Merge master into development AvroRPC branch.
Project: http://git-wip-us.apache.org/repos/asf/oodt/repo Commit: http://git-wip-us.apache.org/repos/asf/oodt/commit/423444cb Tree: http://git-wip-us.apache.org/repos/asf/oodt/tree/423444cb Diff: http://git-wip-us.apache.org/repos/asf/oodt/diff/423444cb Branch: refs/heads/master Commit: 423444cb9147f21f211a45e20a5fb74203d88666 Parents: e43c6c0 871803a Author: Chris Mattmann <[email protected]> Authored: Sat Sep 2 08:34:57 2017 -0700 Committer: Chris Mattmann <[email protected]> Committed: Sat Sep 2 08:34:57 2017 -0700 ---------------------------------------------------------------------- 26.patch | 3506 ------------------ CHANGES.txt | 45 +- CHANGES.txt.orig | 1189 ------ KEYS | 39 + README.md | 6 +- agility/oodt/conf/fm.conf | 43 + agility/oodt/conf/setclasspath.sh | 17 + agility/oodt/filemgr.py | 554 +++ agility/oodt/metadata.py | 29 + agility/oodt/workflow.py | 134 + agility/setup.py | 2 +- app/fmbrowser/pom.xml | 81 - app/fmbrowser/src/main/bin/filemgr-browser | 37 - 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webapp/fmprod/src/main/dtd/query.dtd | 100 + .../cas/product/data/DataDeliveryServlet.java | 16 +- .../oodt/cas/product/rss/RSSProductServlet.java | 5 + .../oodt/product/HttpRedirectException.java | 40 + .../oodt/product/LargeProductQueryHandler.java | 57 + .../apache/oodt/product/ProductException.java | 62 + .../org/apache/oodt/product/QueryHandler.java | 38 + .../java/org/apache/oodt/product/Retriever.java | 46 + .../handlers/ofsn/AbstractCrawlLister.java | 116 + .../ofsn/DirListNonRecursiveHandler.java | 60 + .../handlers/ofsn/DirListRecursiveHandler.java | 63 + .../ofsn/FileListNonRecursiveHandler.java | 56 + .../handlers/ofsn/FileListRecursiveHandler.java | 55 + .../product/handlers/ofsn/MD5GetHandler.java | 143 + .../product/handlers/ofsn/OFSNFileHandler.java | 265 ++ .../ofsn/OFSNFileHandlerConfiguration.java | 131 + .../OFSNFileHandlerConfigurationReader.java | 93 + .../product/handlers/ofsn/OFSNGetHandler.java | 73 + .../handlers/ofsn/OFSNHandlerConfig.java | 121 + .../product/handlers/ofsn/OFSNListHandler.java | 61 + .../handlers/ofsn/RawSizeListHandler.java | 60 + .../handlers/ofsn/SingleFileListHandler.java | 64 + .../handlers/ofsn/SingleZipFileListHandler.java | 83 + .../handlers/ofsn/StdOFSNGetHandler.java | 112 + .../product/handlers/ofsn/URLGetHandler.java | 252 ++ .../handlers/ofsn/metadata/OFSNMetKeys.java | 41 + .../ofsn/metadata/OFSNXMLConfigMetKeys.java | 55 + .../handlers/ofsn/metadata/OFSNXMLMetKeys.java | 43 + .../handlers/ofsn/metadata/OODTMetKeys.java | 31 + .../handlers/ofsn/metadata/XMLQueryMetKeys.java | 32 + .../handlers/ofsn/util/OFSNObjectFactory.java | 112 + .../product/handlers/ofsn/util/OFSNUtils.java | 197 + .../apache/oodt/xmlquery/ByteArrayCodec.java | 63 + .../xmlquery/ChunkedProductInputStream.java | 215 ++ .../java/org/apache/oodt/xmlquery/Codec.java | 85 + .../org/apache/oodt/xmlquery/CodecFactory.java | 60 + .../oodt/xmlquery/CompressedObjectCodec.java | 110 + .../oodt/xmlquery/CompressedStringCodec.java | 91 + 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bytes .../src/site/resources/images/edm-query.jpg | Bin 0 -> 57650 bytes .../src/site/resources/images/grid-product.jpg | Bin 0 -> 55049 bytes .../src/site/resources/images/large-stack.png | Bin 0 -> 41424 bytes .../src/site/resources/images/large-stack.psd | Bin 0 -> 282874 bytes .../src/site/resources/images/results.png | Bin 0 -> 53580 bytes .../src/site/resources/images/results.psd | Bin 0 -> 275480 bytes .../src/site/resources/images/small-stack.png | Bin 0 -> 12368 bytes .../src/site/resources/images/small-stack.psd | Bin 0 -> 89725 bytes .../src/site/resources/images/xmlquery.png | Bin 0 -> 85734 bytes .../src/site/resources/images/xmlquery.psd | Bin 0 -> 352069 bytes webapp/fmprod/src/site/site.xml | 33 + webapp/fmprod/src/site/xdoc/disquery/index.xml | 106 + webapp/fmprod/src/site/xdoc/servlet/index.xml | 640 ++++ webapp/fmprod/src/site/xdoc/tutorial/index.xml | 659 ++++ webapp/fmprod/src/site/xdoc/tutorials/index.xml | 36 + .../fmprod/src/site/xdoc/tutorials/lh/index.xml | 718 ++++ .../fmprod/src/site/xdoc/tutorials/ps/index.xml | 481 +++ .../fmprod/src/site/xdoc/tutorials/qh/index.xml | 704 ++++ .../apache/oodt/xmlquery/CodecFactoryTest.java | 61 + .../org/apache/oodt/xmlquery/CodecTest.java | 77 + .../xmlquery/CompressedObjectCodecTest.java | 42 + .../xmlquery/CompressedStringCodecTest.java | 37 + .../oodt/xmlquery/EmptyByteArrayCodecTest.java | 51 + .../org/apache/oodt/xmlquery/HeaderTest.java | 142 + .../apache/oodt/xmlquery/ObjectCodecTest.java | 42 + .../apache/oodt/xmlquery/QueryElementTest.java | 93 + .../org/apache/oodt/xmlquery/ResultTest.java | 166 + .../apache/oodt/xmlquery/StringCodecTest.java | 37 + .../org/apache/oodt/xmlquery/XMLQueryTest.java | 225 ++ .../handlers/ofsn/util/OFSNUtilsTest.java | 59 + .../xmlquery/ChunkedProductInputStreamTest.java | 170 + .../apache/oodt/xmlquery/LargeResultTest.java | 54 + webapp/wmonitor/pom.xml | 4 +- webapp/wmservices/pom.xml | 90 + .../cas/wmservices/client/WmServicesClient.java | 132 + 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.../oodt/cas/workflow/structs/TaskJobInput.java | 37 + .../workflow/system/XmlRpcWorkflowManager.java | 42 +- .../system/XmlRpcWorkflowManagerClient.java | 6 + .../main/python/xmlrpc-wrapper/oodt_metadata.py | 29 - .../xmlrpc-wrapper/oodt_workflow_xmlrpc.py | 134 - .../TestAsynchronousLocalEngineRunner.java | 35 +- .../TestLuceneWorkflowInstanceRepository.java | 19 + .../system/TestXmlRpcWorkflowManagerClient.java | 72 +- .../TestDistributedXmlRpcWorkflowManager.java | 136 + .../config/distributed/config-publisher.xml | 56 + .../config/distributed/workflow.properties | 87 + xmlps/.gitignore | 1 - xmlps/pom.xml | 146 - xmlps/src/main/conf/example-ps.xml | 71 - xmlps/src/main/conf/example.db.properties | 21 - .../oodt/xmlps/exceptions/XmlpsException.java | 27 - .../oodt/xmlps/mapping/DatabaseTable.java | 118 - .../oodt/xmlps/mapping/DatabaseTableGroup.java | 82 - .../apache/oodt/xmlps/mapping/FieldScope.java | 35 - .../apache/oodt/xmlps/mapping/FieldType.java | 35 - 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33 - .../apache/oodt/xmlps/queryparser/Literal.java | 39 - .../oodt/xmlps/queryparser/LogOpExpression.java | 79 - .../oodt/xmlps/queryparser/OrExpression.java | 30 - .../oodt/xmlps/queryparser/ParseConstants.java | 65 - .../oodt/xmlps/queryparser/RelOpExpression.java | 75 - .../oodt/xmlps/queryparser/WildcardLiteral.java | 48 - .../apache/oodt/xmlps/structs/CDEResult.java | 181 - .../xmlps/structs/CDEResultInputStream.java | 121 - .../org/apache/oodt/xmlps/structs/CDERow.java | 70 - .../org/apache/oodt/xmlps/structs/CDEValue.java | 74 - .../xmlps/util/GenericCDEObjectFactory.java | 70 - .../apache/oodt/xmlps/util/XMLQueryHelper.java | 38 - .../apache/oodt/xmlps/util/XMLQueryKeys.java | 30 - .../oodt/xmlps/mapping/TestMappingReader.java | 165 - .../xmlps/product/TestXMLPSProductHandler.java | 182 - .../xmlps/profile/TestXMLPSProfileHandler.java | 71 - .../queryparser/TestHandlerQueryParser.java | 111 - .../oodt/xmlps/structs/TestCDEResult.java | 122 - .../xmlps/structs/TestCDEResultInputStream.java | 137 - xmlps/src/test/resources/loging.properties | 34 - xmlps/src/test/resources/test-ps.xml | 120 - .../test/resources/test-required-tables-ps.xml | 71 - .../test/resources/test-same-col-name-ps.xml | 63 - xmlquery/.gitignore | 1 - xmlquery/oodt-xmlquery.iml.orig | 41 - xmlquery/oodt-xmlquery.iml.rej | 66 - xmlquery/pom.xml | 128 - xmlquery/src/main/conf/mime.properties | 407 -- xmlquery/src/main/dtd/query.dtd | 100 - .../oodt/product/HttpRedirectException.java | 40 - .../apache/oodt/product/ProductException.java | 62 - .../java/org/apache/oodt/product/Retriever.java | 46 - .../apache/oodt/xmlquery/ByteArrayCodec.java | 63 - .../java/org/apache/oodt/xmlquery/Codec.java | 85 - .../org/apache/oodt/xmlquery/CodecFactory.java | 60 - .../oodt/xmlquery/CompressedObjectCodec.java | 110 - .../oodt/xmlquery/CompressedStringCodec.java | 91 - .../java/org/apache/oodt/xmlquery/Header.java | 211 -- .../org/apache/oodt/xmlquery/ObjectCodec.java | 106 - .../org/apache/oodt/xmlquery/QueryElement.java | 148 - .../apache/oodt/xmlquery/QueryException.java | 37 - .../org/apache/oodt/xmlquery/QueryHeader.java | 304 -- .../org/apache/oodt/xmlquery/QueryResult.java | 151 - .../java/org/apache/oodt/xmlquery/Result.java | 447 --- .../java/org/apache/oodt/xmlquery/Results.java | 60 - .../org/apache/oodt/xmlquery/Statistic.java | 155 - .../org/apache/oodt/xmlquery/StringCodec.java | 51 - .../oodt/xmlquery/UnsupportedMimeTypeCodec.java | 44 - .../java/org/apache/oodt/xmlquery/XMLQuery.java | 981 ----- .../xmlquery/activity/QueryConstructed.java | 23 - .../oodt/xmlquery/activity/ResultsReceived.java | 23 - .../java/org/apache/oodt/xmlquery/package.html | 26 - .../src/site/resources/images/edm-query.jpg | Bin 57650 -> 0 bytes .../src/site/resources/images/large-stack.png | Bin 41424 -> 0 bytes .../src/site/resources/images/large-stack.psd | Bin 282874 -> 0 bytes xmlquery/src/site/resources/images/results.png | Bin 53580 -> 0 bytes xmlquery/src/site/resources/images/results.psd | Bin 275480 -> 0 bytes .../src/site/resources/images/small-stack.png | Bin 12368 -> 0 bytes .../src/site/resources/images/small-stack.psd | Bin 89725 -> 0 bytes xmlquery/src/site/resources/images/xmlquery.png | Bin 85734 -> 0 bytes xmlquery/src/site/resources/images/xmlquery.psd | Bin 352069 -> 0 bytes xmlquery/src/site/site.xml | 33 - xmlquery/src/site/xdoc/disquery/index.xml | 106 - xmlquery/src/site/xdoc/servlet/index.xml | 640 ---- xmlquery/src/site/xdoc/tutorial/index.xml | 659 ---- .../apache/oodt/xmlquery/CodecFactoryTest.java | 61 - .../org/apache/oodt/xmlquery/CodecTest.java | 77 - .../xmlquery/CompressedObjectCodecTest.java | 42 - .../xmlquery/CompressedStringCodecTest.java | 37 - .../oodt/xmlquery/EmptyByteArrayCodecTest.java | 51 - .../org/apache/oodt/xmlquery/HeaderTest.java | 142 - .../apache/oodt/xmlquery/ObjectCodecTest.java | 42 - .../apache/oodt/xmlquery/QueryElementTest.java | 93 - .../org/apache/oodt/xmlquery/ResultTest.java | 166 - .../apache/oodt/xmlquery/StringCodecTest.java | 37 - .../org/apache/oodt/xmlquery/XMLQueryTest.java | 225 -- 1163 files changed, 21456 insertions(+), 119210 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/oodt/blob/423444cb/CHANGES.txt ---------------------------------------------------------------------- diff --cc CHANGES.txt index ed72a94,a688c31..5abaf3a --- a/CHANGES.txt +++ b/CHANGES.txt @@@ -1,7 -1,49 +1,50 @@@ Apache OODT Change Log ====================== + - Release 1.1 - Current Development + Release 1.2 - 08/14/2017 + + * OODT-955 Fix numhits error in Lucene Catalog + * OODT-956 Add connection checks to components + + Release 1.1 - 07/18/2017 + + *** NOTE: A change was introduced in this version that causes a forced upgrade to your + Lucene Workflow Instance repository catalog. If you are using Lucene in the workflow manager, + the best bet is to blow away your old workflow instance catalog, and then allow it to be + rebuilt automatically. You can detect if you are affected by this issue if you see a message + akin to the below. + Jul 19, 2017 10:45:02 AM org.apache.oodt.cas.workflow.instrepo.LuceneWorkflowInstanceRepository addWorkflowInstanceToCatalog + WARNING: Unable to index workflow instance: [d8dad567-6c90-11e7-9e4e-7574e3a12106]: Message: Format version is not supported + (resource BufferedChecksumIndexInput(MMapIndexInput(path="/project/oodt/dev/jedi/data/workflow/slothrop/segments"))): -1 (needs + to be between 1071082519 and 1071082519). This version of Lucene only supports indexes created with release 5.0 and later. + java.lang.NullPointerException + **** + + * OODT-954 CAS-PGE FileManagerFileStager has NPE b/c it does not set Product Structure (mattmann) + + * OODT-526 Add base functionality in Curator for Task List persistence (mjoyce, mattmann) + + * OODT-525 Export IngestTaskList from Curator (mjoyce, mattmann) + + * OODT-304 Add a Getter method to get the file handler configuration (Michael Cayanan via mattmann) + + * OODT-877 Fix 2 failures in o.a.o.commons.util.XMLTest on Windows 2008 Server (lewismc, mattmann) + + * OODT-305 Make the Resource Manager manage different queues of jobs independently (resneck, mattmann) + + * OODT-753 Move FM and WM Python APIs into "agility" component (kelly, mattmann) + + * OODT-563 Task editing and Workflow execution (varun, mattmann) + + * OODT-212 Rollback capability for Workflows (sherylj via mattmann) + + * OODT-836, OODT-837 Remove Non-Essential Components (mattmann, mdstarch, magicaltrout) + + * OODT-213 Reading/Writing API for XML-based Workflow Task policy (mattmann) + + * OODT-775 XSD's for pushpull's mimetypes.xml (Lewis John McGibbney via mattmann) + + * OODT-847 New FilemgrMetExtractor to extract File System Attributes (Aditya Dhulipala, rverma via mattmann) * OODT-948 Fix dockerfile (magicaltrout/R B Krishna) http://git-wip-us.apache.org/repos/asf/oodt/blob/423444cb/commons/pom.xml ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/oodt/blob/423444cb/core/pom.xml ---------------------------------------------------------------------- diff --cc core/pom.xml index cbb6195,5e84d83..96444d5 --- a/core/pom.xml +++ b/core/pom.xml @@@ -249,9 -243,19 +249,23 @@@ the License <version>8.7</version> </dependency> <dependency> ++<<<<<<< HEAD + <groupId>org.apache.commons</groupId> + <artifactId>commons-compress</artifactId> + <version>1.12</version> + <groupId>org.apache.curator</groupId> + <artifactId>curator-framework</artifactId> + <version>3.3.0</version> + </dependency> + <dependency> + <groupId>org.apache.curator</groupId> + <artifactId>curator-test</artifactId> + <version>3.3.0</version> + </dependency> + <dependency> + <groupId>org.apache.zookeeper</groupId> + <artifactId>zookeeper</artifactId> + <version>3.5.1-alpha</version> </dependency> <dependency> <groupId>org.apache.cxf</groupId> @@@ -308,6 -317,6 +322,18 @@@ </dependency> <dependency> ++ <groupId>org.apache.lucene</groupId> ++ <artifactId>lucene-queryparser</artifactId> ++ <version>6.1.0</version> ++ </dependency> ++ ++ <dependency> ++ <groupId>org.apache.lucene</groupId> ++ <artifactId>lucene-analyzers-common</artifactId> ++ <version>6.1.0</version> ++ </dependency> ++ ++ <dependency> <groupId>org.apache.oodt</groupId> <artifactId>cas-cli</artifactId> <version>${project.parent.version}</version> http://git-wip-us.apache.org/repos/asf/oodt/blob/423444cb/crawler/pom.xml ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/oodt/blob/423444cb/curator/sso/pom.xml ---------------------------------------------------------------------- diff --cc curator/sso/pom.xml index 0000000,e5025f0..2fb29ef mode 000000,100644..100644 --- a/curator/sso/pom.xml +++ b/curator/sso/pom.xml @@@ -1,0 -1,75 +1,74 @@@ + <?xml version="1.0" encoding="UTF-8"?> + <!-- + Licensed to the Apache Software Foundation (ASF) under one or more contributor + license agreements. See the NOTICE.txt file distributed with this work for + additional information regarding copyright ownership. The ASF licenses this + file to you under the Apache License, Version 2.0 (the "License"); you may not + use this file except in compliance with the License. You may obtain a copy of + the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, WITHOUT + WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the + License for the specific language governing permissions and limitations under + the License. + --> + <project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> + <modelVersion>4.0.0</modelVersion> + <parent> + <groupId>org.apache.oodt</groupId> + <artifactId>oodt-core</artifactId> + <version>1.3-SNAPSHOT</version> + <relativePath>../../core/pom.xml</relativePath> + </parent> + <artifactId>curator-sso</artifactId> + <packaging>jar</packaging> + <name>OODT CAS Curator Single Sign On Security Package</name> + <properties /> + <!-- All dependencies should be listed in core/pom.xml and be ordered alphabetically by package and artifact. + Once the dependency is in the core pom, it can then be used in other modules without the version tags. + For example, within core/pom.xml: + + <dependency> + <groupId>com.amazonaws</groupId> + <artifactId>aws-java-sdk</artifactId> + <version>1.7.4</version> + </dependency> + + Elsewhere in the platform: + <dependency> + <groupId>com.amazonaws</groupId> + <artifactId>aws-java-sdk</artifactId> + </dependency> + + Where possible the same dependency version should be used across the whole platform but if required the version + can be overridden in a specific pom and should have a comment explaing why the version has been overridden + --> + <dependencies> + <dependency> + <groupId>commons-codec</groupId> + <artifactId>commons-codec</artifactId> + <version>1.3</version> + </dependency> + <dependency> - <groupId>commons-httpclient</groupId> - <artifactId>commons-httpclient</artifactId> - <version>3.0</version> ++ <groupId>org.apache.httpcomponents</groupId> ++ <artifactId>httpclient</artifactId> + </dependency> + <dependency> + <groupId>javax.servlet</groupId> + <artifactId>servlet-api</artifactId> + <version>2.4</version> + </dependency> + <dependency> + <groupId>org.apache.oodt</groupId> + <artifactId>cas-metadata</artifactId> + <version>${project.parent.version}</version> + </dependency> + </dependencies> + <build> + <plugins /> + </build> + <distributionManagement /> + </project>
