMenuItem("Unhide"); unhideItem.addActionListener(listener); - // resizeItem = new JMenuItem("Resize"); - // resizeItem.addActionListener(listener); this.add(hideItem); this.add(unhideItem); - // this.addSeparator(); - // this.add(resizeItem); } public void setUnhideMode() { hideItem.setEnabled(false); unhideItem.setEnabled(true); - // resizeItem.setEnabled(false); } public void setHideMode() { hideItem.setEnabled(true); unhideItem.setEnabled(false); - // resizeItem.setEnabled(true); } } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultPropView.java ---------------------------------------------------------------------- diff --git a/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultPropView.java b/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultPropView.java index 1f09521..3a98e29 100644 --- a/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultPropView.java +++ b/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultPropView.java @@ -17,7 +17,6 @@ package org.apache.oodt.cas.workflow.gui.perspective.view.impl; -//JDK imports import org.apache.commons.lang.StringUtils; import org.apache.oodt.cas.metadata.Metadata; import org.apache.oodt.cas.workflow.gui.model.ModelGraph; @@ -73,8 +72,6 @@ import javax.swing.table.AbstractTableModel; import javax.swing.table.TableCellRenderer; import javax.swing.table.TableColumn; -//Apache imports -//OODT imports /** * @@ -156,8 +153,7 @@ public class DefaultPropView extends View { .getMetadata(key + "/envReplace")))); rows.add(row); } - table = new JTable();// rows, new Vector<String>(Arrays.asList(new - // String[] { "key", "values", "envReplace" }))); + table = new JTable(); table.setModel(new AbstractTableModel() { public String getColumnName(int col) { switch (col) { @@ -234,7 +230,6 @@ public class DefaultPropView extends View { Arrays.asList(new String[] { "key", "values", "envReplace" }))); } - // table.setFillsViewportHeight(true); table.setSelectionBackground(Color.cyan); table.setAutoResizeMode(JTable.AUTO_RESIZE_OFF); TableCellRenderer cellRenderer = new TableCellRenderer() { @@ -276,7 +271,7 @@ public class DefaultPropView extends View { public void mouseClicked(MouseEvent e) { if (e.getButton() == MouseEvent.BUTTON3 && DefaultPropView.this.table.getSelectedRow() != -1) { - int row = DefaultPropView.this.table.getSelectedRow();// rowAtPoint(DefaultPropView.this.table.getMousePosition()); + int row = DefaultPropView.this.table.getSelectedRow(); String key = getKey( (String) DefaultPropView.this.table.getValueAt(row, 1), state); Metadata staticMet = state.getSelected().getModel() @@ -312,7 +307,7 @@ public class DefaultPropView extends View { override = new JMenuItem(OVERRIDE); override.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { - int row = DefaultPropView.this.table.getSelectedRow();// rowAtPoint(DefaultPropView.this.table.getMousePosition()); + int row = DefaultPropView.this.table.getSelectedRow(); String key = getKey( (String) DefaultPropView.this.table.getValueAt(row, 1), state); Metadata staticMet = state.getSelected().getModel().getStaticMetadata(); @@ -338,7 +333,7 @@ public class DefaultPropView extends View { delete.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { - int row = DefaultPropView.this.table.getSelectedRow();// rowAtPoint(DefaultPropView.this.table.getMousePosition()); + int row = DefaultPropView.this.table.getSelectedRow(); String key = getKey( (String) DefaultPropView.this.table.getValueAt(row, 1), state); Metadata staticMet = state.getSelected().getModel().getStaticMetadata(); @@ -596,8 +591,6 @@ public class DefaultPropView extends View { public void actionPerformed(ActionEvent e) { if (!graph.getModel().getModelName().equals(e.getActionCommand())) { - // GuiUtils.updateGraphModelName(getState(), - // graph.getModel().getModelId(), e.getActionCommand()); graph.getModel().setModelName(e.getActionCommand()); DefaultPropView.this.notifyListeners(); DefaultPropView.this.refreshView(state); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultTreeView.java ---------------------------------------------------------------------- diff --git a/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultTreeView.java b/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultTreeView.java index da9c7ef..35e5c20 100644 --- a/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultTreeView.java +++ b/app/weditor/src/main/java/org/apache/oodt/cas/workflow/gui/perspective/view/impl/DefaultTreeView.java @@ -17,7 +17,14 @@ package org.apache.oodt.cas.workflow.gui.perspective.view.impl; -//JDK imports +import org.apache.commons.lang.StringUtils; +import org.apache.oodt.cas.metadata.Metadata; +import org.apache.oodt.cas.workflow.gui.model.ModelGraph; +import org.apache.oodt.cas.workflow.gui.perspective.view.View; +import org.apache.oodt.cas.workflow.gui.perspective.view.ViewChange; +import org.apache.oodt.cas.workflow.gui.perspective.view.ViewState; +import org.apache.oodt.cas.workflow.gui.util.GuiUtils; + import java.awt.BorderLayout; import java.awt.Color; import java.awt.Component; @@ -28,9 +35,10 @@ import java.awt.event.ActionEvent; import java.awt.event.ActionListener; import java.awt.event.MouseEvent; import java.awt.event.MouseListener; -import java.util.concurrent.ConcurrentHashMap; import java.util.List; import java.util.Stack; +import java.util.concurrent.ConcurrentHashMap; + import javax.swing.JLabel; import javax.swing.JPanel; import javax.swing.JScrollPane; @@ -41,16 +49,6 @@ import javax.swing.tree.DefaultMutableTreeNode; import javax.swing.tree.TreeCellRenderer; import javax.swing.tree.TreePath; -//Apache imports -import org.apache.commons.lang.StringUtils; - -//OODT imports -import org.apache.oodt.cas.metadata.Metadata; -import org.apache.oodt.cas.workflow.gui.model.ModelGraph; -import org.apache.oodt.cas.workflow.gui.perspective.view.View; -import org.apache.oodt.cas.workflow.gui.perspective.view.ViewChange; -import org.apache.oodt.cas.workflow.gui.perspective.view.ViewState; -import org.apache.oodt.cas.workflow.gui.util.GuiUtils; /** * @@ -153,7 +151,6 @@ public class DefaultTreeView extends View { tree.add(this.actionsMenu); if (state.getSelected() != null) { - // System.out.println("SELECTED: " + state.getSelected()); TreePath treePath = this.getTreePath(root, state.getSelected()); if (state.getCurrentMetGroup() != null) { treePath = this.getTreePath(treePath, state); @@ -435,9 +432,6 @@ public class DefaultTreeView extends View { .getFirstPropertyValue(EXPAND_PRECONDITIONS)) || Boolean.parseBoolean(state .getFirstPropertyValue(EXPAND_POSTCONDITIONS))) { - // if (node.getUserObject() instanceof String && - // (node.getUserObject().equals("pre-conditions") || - // node.getUserObject().equals("post-conditions"))) { ModelGraph graph = state.getSelected(); if (Boolean.parseBoolean(state .getFirstPropertyValue(EXPAND_PRECONDITIONS))) { http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/mapping/MemoryBasedIngestMapper.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/mapping/MemoryBasedIngestMapper.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/mapping/MemoryBasedIngestMapper.java index 5900ca0..281c23c 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/mapping/MemoryBasedIngestMapper.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/mapping/MemoryBasedIngestMapper.java @@ -67,7 +67,6 @@ public class MemoryBasedIngestMapper implements IngestMapper { throws CatalogRepositoryException { LOG.log(Level.INFO, "Looking up CatalogService TransactionId for Catalog TransactionId '" + catalogTransactionId + "' and catalog '" + catalogId + "'"); String key = generateKey(catalogTransactionId.toString(), catalogId); -// System.out.println("LOOKING UP: " + key); TransactionIdMapping mapping = this.catalogInfoKeyMapping.get(key); if (mapping != null) { return mapping.catalogServiceTransactionId; http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/repository/CatalogRepository.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/repository/CatalogRepository.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/repository/CatalogRepository.java index 5fdc1f7..d998d5c 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/repository/CatalogRepository.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/repository/CatalogRepository.java @@ -16,15 +16,13 @@ */ package org.apache.oodt.cas.catalog.repository; -//JDK imports -import java.util.List; -import java.util.Set; - -//OODT imports import org.apache.oodt.cas.catalog.exception.CatalogRepositoryException; import org.apache.oodt.cas.catalog.system.Catalog; import org.apache.oodt.cas.catalog.util.PluginURL; +import java.util.List; +import java.util.Set; + /** * * @author bfoster @@ -36,20 +34,7 @@ import org.apache.oodt.cas.catalog.util.PluginURL; * <p> */ public interface CatalogRepository { -// -// /** -// * Verifies if the given Catalog URN has been serialized via {@link -// * serializeCatalog(Catalog)} -// * -// * @param catalogUrn -// * The URN that unique represents the Catalog -// * @return True if the Catalog has been serialized, false otherwise -// * @throws CatalogRepositoryException -// * Any Error -// */ -// public boolean isCatalogSerialized(String catalogUrn) -// throws CatalogRepositoryException; -// + /** * Serializes a given Catalog to the Repository * @@ -60,19 +45,6 @@ public interface CatalogRepository { */ void serializeCatalog(Catalog catalog) throws CatalogRepositoryException; -// -// /** -// * Loads a Catalog from the Repository -// * -// * @param catalogUrn -// * The URN that unique represents a Catalog -// * @return The Catalog represented by the given URN -// * @throws CatalogRepositoryException -// * Any Error -// */ -// public Catalog deserializeCatalog(String catalogUrn) -// throws CatalogRepositoryException; -// /** * Removes a Catalog from the Repository * http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/AbstractCommunicationChannelServer.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/AbstractCommunicationChannelServer.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/AbstractCommunicationChannelServer.java index 252ca96..873d997 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/AbstractCommunicationChannelServer.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/AbstractCommunicationChannelServer.java @@ -94,11 +94,7 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } -// -// public void setRestrictQueryPermissions(boolean restrictQueryPermissions) throws CatalogServiceException { -// this.catalogService.setRestrictQueryPermissions(restrictQueryPermissions); -// } -// + public boolean isRestrictIngestPermissions() throws CatalogServiceException { try { return this.catalogService.isRestrictIngestPermissions(); @@ -107,19 +103,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } -// -// public void setHasIngestPermissions(boolean restrictIngestPermissions) throws CatalogServiceException { -// this.catalogService.setHasIngestPermissions(restrictIngestPermissions); -// } - -// public Class<? extends TransactionId<?>> getTransactionIdClass() throws CatalogServiceException { -// return this.catalogService.getTransactionIdClass(); -// } -// -// public void setTransactionIdClass(Class<? extends TransactionId<?>> transactionIdClass) throws CatalogServiceException { -// this.catalogService.setTransactionIdClass(transactionIdClass); -// } -// public void addCatalog(Catalog catalog) throws CatalogServiceException { try { this.catalogService.addCatalog(catalog); @@ -213,16 +196,12 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio public void removeCatalog(String catalogId) throws CatalogServiceException { try { this.catalogService.removeCatalog(catalogId); - }catch (CatalogServiceException e) { + } catch (CatalogServiceException e) { LOG.log(Level.SEVERE, "Failed while removing catalog '" + catalogId + "' : " + e.getMessage(), e); throw e; } } -// public void removeCatalog(String catalogUrn, boolean preserveMapping) throws CatalogServiceException { -// this.catalogService.removeCatalog(catalogUrn, preserveMapping); -// } - public List<PluginURL> getPluginUrls() throws CatalogServiceException { try { return this.catalogService.getPluginUrls(); @@ -250,14 +229,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } - -// public Set<Catalog> getCurrentCatalogList() throws CatalogServiceException { -// return this.catalogService.getCurrentCatalogList(); -// } -// -// public Catalog getCatalog(String catalogUrn) throws CatalogServiceException { -// return this.catalogService.getCatalog(catalogUrn); -// } public Set<String> getCurrentCatalogIds() throws CatalogServiceException { try { @@ -312,14 +283,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } - -// public Page getFirstPage(QueryExpression queryExpression) throws Exception { -// return this.catalogService.getFirstPage(queryExpression); -// } -// -// public Page getFirstPage(QueryExpression queryExpression, Set<String> catalogIds) throws Exception { -// return this.catalogService.getFirstPage(queryExpression, catalogIds); -// } public Page getNextPage(Page page) throws CatalogServiceException { try { @@ -348,14 +311,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio } } -// public Page getLastPage(QueryExpression queryExpression) throws Exception { -// return this.catalogService.getLastPage(queryExpression); -// } -// -// public Page getLastPage(QueryExpression queryExpression, Set<String> catalogIds) throws Exception { -// return this.catalogService.getLastPage(queryExpression, catalogIds); -// } - public List<TransactionalMetadata> getMetadata(Page page) throws CatalogServiceException { try { return this.catalogService.getMetadata(page); @@ -382,10 +337,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } - -// public QueryPager query(QueryExpression queryExpression, boolean sortResults) throws CatalogServiceException { -// return this.catalogService.query(queryExpression, sortResults); -// } public List<TransactionalMetadata> getNextPage(QueryPager queryPager) throws CatalogServiceException { try { @@ -395,10 +346,6 @@ public abstract class AbstractCommunicationChannelServer implements Communicatio throw e; } } - -// public List<TransactionId<?>> getTransactionIdsForAllPages(QueryPager queryPager) throws CatalogServiceException { -// return this.catalogService.getTransactionIdsForAllPages(queryPager); -// } public List<TransactionalMetadata> getAllPages(QueryPager queryPager) throws CatalogServiceException { try { http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/CommunicationChannelClient.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/CommunicationChannelClient.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/CommunicationChannelClient.java index ec9361f..63f5016 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/CommunicationChannelClient.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/CommunicationChannelClient.java @@ -16,8 +16,6 @@ */ package org.apache.oodt.cas.catalog.server.channel; -//JDK imports - import org.apache.oodt.cas.catalog.exception.CatalogException; import org.apache.oodt.cas.catalog.metadata.TransactionalMetadata; import org.apache.oodt.cas.catalog.page.CatalogReceipt; @@ -38,8 +36,6 @@ import java.util.List; import java.util.Properties; import java.util.Set; -//OODT imports - /** * @author bfoster * @version $Revision$ @@ -54,17 +50,8 @@ public interface CommunicationChannelClient { boolean isRestrictQueryPermissions() throws CatalogException; -// public void setRestrictQueryPermissions(boolean restrictQueryPermissions) throws Exception; - boolean isRestrictIngestPermissions() throws CatalogException; -// public void setHasIngestPermissions(boolean restrictIngestPermissions) throws Exception; - -// public Class<? extends TransactionId<?>> getTransactionIdClass() throws Exception; -// -// public void setTransactionIdClass(Class<? extends TransactionId<?>> transactionIdClass) throws Exception; -// - void addCatalog(Catalog catalog) throws CatalogException; void replaceCatalog(Catalog catalog) throws CatalogException; @@ -88,8 +75,6 @@ public interface CommunicationChannelClient { void removeCatalog(String catalogUrn) throws CatalogException; -// public void removeCatalog(String catalogUrn, boolean preserveMapping) throws Exception; - List<PluginURL> getPluginUrls() throws CatalogException; void addPluginUrls(List<PluginURL> pluginUrls) throws CatalogException; @@ -97,10 +82,6 @@ public interface CommunicationChannelClient { URL getPluginStorageDir() throws CatalogException; void transferUrl(URL fromUrl, URL toUrl) throws CatalogException; - -// public Set<Catalog> getCurrentCatalogList() throws Exception; -// -// public Catalog getCatalog(String catalogUrn) throws Exception; Set<String> getCurrentCatalogIds() throws CatalogException; @@ -114,28 +95,18 @@ public interface CommunicationChannelClient { Properties getCalalogProperties(String catalogUrn) throws CatalogException; -// public Page getFirstPage(QueryExpression queryExpression) throws Exception; -// -// public Page getFirstPage(QueryExpression queryExpression, Set<String> catalogIds) throws Exception; - Page getNextPage(Page page) throws CatalogException; Page getPage(PageInfo pageInfo, QueryExpression queryExpression) throws CatalogException; Page getPage(PageInfo pageInfo, QueryExpression queryExpression, Set<String> catalogIds) throws CatalogException; -// public Page getLastPage(QueryExpression queryExpression) throws Exception; -// -// public Page getLastPage(QueryExpression queryExpression, Set<String> catalogIds) throws Exception; - List<TransactionalMetadata> getMetadata(Page page) throws CatalogException; QueryPager query(QueryExpression queryExpression) throws CatalogException; QueryPager query(QueryExpression queryExpression, Set<String> catalogIds) throws CatalogException; - -// public QueryPager query(QueryExpression queryExpression, boolean sortResults) throws Exception; - + List<TransactionalMetadata> getNextPage(QueryPager queryPager) throws CatalogException; List<TransactionId<?>> getTransactionIdsForAllPages(QueryPager queryPager) throws CatalogException; http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelClient.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelClient.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelClient.java index 9d9c6a8..51b27b4 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelClient.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelClient.java @@ -330,17 +330,6 @@ public class XmlRpcCommunicationChannelClient extends AbstractCommunicationChann } } -// public Catalog getCatalog(String catalogUrn) throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(catalogUrn); -// return this.serializer.deserializeObject(Catalog.class, (String) this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_getCatalog", args)); -// } - -// public CatalogRepository getCatalogRepository() -// throws CatalogException { -// return this.serializer.deserializeObject(CatalogRepository.class, (String) this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_getCatalogRepository", new Vector<Object>())); -// } - public TransactionId<?> getCatalogServiceTransactionId( TransactionId<?> catalogTransactionId, String catalogUrn) throws CatalogException { @@ -396,14 +385,6 @@ public class XmlRpcCommunicationChannelClient extends AbstractCommunicationChann } } -// public Set<Catalog> getCurrentCatalogList() throws CatalogException { -// return this.serializer.deserializeObject(Set.class, (String) this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_getCurrentCatalogList", new Vector<Object>())); -// } -// -// public IngestMapper getIngestMapper() throws CatalogException { -// return this.serializer.deserializeObject(IngestMapper.class, (String) this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_getIngestMapper", new Vector<Object>())); -// } - public List<TransactionalMetadata> getMetadataFromTransactionIdStrings( List<String> catalogServiceTransactionIdStrings) throws CatalogException { @@ -639,14 +620,7 @@ public class XmlRpcCommunicationChannelClient extends AbstractCommunicationChann throw new CatalogException("Query Failed: "+ e.getMessage(), e); } } - -// public QueryPager query(QueryExpression queryExpression, boolean sortResults) -// throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(queryExpression)); -// args.add(this.serializer.serializeObject(new Boolean(sortResults))); -// return this.serializer.deserializeObject(QueryPager.class, (String) this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_query", args)); -// } + public void removeCatalog(String catalogUrn) throws CatalogException { Vector<Object> args = new Vector<Object>(); @@ -660,45 +634,6 @@ public class XmlRpcCommunicationChannelClient extends AbstractCommunicationChann } } -// public void removeCatalog(String catalogUrn, boolean preserveMapping) -// throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(catalogUrn); -// args.add(this.serializer.serializeObject(new Boolean(preserveMapping))); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_removeCatalog", args); -// } - -// public void setCatalogRepository(CatalogRepository catalogRepository) -// throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(catalogRepository)); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_setCatalogRepository", args); -// } - -// public void setHasIngestPermissions(boolean restrictIngestPermissions) throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(new Boolean(restrictIngestPermissions))); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_setHasIngestPermissions", args); -// } - -// public void setIngestMapper(IngestMapper ingestMapper) throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(ingestMapper)); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_setIngestMapper", args); -// } - -// public void setRestrictQueryPermissions(boolean restrictQueryPermissions) throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(new Boolean(restrictQueryPermissions))); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_setRestrictQueryPermissions", args); -// } - -// public void setTransactionIdClass( -// Class<? extends TransactionId<?>> transactionIdClass) throws CatalogException { -// Vector<Object> args = new Vector<Object>(); -// args.add(this.serializer.serializeObject(transactionIdClass)); -// this.client.execute(XmlRpcCommunicationChannelServer.class.getSimpleName() + ".xmlrpc_setTransactionIdClass", args); -// } } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelServer.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelServer.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelServer.java index 2121a81..5540d44 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelServer.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/server/channel/xmlrpc/XmlRpcCommunicationChannelServer.java @@ -170,10 +170,6 @@ public class XmlRpcCommunicationChannelServer extends return this.serializer.serializeObject(this.getCalalogProperties(catalogUrn)); } -// public String xmlrpc_getCatalog(String catalogUrn) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getCatalog(catalogUrn)); -// } - public String xmlrpc_getCatalogServiceTransactionId( String catalogTransactionIdObject, String catalogUrn) throws CatalogServiceException { @@ -196,10 +192,6 @@ public class XmlRpcCommunicationChannelServer extends return this.serializer.serializeObject(this.getCurrentCatalogIds()); } -// public String xmlrpc_getCurrentCatalogList() throws CatalogServiceException { -// return this.serializer.serializeObject(this.getCurrentCatalogList()); -// } - public String xmlrpc_getMetadataFromTransactionIdStrings( String catalogServiceTransactionIdStringsObject) throws CatalogServiceException { @@ -220,15 +212,7 @@ public class XmlRpcCommunicationChannelServer extends public String xmlrpc_getProperty(String key) throws CatalogServiceException { return this.serializer.serializeObject(this.getProperty(key)); } -// -// public String xmlrpc_getTransactionIdClass() throws CatalogServiceException { -// return this.serializer.serializeObject(this.getTransactionIdClass()); -// } -// public String xmlrpc_getTransactionIdsForAllPages( -// String queryPagerObject) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getTransactionIdsForAllPages(this.serializer.deserializeObject(QueryPager.class, queryPagerObject))); -// } public String xmlrpc_ingest(String metadataObject) throws CatalogServiceException { @@ -250,15 +234,7 @@ public class XmlRpcCommunicationChannelServer extends public String xmlrpc_query(String queryExpressionObject, String catalogIdsObject) throws CatalogServiceException { return this.serializer.serializeObject(this.query(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject), this.serializer.deserializeObject(Set.class, catalogIdsObject))); } - -// public String xmlrpc_getFirstPage(String queryExpressionObject) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getFirstPage(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject))); -// } -// -// public String xmlrpc_getFirstPage(String queryExpressionObject, String catalogIdsObject) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getFirstPage(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject), this.serializer.deserializeObject(Set.class, catalogIdsObject))); -// } - + public String xmlrpc_getNextPage2(String pageObject) throws CatalogServiceException { return this.serializer.serializeObject(this.getNextPage(this.serializer.deserializeObject(Page.class, pageObject))); } @@ -270,47 +246,16 @@ public class XmlRpcCommunicationChannelServer extends public String xmlrpc_getPage(String pageInfoObject, String queryExpressionObject, String catalogIdsObject) throws CatalogServiceException { return this.serializer.serializeObject(this.getPage(this.serializer.deserializeObject(PageInfo.class, pageInfoObject), this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject), this.serializer.deserializeObject(Set.class, catalogIdsObject))); } - -// public String xmlrpc_getLastPage(String queryExpressionObject) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getLastPage(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject))); -// } -// -// public String xmlrpc_getLastPage(String queryExpressionObject, String catalogIdsObject) throws CatalogServiceException { -// return this.serializer.serializeObject(this.getLastPage(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject), this.serializer.deserializeObject(Set.class, catalogIdsObject))); -// } - + public String xmlrpc_getMetadata(String pageObject) throws CatalogServiceException { return this.serializer.serializeObject(this.getMetadata(this.serializer.deserializeObject(Page.class, pageObject))); } - -// public String xmlrpc_query(String queryExpressionObject, String sortResultsObject) throws CatalogServiceException { -// System.out.println(this.getClass().getClassLoader()); -// return this.serializer.serializeObject(this.query(this.serializer.deserializeObject(QueryExpression.class, queryExpressionObject), this.serializer.deserializeObject(Boolean.class, sortResultsObject))); -// } + public boolean xmlrpc_removeCatalog(String catalogUrn) throws CatalogServiceException { this.removeCatalog(catalogUrn); return true; } -// -// public boolean xmlrpc_removeCatalog(String catalogUrn, String preserveMappingObject) throws CatalogServiceException { -// this.removeCatalog(catalogUrn, this.serializer.deserializeObject(Boolean.class, preserveMappingObject)); -// return true; -// } -// -// public boolean xmlrpc_setHasIngestPermissions(String restrictIngestPermissionsObject) throws CatalogServiceException { -// this.setHasIngestPermissions(this.serializer.deserializeObject(Boolean.class, restrictIngestPermissionsObject)); -// return true; -// } -// -// public boolean xmlrpc_setRestrictQueryPermissions(String restrictQueryPermissionsObject) throws CatalogServiceException { -// this.setRestrictQueryPermissions(this.serializer.deserializeObject(Boolean.class, restrictQueryPermissionsObject)); -// return true; -// } - -// public boolean setTransactionIdClass(String transactionIdClassObject) throws CatalogServiceException { -// this.setTransactionIdClass(this.serializer.deserializeObject(Class.class, transactionIdClassObject)); -// return true; -// } + } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/struct/impl/index/DataSourceIndex.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/struct/impl/index/DataSourceIndex.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/struct/impl/index/DataSourceIndex.java index cc007e0..5d8b1bd 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/struct/impl/index/DataSourceIndex.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/struct/impl/index/DataSourceIndex.java @@ -16,8 +16,6 @@ */ package org.apache.oodt.cas.catalog.struct.impl.index; -//JDK imports - import org.apache.commons.lang.StringUtils; import org.apache.oodt.cas.catalog.exception.CatalogIndexException; import org.apache.oodt.cas.catalog.exception.IngestServiceException; @@ -116,33 +114,6 @@ public class DataSourceIndex implements Index, IngestService, QueryService { * {@inheritDoc} */ public List<TransactionId<?>> getPage(IndexPager indexPage) { -// Connection conn = null; -// Statement stmt = null; -// ResultSet rs = null; -// try { -// conn = this.dataSource.getConnection(); -// stmt = conn.createStatement(); -// rs = stmt.executeQuery("SELECT transaction_id,transaction_class,transaction_date FROM transactions"); -// int startLoc = pager.getPageNum() * pager.getPageSize(); -// int endLoc = startLoc + pager.getPageSize(); -// List<IngestReceipt> receipts = new Vector<IngestReceipt>(); -// for (int i = startLoc; i < endLoc && rs.next(); i++) { -// receipts.add(new IngestReceipt(((TransactionId<?>) Class.forName(rs.getString("transaction_class")).getConstructor(String.class).newInstance(rs.getString("transaction_id"))), DateUtils.toCalendar(rs.getString("transaction_date"), DateUtils.FormatType.LOCAL_FORMAT).getTime())); -// } -// return rs.next(); -// }catch (Exception e) { -// throw new CatalogIndexException("Failed to check for transaction id '" + transactionId + "' : " + e.getMessage(), e); -// }finally { -// try { -// conn.close(); -// }catch(Exception e) {} -// try { -// stmt.close(); -// }catch(Exception e) {} -// try { -// rs.close(); -// }catch(Exception e) {} -// } return null; } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/system/impl/CatalogServiceLocal.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/system/impl/CatalogServiceLocal.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/system/impl/CatalogServiceLocal.java index 0e18335..92f6455 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/system/impl/CatalogServiceLocal.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/system/impl/CatalogServiceLocal.java @@ -16,7 +16,6 @@ */ package org.apache.oodt.cas.catalog.system.impl; -//OODT imports import org.apache.oodt.cas.catalog.exception.CatalogException; import org.apache.oodt.cas.catalog.exception.CatalogServiceException; import org.apache.oodt.cas.catalog.mapping.IngestMapper; @@ -858,13 +857,11 @@ public class CatalogServiceLocal implements CatalogService { List<TransactionReceipt> indexedReceipts = new Vector<TransactionReceipt>(); for (TransactionReceipt transactionReceipt : transactionReceipts) { try { -// for (CatalogReceipt catalogReceipt : transactionReceipt.getCatalogReceipts()) { if (transactionReceipt.getTransactionId() == null) { transactionReceipt = new TransactionReceipt( this.getCatalogServiceTransactionId(transactionReceipt.getCatalogReceipts().get(0), true), transactionReceipt.getCatalogReceipts()); } -// } indexedReceipts.add(transactionReceipt); }catch(Exception e) { throw new CatalogServiceException(e.getMessage(), e); @@ -1092,8 +1089,7 @@ public class CatalogServiceLocal implements CatalogService { for (QueryExpression subQueryExpression : ((QueryLogicalGroup) queryExpression).getExpressions()) { childrenQueryResults.add(queryRecur(subQueryExpression, restrictToCatalogIds)); } - - // if (QueryLogicalGroup's operator is AND and is unbalanced or a child contains query results) + if ((((QueryLogicalGroup) queryExpression).getOperator().equals(QueryLogicalGroup.Operator.AND) && containsUnbalancedCatalogInterest(childrenQueryResults)) || containsTranactionReceipts(childrenQueryResults)) { for (QueryResult childQueryResult : childrenQueryResults) { http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/catalog/src/main/java/org/apache/oodt/cas/catalog/util/QueryUtils.java ---------------------------------------------------------------------- diff --git a/catalog/src/main/java/org/apache/oodt/cas/catalog/util/QueryUtils.java b/catalog/src/main/java/org/apache/oodt/cas/catalog/util/QueryUtils.java index b38caaa..9062ef2 100644 --- a/catalog/src/main/java/org/apache/oodt/cas/catalog/util/QueryUtils.java +++ b/catalog/src/main/java/org/apache/oodt/cas/catalog/util/QueryUtils.java @@ -16,11 +16,6 @@ */ package org.apache.oodt.cas.catalog.util; -//JDK imports -import java.util.List; -import java.util.Vector; - -//OODT imports import org.apache.oodt.cas.catalog.metadata.TransactionalMetadata; import org.apache.oodt.cas.catalog.query.QueryExpression; import org.apache.oodt.cas.catalog.query.QueryLogicalGroup; @@ -30,7 +25,8 @@ import org.apache.oodt.cas.catalog.query.parser.ParseException; import org.apache.oodt.cas.catalog.query.parser.QueryParser; import org.apache.oodt.cas.catalog.query.parser.TokenMgrError; -//OODT imports +import java.util.List; +import java.util.Vector; /** * @author bfoster @@ -91,57 +87,5 @@ public class QueryUtils { System.out.println(qe.toString()); System.out.println(simplifyQuery(qe).toString()); } - -// public static QueryExpression convertAndsToOrs(QueryExpression queryExpression) { -// if (queryExpression instanceof QueryLogicalGroup) { -// if (((QueryLogicalGroup) queryExpression).getOperator().equals(QueryLogicalGroup.Operator.AND)) { -// QueryLogicalGroup convertedQueryExpression = new QueryLogicalGroup(); -// convertedQueryExpression.setOperator(QueryLogicalGroup.Operator.OR); -// for (QueryExpression subQueryExpression : ((QueryLogicalGroup) queryExpression).getExpressions()) -// convertedQueryExpression.addExpression(new NotQueryExpression(convertAndsToOrs(subQueryExpression))); -// return new NotQueryExpression(convertedQueryExpression); -// }else { -// QueryLogicalGroup convertedQueryExpression = new QueryLogicalGroup(); -// convertedQueryExpression.setOperator(QueryLogicalGroup.Operator.OR); -// for (QueryExpression subQueryExpression : ((QueryLogicalGroup) queryExpression).getExpressions()) -// convertedQueryExpression.addExpression(convertAndsToOrs(subQueryExpression)); -// return convertedQueryExpression; -// } -// }else if (queryExpression instanceof NotQueryExpression) { -// return new NotQueryExpression(convertAndsToOrs(((NotQueryExpression) queryExpression).getQueryExpression())); -// }else { -// return queryExpression; -// } -// } -// -// public static QueryExpression reduceNots(QueryExpression queryExpression) { -// if (queryExpression instanceof NotQueryExpression) { -// NotQueryExpression notQueryExpression = (NotQueryExpression) queryExpression; -// if (notQueryExpression.getQueryExpression() instanceof QueryLogicalGroup && ((QueryLogicalGroup) notQueryExpression.getQueryExpression()).getOperator().equals(QueryLogicalGroup.Operator.OR)) { -// QueryLogicalGroup queryLogicalGroup = (QueryLogicalGroup) notQueryExpression.getQueryExpression(); -// QueryLogicalGroup newQueryLogicalGroup = new QueryLogicalGroup(); -// newQueryLogicalGroup.setOperator(QueryLogicalGroup.Operator.AND); -// for (QueryExpression subQueryExpression : queryLogicalGroup.getExpressions()) { -// if (subQueryExpression instanceof NotQueryExpression) { -// newQueryLogicalGroup.addExpression(reduceNots(((NotQueryExpression) subQueryExpression).getQueryExpression())); -// }else { -// newQueryLogicalGroup.addExpression(new NotQueryExpression(reduceNots(subQueryExpression))); -// } -// } -// return newQueryLogicalGroup; -// }else { -// return new NotQueryExpression(reduceNots(notQueryExpression.getQueryExpression())); -// } -// }else if (queryExpression instanceof QueryLogicalGroup){ -// QueryLogicalGroup queryLogicalGroup = (QueryLogicalGroup) queryExpression; -// QueryLogicalGroup newQueryLogicalGroup = new QueryLogicalGroup(); -// newQueryLogicalGroup.setOperator(queryLogicalGroup.getOperator()); -// for (QueryExpression subQueryExpression : queryLogicalGroup.getExpressions()) -// newQueryLogicalGroup.addExpression(reduceNots(subQueryExpression)); -// return newQueryLogicalGroup; -// }else { -// return queryExpression; -// } -// } - + } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/commons/src/main/java/org/apache/oodt/commons/util/JDBC_DB.java ---------------------------------------------------------------------- diff --git a/commons/src/main/java/org/apache/oodt/commons/util/JDBC_DB.java b/commons/src/main/java/org/apache/oodt/commons/util/JDBC_DB.java index cf0ee04..9bf1b35 100644 --- a/commons/src/main/java/org/apache/oodt/commons/util/JDBC_DB.java +++ b/commons/src/main/java/org/apache/oodt/commons/util/JDBC_DB.java @@ -188,8 +188,6 @@ public class JDBC_DB stmt = null; } catch (SQLException e) { System.err.println("Ignoring database close connection exception"); - //System.err.println("Ignoring exception " + e.getClass().getName() + ": " + e.getMessage()); - //LOG.log(Level.SEVERE, e.getMessage()); } } @@ -280,22 +278,13 @@ public class JDBC_DB throw new IllegalStateException("Connection got closed!"); } - - //long time0 = System.currentTimeMillis(); stmt = connect.createStatement(); - //long time = System.currentTimeMillis(); - //System.err.println("###### Creating a new statement: " + (time - time0)); - //time0 = time; if (rs!=null) { rs.close(); } rs = stmt.executeQuery(sql_command); - //time = System.currentTimeMillis(); - //System.err.println("###### Executing the query: " + (time - time0)); - - return(rs); @@ -414,17 +403,6 @@ public class JDBC_DB public String toDateStr(java.util.Date inDate) { - String outDate; -/* - outDate = Integer.toString(inDate.getDate()) + "-" + - Integer.toString(inDate.getMonth() + 1) + "-" + - Integer.toString(inDate.getYear()) + " " + - Integer.toString(inDate.getHours()) + ":" + - Integer.toString(inDate.getMinutes()) + ":" + - Integer.toString(inDate.getSeconds()); - return(outDate); -*/ - SimpleDateFormat fmt = new SimpleDateFormat("dd-MM-yyyy HH:mm:ss"); return fmt.format(inDate); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/curator/services/src/main/java/org/apache/oodt/cas/curation/service/MetadataResource.java ---------------------------------------------------------------------- diff --git a/curator/services/src/main/java/org/apache/oodt/cas/curation/service/MetadataResource.java b/curator/services/src/main/java/org/apache/oodt/cas/curation/service/MetadataResource.java index 0d2bd2e..e9e5953 100644 --- a/curator/services/src/main/java/org/apache/oodt/cas/curation/service/MetadataResource.java +++ b/curator/services/src/main/java/org/apache/oodt/cas/curation/service/MetadataResource.java @@ -133,8 +133,6 @@ public class MetadataResource extends CurationService { @QueryParam("configId") String configId, @DefaultValue("false") @QueryParam("overwrite") Boolean overwrite, @Context HttpServletRequest req, @Context HttpServletResponse res) { - - // this.sendRedirect("login.jsp", uriInfo, res); Metadata metadata; @@ -256,7 +254,6 @@ public class MetadataResource extends CurationService { @DefaultValue(FORMAT_HTML) @QueryParam("format") String format, @Context HttpServletRequest req, @Context HttpServletResponse res) { - // this.sendRedirect("login.jsp", uriInfo, res); // Call file manager to get metadata Product prod; Metadata metadata; @@ -307,7 +304,6 @@ public class MetadataResource extends CurationService { @DefaultValue(FORMAT_HTML) @QueryParam("format") String format, @Context HttpServletRequest req, @Context HttpServletResponse res) { - // this.sendRedirect("login.jsp", uriInfo, res); Metadata metadata; String[] idParts = id.split("/", 3); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/LuceneCatalog.java ---------------------------------------------------------------------- diff --git a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/LuceneCatalog.java b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/LuceneCatalog.java index d3c297a..26bb983 100644 --- a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/LuceneCatalog.java +++ b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/LuceneCatalog.java @@ -985,9 +985,7 @@ public class LuceneCatalog implements Catalog { Document doc = toDoc(cp.getProduct(), cp.getMetadata()); writer.addDocument(doc); - // take this out for now // TODO: determine a better way to optimize the index - // writer.optimize(); } catch (IOException e) { LOG.log(Level.WARNING, "Unable to index product: [" + cp.getProduct().getProductName() + "]: Message: " http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/ScienceDataCatalog.java ---------------------------------------------------------------------- diff --git a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/ScienceDataCatalog.java b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/ScienceDataCatalog.java index b91b83e..4b7a24a 100644 --- a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/ScienceDataCatalog.java +++ b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/catalog/ScienceDataCatalog.java @@ -16,7 +16,6 @@ */ package org.apache.oodt.cas.filemgr.catalog; -//JDK imports import org.apache.oodt.cas.filemgr.structs.Product; import org.apache.oodt.cas.filemgr.structs.ProductPage; import org.apache.oodt.cas.filemgr.structs.ProductType; @@ -45,8 +44,6 @@ import java.util.regex.Pattern; import javax.sql.DataSource; -//OODT imports - /** * * Provides a Catalog implementation that facilitate large-scale ingest of @@ -122,7 +119,6 @@ public class ScienceDataCatalog implements Catalog { // CGOODALE int to count how many times this thing loops int iterCount = 0; - // String loopCounterString = ""; for (String dataPoint : dataPoints) { @@ -158,8 +154,6 @@ public class ScienceDataCatalog implements Catalog { // no datasets contain seconds at this time // including this code would cause some datasets to // parse Z, into seconds - // queryBuffer.append(":"); - // queryBuffer.append(components[3].substring(13, 15)); //ss queryBuffer.append('"'); // End time queryBuffer.append(" , "); queryBuffer.append(components[4]); // Value @@ -329,7 +323,6 @@ public class ScienceDataCatalog implements Catalog { // Try to commit the query try { - // LOG.log(Level.INFO,"Query: " + query); conn = this.dataSource.getConnection(); conn.setAutoCommit(false); statement = conn.createStatement(); @@ -391,8 +384,6 @@ public class ScienceDataCatalog implements Catalog { public Metadata getMetadata(Product product) throws CatalogException { Metadata met = new Metadata(); - // met.addMetadata("StartDateTime", this.getStartDateTime(product)); - // met.addMetadata("EndDateTime", this.getEndDateTime(product)); met.addMetadata("Filename", product.getProductName()); met.addMetadata("ProductType", product.getProductType().getName()); met.addMetadata("FileLocation", "Unknown"); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/AbstractFilemgrMetExtractor.java ---------------------------------------------------------------------- diff --git a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/AbstractFilemgrMetExtractor.java b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/AbstractFilemgrMetExtractor.java index 13d71fa..d359734 100644 --- a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/AbstractFilemgrMetExtractor.java +++ b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/AbstractFilemgrMetExtractor.java @@ -91,11 +91,6 @@ public abstract class AbstractFilemgrMetExtractor implements throw new MetExtractionException("Product references undefined"); } - /* - * if (met == null || (met != null && (met.getHashtable() == null || - * (met .getHashtable() != null && met.getHashtable().keySet() .size() == - * 0)))) { throw new MetExtractionException("Metadata undefined"); } - */ } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/examples/MimeTypeExtractor.java ---------------------------------------------------------------------- diff --git a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/examples/MimeTypeExtractor.java b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/examples/MimeTypeExtractor.java index 83665f0..675de83 100644 --- a/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/examples/MimeTypeExtractor.java +++ b/filemgr/src/main/java/org/apache/oodt/cas/filemgr/metadata/extractors/examples/MimeTypeExtractor.java @@ -62,8 +62,6 @@ public class MimeTypeExtractor extends AbstractFilemgrMetExtractor { if (product.getProductStructure().equals(Product.STRUCTURE_FLAT)) { Reference prodRef = (Reference) product.getProductReferences().get( 0); - /*Reference mimeRef = new Reference(prodRef.getOrigReference(), - prodRef.getDataStoreReference(), prodRef.getFileSize());*/ extractMet.addMetadata(MIME_TYPE, prodRef.getMimeType().getName()); extractMet.addMetadata(MIME_TYPE, prodRef.getMimeType() http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pcs/core/src/main/java/org/apache/oodt/pcs/pedigree/Pedigree.java ---------------------------------------------------------------------- diff --git a/pcs/core/src/main/java/org/apache/oodt/pcs/pedigree/Pedigree.java b/pcs/core/src/main/java/org/apache/oodt/pcs/pedigree/Pedigree.java index 7f6f7b3..b3b81fd 100644 --- a/pcs/core/src/main/java/org/apache/oodt/pcs/pedigree/Pedigree.java +++ b/pcs/core/src/main/java/org/apache/oodt/pcs/pedigree/Pedigree.java @@ -108,17 +108,12 @@ public class Pedigree implements PCSMetadata, PCSConfigMetadata { PedigreeTreeNode origRoot = PedigreeTreeNode .getPedigreeTreeNodeFromProduct(orig, null); - // System.out.println("Doing pedigree: upstream: ["+upstream+"]"); Stack roots = new Stack(); roots.add(origRoot); do { PedigreeTreeNode currRoot = (PedigreeTreeNode) roots.pop(); - /* - * System.out.println("Examining root: ["+currRoot.getNodeProduct(). - * getProductName()+"]"); - */ if (upstream) { pedProds = getUpstreamPedigreedProducts(currRoot.getNodeProduct()); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pcs/core/src/main/java/org/apache/oodt/pcs/util/FileManagerUtils.java ---------------------------------------------------------------------- diff --git a/pcs/core/src/main/java/org/apache/oodt/pcs/util/FileManagerUtils.java b/pcs/core/src/main/java/org/apache/oodt/pcs/util/FileManagerUtils.java index 1219747..abfed56 100644 --- a/pcs/core/src/main/java/org/apache/oodt/pcs/util/FileManagerUtils.java +++ b/pcs/core/src/main/java/org/apache/oodt/pcs/util/FileManagerUtils.java @@ -163,7 +163,6 @@ public class FileManagerUtils implements PCSConfigMetadata { for (Object productType : productTypes) { ProductType type = (ProductType) productType; if (excludeTypeList != null && excludeTypeList.contains(type.getName())) { - // System.out.println("Skipping: [" + type.getName() + "]"); continue; } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pcs/input/src/main/java/org/apache/oodt/pcs/input/PGEDataHandler.java ---------------------------------------------------------------------- diff --git a/pcs/input/src/main/java/org/apache/oodt/pcs/input/PGEDataHandler.java b/pcs/input/src/main/java/org/apache/oodt/pcs/input/PGEDataHandler.java index eb6dd19..306cee7 100644 --- a/pcs/input/src/main/java/org/apache/oodt/pcs/input/PGEDataHandler.java +++ b/pcs/input/src/main/java/org/apache/oodt/pcs/input/PGEDataHandler.java @@ -16,13 +16,14 @@ package org.apache.oodt.pcs.input; //JDK imports -import java.util.concurrent.ConcurrentHashMap; -import java.util.Map; -import java.util.logging.Logger; import org.xml.sax.Attributes; import org.xml.sax.SAXException; import org.xml.sax.helpers.DefaultHandler; +import java.util.Map; +import java.util.concurrent.ConcurrentHashMap; +import java.util.logging.Logger; + /** * * <p> @@ -166,10 +167,6 @@ public class PGEDataHandler extends DefaultHandler implements PGEDataParseKeys { * @see org.xml.sax.helpers.DefaultHandler#characters(char[], int, int) */ public void characters(char[] ch, int start, int length) throws SAXException { - /* - * String val = new String(ch, start, length).trim(); if(!val.equals("")){ - * this.charBuf.append(val); } - */ if (isParsingScalar() || isParsingVectorElement() || isParsingMatrixElement()) { this.charBuf.append(ch, start, length); http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/profile/src/main/java/org/apache/oodt/profile/gui/LeafListener.java ---------------------------------------------------------------------- diff --git a/profile/src/main/java/org/apache/oodt/profile/gui/LeafListener.java b/profile/src/main/java/org/apache/oodt/profile/gui/LeafListener.java index 83ac3af..b3dd729 100755 --- a/profile/src/main/java/org/apache/oodt/profile/gui/LeafListener.java +++ b/profile/src/main/java/org/apache/oodt/profile/gui/LeafListener.java @@ -166,7 +166,6 @@ public class LeafListener extends MouseAdapter{ } protected void menuItem2ActionPerformed(ActionEvent evt,DefaultMutableTreeNode theTreeNode,DefaultTreeModel theModel){ - //System.out.println("Adding child"); //only add child if it's one of the things that should have children String treeNodeName = (String)theTreeNode.getUserObject(); @@ -185,7 +184,6 @@ public class LeafListener extends MouseAdapter{ protected void menuItem1ActionPerformed(ActionEvent evt,DefaultMutableTreeNode theTreeNode,DefaultTreeModel theModel){ - //System.out.println("Adding child"); //only add child if it's one of the things that should have children String treeNodeName = (String)theTreeNode.getUserObject(); @@ -215,20 +213,13 @@ public class LeafListener extends MouseAdapter{ public void mousePressed(MouseEvent e) { - //System.out.println("In Mouse Pressed event "); int selectedRow = tree.getRowForLocation(e.getX(), e.getY()); TreePath selectedPath = tree.getPathForLocation(e.getX(), e.getY()); if(selectedRow != -1) { DefaultMutableTreeNode tn //get end of current path = (DefaultMutableTreeNode)(selectedPath.getLastPathComponent()); - // if (tn.isLeaf()){ //we need leaf only - //write your required process for tn here - //for instance: popupMenu.show( ..... ); - //below is a dummy process - //String str = (String)(tn.getUserObject()); - // System.out.println(str); - + JMenuItem menuItem1 = new JMenuItem("Add"); JMenuItem menuItem2 = new JMenuItem("Edit"); @@ -247,21 +238,13 @@ public class LeafListener extends MouseAdapter{ public void mouseReleased(MouseEvent e) { - //System.out.println("In Mouse Pressed event "); int selectedRow = tree.getRowForLocation(e.getX(), e.getY()); TreePath selectedPath = tree.getPathForLocation(e.getX(), e.getY()); if(selectedRow != -1) { DefaultMutableTreeNode tn //get end of current path = (DefaultMutableTreeNode)(selectedPath.getLastPathComponent()); - // if (tn.isLeaf()){ //we need leaf only - //write your required process for tn here - //for instance: popupMenu.show( ..... ); - //below is a dummy process - //String str = (String)(tn.getUserObject()); - // System.out.println(str); - - + JMenuItem menuItem1 = new JMenuItem("Add"); JMenuItem menuItem2 = new JMenuItem("Edit"); @@ -292,7 +275,6 @@ public class LeafListener extends MouseAdapter{ } public void actionPerformed(ActionEvent evt) { - //System.out.println("Caught click"); if(type.equals("ADD")){ theLeafListener.menuItem1ActionPerformed(evt,myTreeNode,myTreeModel); } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/protocol/http/src/main/java/org/apache/oodt/cas/protocol/http/HttpProtocol.java ---------------------------------------------------------------------- diff --git a/protocol/http/src/main/java/org/apache/oodt/cas/protocol/http/HttpProtocol.java b/protocol/http/src/main/java/org/apache/oodt/cas/protocol/http/HttpProtocol.java index fd1f86c..dc0d6a8 100644 --- a/protocol/http/src/main/java/org/apache/oodt/cas/protocol/http/HttpProtocol.java +++ b/protocol/http/src/main/java/org/apache/oodt/cas/protocol/http/HttpProtocol.java @@ -16,7 +16,6 @@ */ package org.apache.oodt.cas.protocol.http; -//OODT imports import org.apache.oodt.cas.protocol.Protocol; import org.apache.oodt.cas.protocol.ProtocolFile; import org.apache.oodt.cas.protocol.auth.Authentication; @@ -63,11 +62,11 @@ public class HttpProtocol implements Protocol { public void cd(ProtocolFile file) throws ProtocolException { try { HttpFile httpFile; - if (!(file instanceof HttpFile)) { - URL link = HttpUtils.resolveUri(currentFile.getLink().toURI(), file.getPath()).toURL(); - httpFile = new HttpFile(link.getPath(), file.isDir(), link); - } else { + if (file instanceof HttpFile) { httpFile = (HttpFile) file; + } else { + URL link = HttpUtils.resolveUri(currentFile.getLink().toURI(), file.getPath()).toURL(); + httpFile = new HttpFile(link.getPath(), file.isDir(), link); } if (!HttpUtils @@ -216,112 +215,8 @@ public class HttpProtocol implements Protocol { return children; } -// public static String findLinkInATag(String aTag) { -// // find 'href' attribute -// String find = aTag.substring(aTag.indexOf("href") + 4); -// // USE STRICT FINDING FIRST -// // (['\"])\s*?[(http)(./)(..)/#].+?\\1 -// // finds link between ' or ", which starts with one of -// // the following: http, ./, .., /, # -// // these starting possibilities can then be followed any -// // number of characters until the corresponding -// // ' or " is reached. -// String patternRegExp = "(['\"])\\s*?[\\(http\\)\\(\\./\\)\\(\\.\\.\\)/#].+?\\1"; -// Pattern linkPattern = Pattern.compile(patternRegExp); -// Matcher linkMatch = linkPattern.matcher(find); -// if (linkMatch.find()) -// find = find.substring(linkMatch.start() + 1, linkMatch.end() - 1); -// else { -// // RELAX FINDING SOME -// patternRegExp = "(['\"])\\s*?[^./].+?\\1"; -// linkPattern = Pattern.compile(patternRegExp); -// linkMatch = linkPattern.matcher(find); -// if (linkMatch.find()) -// find = find.substring(linkMatch.start() + 1, linkMatch.end() - 1); -// else { -// // EXTREMELY RELAX FINDING -// patternRegExp = "[^\"='/>\\s]+?[^\\s>\"']*?"; -// linkPattern = Pattern.compile(patternRegExp); -// linkMatch = linkPattern.matcher(find); -// if (linkMatch.find()) -// find = find.substring(linkMatch.start(), linkMatch.end()); -// else { -// return null; -// } -// } -// } -// return find; -// } -// -// public static String createLinkFromHref(HttpFile parent, String href) { -// if (!href.startsWith("http")) { -// String link = parent.getLink().toExternalForm(); -// if (href.startsWith("..")) { -// int index = link.substring(0, link.lastIndexOf("/")).lastIndexOf("/"); -// href = (index < 7) ? link + href.substring(2) : link.substring(0, link -// .substring(0, link.lastIndexOf("/")).lastIndexOf("/")) -// + href.substring(2); -// } else if (href.startsWith("./")) { -// int index = link.lastIndexOf("/"); -// href = (index < 7) ? link + href.substring(1) : link -// .substring(0, index) -// + href.substring(1); -// } else if (href.startsWith("/")) { -// URL url = parent.getLink(); -// href = url.getProtocol() + "://" + url.getHost() + href; -// } else { -// // find the last / in current link -// int index = link.lastIndexOf("/"); -// // (index < 7) checks if in the current link, "/" only exists -// // in the protocol section of link (i.e. http://jpl.nasa.gov) -// href = (index < 7) ? link + "/" + href : link.substring(0, index) + "/" -// + href; -// } -// } -// -// // remove "/" at end of link -// if (href.endsWith("/")) -// href = href.substring(0, href.length() - 1); -// href = href.trim(); -// -// return href; -// } -// -// public ProtocolFile getProtocolFileFor(String path, boolean isDir) -// throws ProtocolException { -// try { -// StringTokenizer st = new StringTokenizer(path, "/ "); -// HttpFile curPath = this.parentFile; -// // System.out.println(parentPath); -// if (st.hasMoreTokens()) { -// do { -// String token = st.nextToken(); -// List<HttpFile> children = this.parseLink(curPath); -// for (HttpFile pFile : children) { -// if (pFile.getName().equals(token)) { -// // System.out.println("token " + token + " " + -// // pFile); -// curPath = pFile; -// continue; -// } -// } -// } while (st.hasMoreTokens()); -// if (curPath.equals(this.parentFile)) -// return new HttpFile(path, isDir, new URL("http://"; -// + this.getSite().getHost() + path), curPath); -// } -// return curPath; -// } catch (Exception e) { -// throw new ProtocolException("Failed to get ProtocolPath for " + path); -// } -// } - public void delete(ProtocolFile file) {} -// private URL getSite() { -// return currentURL; -// } - public static void main(String[] args) throws Exception { String urlString = null, downloadToDir = null; for (int i = 0; i < args.length; i++) { http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/protocol/imaps/src/main/java/org/apache/oodt/cas/protocol/imaps/ImapsProtocol.java ---------------------------------------------------------------------- diff --git a/protocol/imaps/src/main/java/org/apache/oodt/cas/protocol/imaps/ImapsProtocol.java b/protocol/imaps/src/main/java/org/apache/oodt/cas/protocol/imaps/ImapsProtocol.java index 05b0824..ce47398 100644 --- a/protocol/imaps/src/main/java/org/apache/oodt/cas/protocol/imaps/ImapsProtocol.java +++ b/protocol/imaps/src/main/java/org/apache/oodt/cas/protocol/imaps/ImapsProtocol.java @@ -53,10 +53,6 @@ import javax.mail.Part; import javax.mail.Session; import javax.mail.Store; -//Javamail imports -//APACHE imports -//OODT imports -//TIKA imports /** * IMAP Secure {@link Protocol} implementation @@ -133,17 +129,6 @@ public class ImapsProtocol implements Protocol { decrementConnections(); if (connectCalls <= 0) { try { -// if (!currentFolder.isOpen()) { -// try { -// currentFolder.open(Folder.READ_WRITE); -// } catch (Exception e) { -// try { -// currentFolder.open(Folder.READ_ONLY); -// } catch (Exception e2) { -// } -// } -// } -// currentFolder.close(true); store.close(); } catch (Exception e) { throw new ProtocolException("Failed to close connection : " + e.getMessage(), e); @@ -171,7 +156,6 @@ public class ImapsProtocol implements Protocol { for (Message message : messages) { if (this.getMessageName(message).equals(fromFile.getName())) { writeMessageToLocalFile(message, toFile); - // message.setFlag(Flags.Flag.DELETED, true); break; } } @@ -225,9 +209,6 @@ public class ImapsProtocol implements Protocol { } public List<ProtocolFile> ls() throws ProtocolException { - // if (changedDir) { - // System.out.println("Refreshed LS"); - // currentFilesForCurrentFolder = new LinkedList<ProtocolFile>(); LinkedList<ProtocolFile> currentFilesForCurrentFolder = new LinkedList<ProtocolFile>(); try { openFolder(currentFolder); @@ -302,7 +283,6 @@ public class ImapsProtocol implements Protocol { Header header = (Header) headers.nextElement(); if (header.getName().toLowerCase().equals("message-id")) { String stringHeader = header.getValue(); - // System.out.println(stringHeader); stringHeader = stringHeader.replace("<", ""); return stringHeader.substring(0, stringHeader.indexOf("@")); } http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pushpull/src/main/java/org/apache/oodt/cas/pushpull/expressions/Method.java ---------------------------------------------------------------------- diff --git a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/expressions/Method.java b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/expressions/Method.java index ed1991c..d61d21b 100644 --- a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/expressions/Method.java +++ b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/expressions/Method.java @@ -18,8 +18,6 @@ package org.apache.oodt.cas.pushpull.expressions; -//OODT imports - import org.apache.oodt.cas.pushpull.exceptions.MethodException; import java.util.LinkedList; @@ -27,8 +25,6 @@ import java.util.Stack; import java.util.logging.Level; import java.util.logging.Logger; -//JDK imports - /** * * @author bfoster @@ -138,7 +134,6 @@ public class Method { output.addLast(args.get(argNames.indexOf(variable .toString()))); } - // System.out.println(output); break; case '#': StringBuilder variableIntString = new StringBuilder(""); @@ -160,10 +155,10 @@ public class Method { int l = i + 1; for (; l < infixArray.length; l++) { char ch = infixArray[l]; - if (ch != '"') { - variableString.append(ch); - } else { + if (ch == '"') { break; + } else { + variableString.append(ch); } } output @@ -175,14 +170,12 @@ public class Method { case '-': case '/': case '*': - // System.out.println("operators"); while (!stack.empty() && hasHigherPrecedence(stack.peek().toString() .charAt(0), c)) { output.addLast(stack.pop()); } stack.push(new Operator(c + "")); - // System.out.println("Stack: " + stack); break; case ')': while (!stack.empty()) { http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pushpull/src/main/java/org/apache/oodt/cas/pushpull/filerestrictions/VirtualFile.java ---------------------------------------------------------------------- diff --git a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/filerestrictions/VirtualFile.java b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/filerestrictions/VirtualFile.java index ce22854..ae16686 100644 --- a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/filerestrictions/VirtualFile.java +++ b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/filerestrictions/VirtualFile.java @@ -18,7 +18,6 @@ package org.apache.oodt.cas.pushpull.filerestrictions; -//JDK imports import java.util.LinkedList; import java.util.StringTokenizer; import java.util.regex.Pattern; @@ -165,7 +164,6 @@ public class VirtualFile { public VirtualFile getChild(String regExp, boolean isDirectory) { for (VirtualFile vf : children) { - // System.out.println("GETCHILD: " + regExp + " " + vf.regExp); if ((regExp.equals(vf.regExp) || Pattern.matches(vf.regExp, regExp)) && vf.isDir == isDirectory) { return vf; http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/pushpull/src/main/java/org/apache/oodt/cas/pushpull/retrievalsystem/FileRetrievalSystem.java ---------------------------------------------------------------------- diff --git a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/retrievalsystem/FileRetrievalSystem.java b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/retrievalsystem/FileRetrievalSystem.java index 5c211ed..6088b49 100644 --- a/pushpull/src/main/java/org/apache/oodt/cas/pushpull/retrievalsystem/FileRetrievalSystem.java +++ b/pushpull/src/main/java/org/apache/oodt/cas/pushpull/retrievalsystem/FileRetrievalSystem.java @@ -18,7 +18,6 @@ package org.apache.oodt.cas.pushpull.retrievalsystem; -//OODT imports import org.apache.oodt.cas.pushpull.config.Config; import org.apache.oodt.cas.pushpull.config.SiteInfo; import org.apache.oodt.cas.pushpull.exceptions.AlreadyInDatabaseException; @@ -44,7 +43,6 @@ import org.apache.oodt.cas.metadata.util.MimeTypeUtils; import java.io.File; import java.io.FileFilter; import java.io.IOException; -import java.net.MalformedURLException; import java.util.HashSet; import java.util.LinkedList; import java.util.List; @@ -961,7 +959,6 @@ public class FileRetrievalSystem { for (Protocol session : avaliableSessions) { protocolHandler.disconnect(session); } - // sessions.clear(); avaliableSessions.clear(); numberOfSessions = 0; return true; http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/workflow/src/main/java/org/apache/oodt/cas/workflow/engine/processor/WorkflowProcessorHelper.java ---------------------------------------------------------------------- diff --git a/workflow/src/main/java/org/apache/oodt/cas/workflow/engine/processor/WorkflowProcessorHelper.java b/workflow/src/main/java/org/apache/oodt/cas/workflow/engine/processor/WorkflowProcessorHelper.java index ceecc13..ae42dc4 100755 --- a/workflow/src/main/java/org/apache/oodt/cas/workflow/engine/processor/WorkflowProcessorHelper.java +++ b/workflow/src/main/java/org/apache/oodt/cas/workflow/engine/processor/WorkflowProcessorHelper.java @@ -16,7 +16,6 @@ */ package org.apache.oodt.cas.workflow.engine.processor; -//OODT imports import org.apache.commons.lang.StringUtils; import org.apache.oodt.cas.metadata.Metadata; import org.apache.oodt.cas.workflow.lifecycle.WorkflowLifecycle; @@ -33,9 +32,6 @@ import java.util.List; import java.util.Map; import java.util.Vector; -//JDK imports -//APACHE imports - /** * * Utilities for working with WorkflowProcessors and WorkflowModels. @@ -75,11 +71,8 @@ public class WorkflowProcessorHelper { + "execution = '" + skeleton.getWorkflowInstance().getParentChildWorkflow() .getGraph().getExecutionType() + "', state = '" - + skeleton.getWorkflowInstance().getState().getName() + "']");// , - // properties - // = - // " + processor.getStaticMetadata().asHashtable() + "]"); - if (skeleton.getPreConditions() != null) { + + skeleton.getWorkflowInstance().getState().getName() + "']"); + if (skeleton.getPreConditions() != null) { stringModel.append(indent).append("{PreCond:").append(indent).append(" ") .append(toString(skeleton.getPreConditions(), indent + " ")).append("}"); } @@ -163,7 +156,6 @@ public class WorkflowProcessorHelper { WorkflowLifecycle wLifecycle = getLifecycle(model); // FIXME: I'm not sure what these excused processor Ids are. I didn't seem // need them in the PackagedWorkflowRepository, so not sure what they do. - // wp.setExcusedSubProcessorIds(model.getGraph().getExcusedSubProcessorIds()); wp.getWorkflowInstance().setId(instanceId); if (model.getPreConditions() != null) { wp.setPreConditions(buildProcessor(instanceId, model, http://git-wip-us.apache.org/repos/asf/oodt/blob/0e3305c0/workflow/src/main/java/org/apache/oodt/cas/workflow/util/DbStructFactory.java ---------------------------------------------------------------------- diff --git a/workflow/src/main/java/org/apache/oodt/cas/workflow/util/DbStructFactory.java b/workflow/src/main/java/org/apache/oodt/cas/workflow/util/DbStructFactory.java index 123afb0..4842813 100644 --- a/workflow/src/main/java/org/apache/oodt/cas/workflow/util/DbStructFactory.java +++ b/workflow/src/main/java/org/apache/oodt/cas/workflow/util/DbStructFactory.java @@ -90,9 +90,6 @@ public final class DbStructFactory { task.setTaskInstanceClassName(taskClassName); task.setTaskId(String.valueOf(rs.getInt("workflow_task_id"))); task.setTaskName(rs.getString("workflow_task_name")); - /*if (setOrder) { - task.setOrder(rs.getInt("task_order")); - }*/ return task; } else { return null; @@ -112,9 +109,6 @@ public final class DbStructFactory { condition.setConditionName(rs.getString("workflow_condition_name")); condition.setTimeoutSeconds(rs.getLong("workflow_condition_timeout")); condition.setOptional(rs.getBoolean("workflow_condition_optional")); - /*if (setOrder) { - condition.setOrder(rs.getInt("condition_order")); - }*/ return condition; } else { return null;
