http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/core/src/test/java/gov/nasa/jpl/mudrod/main/TestMudrodEngine.java ---------------------------------------------------------------------- diff --git a/core/src/test/java/gov/nasa/jpl/mudrod/main/TestMudrodEngine.java b/core/src/test/java/gov/nasa/jpl/mudrod/main/TestMudrodEngine.java new file mode 100644 index 0000000..ff15415 --- /dev/null +++ b/core/src/test/java/gov/nasa/jpl/mudrod/main/TestMudrodEngine.java @@ -0,0 +1,303 @@ +/* + * Licensed under the Apache License, Version 2.0 (the "License"); you + * may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package gov.nasa.jpl.mudrod.main; + +import static org.junit.Assert.fail; + +import org.junit.After; +import org.junit.AfterClass; +import org.junit.Before; +import org.junit.BeforeClass; +import org.junit.Ignore; +import org.junit.Test; + +/** + * Initial test case for {@link gov.nasa.jpl.mudrod.main.MudrodEngine}, currently no + * tests are implemented, this is merely in place to get the JaCoCo test reporting to + * work. + */ +public class TestMudrodEngine { + + /** + * @throws java.lang.Exception + */ + @BeforeClass + public static void setUpBeforeClass() throws Exception { + } + + /** + * @throws java.lang.Exception + */ + @AfterClass + public static void tearDownAfterClass() throws Exception { + } + + /** + * @throws java.lang.Exception + */ + @Before + public void setUp() throws Exception { + } + + /** + * @throws java.lang.Exception + */ + @After + public void tearDown() throws Exception { + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#MudrodEngine()}. + */ + @Ignore + @Test + public final void testMudrodEngine() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startESDriver()}. + */ + @Ignore + @Test + public final void testStartESDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startSparkDriver()}. + */ + @Ignore + @Test + public final void testStartSparkDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#getConfig()}. + */ + @Ignore + @Test + public final void testGetConfig() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#getESDriver()}. + */ + @Ignore + @Test + public final void testGetESDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#setESDriver(gov.nasa.jpl.mudrod.driver.ESDriver)}. + */ + @Ignore + @Test + public final void testSetESDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#loadConfig()}. + */ + @Ignore + @Test + public final void testLoadConfig() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startLogIngest()}. + */ + @Ignore + @Test + public final void testStartLogIngest() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startMetaIngest()}. + */ + @Ignore + @Test + public final void testStartMetaIngest() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startFullIngest()}. + */ + @Ignore + @Test + public final void testStartFullIngest() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#startProcessing()}. + */ + @Ignore + @Test + public final void testStartProcessing() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#end()}. + */ + @Ignore + @Test + public final void testEnd() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#main(java.lang.String[])}. + */ + @Ignore + @Test + public final void testMain() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#getSparkDriver()}. + */ + @Ignore + @Test + public final void testGetSparkDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.main.MudrodEngine#setSparkDriver(gov.nasa.jpl.mudrod.driver.SparkDriver)}. + */ + @Ignore + @Test + public final void testSetSparkDriver() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#Object()}. + */ + @Ignore + @Test + public final void testObject() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#getClass()}. + */ + @Ignore + @Test + public final void testGetClass() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#hashCode()}. + */ + @Ignore + @Test + public final void testHashCode() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#equals(java.lang.Object)}. + */ + @Ignore + @Test + public final void testEquals() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#clone()}. + */ + @Ignore + @Test + public final void testClone() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#toString()}. + */ + @Ignore + @Test + public final void testToString() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#notify()}. + */ + @Ignore + @Test + public final void testNotify() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#notifyAll()}. + */ + @Ignore + @Test + public final void testNotifyAll() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#wait(long)}. + */ + @Ignore + @Test + public final void testWaitLong() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#wait(long, int)}. + */ + @Ignore + @Test + public final void testWaitLongInt() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#wait()}. + */ + @Ignore + @Test + public final void testWait() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link java.lang.Object#finalize()}. + */ + @Ignore + @Test + public final void testFinalize() { + fail("Not yet implemented"); // TODO + } + +}
http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/core/src/test/java/gov/nasa/jpl/mudrod/ontology/process/TestLocalOntology.java ---------------------------------------------------------------------- diff --git a/core/src/test/java/gov/nasa/jpl/mudrod/ontology/process/TestLocalOntology.java b/core/src/test/java/gov/nasa/jpl/mudrod/ontology/process/TestLocalOntology.java new file mode 100644 index 0000000..994f4ed --- /dev/null +++ b/core/src/test/java/gov/nasa/jpl/mudrod/ontology/process/TestLocalOntology.java @@ -0,0 +1,226 @@ +/* + * Licensed under the Apache License, Version 2.0 (the "License"); you + * may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package gov.nasa.jpl.mudrod.ontology.process; + +import static org.junit.Assert.*; + +import java.io.IOException; + +import org.junit.After; +import org.junit.AfterClass; +import org.junit.Before; +import org.junit.BeforeClass; +import org.junit.Ignore; +import org.junit.Test; + +/** + * Test cases for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology} + */ +public class TestLocalOntology { + + /** + * @throws java.lang.Exception + */ + @BeforeClass + public static void setUpBeforeClass() throws Exception { + } + + /** + * @throws java.lang.Exception + */ + @AfterClass + public static void tearDownAfterClass() throws Exception { + } + + private LocalOntology lOnt; + + /** + * @throws java.lang.Exception + */ + @Before + public void setUp() throws Exception { + lOnt = new LocalOntology(); + } + + /** + * @throws java.lang.Exception + */ + @After + public void tearDown() throws Exception { + lOnt = null; + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#LocalOntology()}. + */ + @Test + public final void testLocalOntology() { + assertNotNull("Test setUp should create a new instance of LocalOntology.", lOnt); + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#getInstance()}. + */ + @Test + public final void testGetInstance() { + assertSame("Ontology instance should be of type LocalOntology", LocalOntology.class, lOnt.getInstance().getClass()); + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#load()}. + * @throws IOException + */ + @Ignore + @Test + public final void testLoad() throws IOException { + lOnt.load(); + assertTrue("Resource list should have a minimum of one resource.", lOnt.getLoadedOntologyResources().size() == 1); + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#load(java.lang.String[])}. + */ + @Ignore + @Test + public final void testLoadStringArray() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#getParser()}. + */ + @Ignore + @Test + public final void testGetParser() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#getModel()}. + */ + @Ignore + @Test + public final void testGetModel() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#merge(gov.nasa.jpl.mudrod.ontology.Ontology)}. + */ + @Ignore + @Test + public final void testMerge() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#subclasses(java.lang.String)}. + */ + @Ignore + @Test + public final void testSubclasses() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#synonyms(java.lang.String)}. + */ + @Ignore + @Test + public final void testSynonyms() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#addSearchTerm(java.lang.String, org.apache.jena.ontology.OntResource)}. + */ + @Ignore + @Test + public final void testAddSearchTerm() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#retrieve(java.lang.String)}. + */ + @Ignore + @Test + public final void testRetrieve() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#renderHierarchy(java.io.PrintStream, org.apache.jena.ontology.OntClass, java.util.List, int)}. + */ + @Ignore + @Test + public final void testRenderHierarchy() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#renderClassDescription(java.io.PrintStream, org.apache.jena.ontology.OntClass, int)}. + */ + @Ignore + @Test + public final void testRenderClassDescription() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#renderRestriction(java.io.PrintStream, org.apache.jena.ontology.Restriction)}. + */ + @Ignore + @Test + public final void testRenderRestriction() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#renderURI(java.io.PrintStream, org.apache.jena.shared.PrefixMapping, java.lang.String)}. + */ + @Ignore + @Test + public final void testRenderURI() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#renderAnonymous(java.io.PrintStream, org.apache.jena.rdf.model.Resource, java.lang.String)}. + */ + @Ignore + @Test + public final void testRenderAnonymous() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#indent(java.io.PrintStream, int)}. + */ + @Ignore + @Test + public final void testIndent() { + fail("Not yet implemented"); // TODO + } + + /** + * Test method for {@link gov.nasa.jpl.mudrod.ontology.process.LocalOntology#main(java.lang.String[])}. + */ + @Ignore + @Test + public final void testMain() { + fail("Not yet implemented"); // TODO + } + +} http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/docker/Dockerfile ---------------------------------------------------------------------- diff --git a/docker/Dockerfile b/docker/Dockerfile new file mode 100644 index 0000000..289bf29 --- /dev/null +++ b/docker/Dockerfile @@ -0,0 +1,105 @@ +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 Unless +# +# required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" +# BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either +# express or implied. See the License for the specific language +# governing permissions and limitations under the License. + +# This Dockerfile will build the required environment and software +# stack to easily get up and running with mudrod +# For more documentation please see https://github.com/mudrod/mudrod + +FROM ubuntu:16.04 + +MAINTAINER Mudrod Team <[email protected]> + +# Get the package containing apt-add-repository installed for adding repositories +RUN apt-get update && apt-get install -y software-properties-common + +# Install openJDK 1.8 +RUN apt-get install -y openjdk-8-jdk + +# Install various dependencies +RUN apt-get install -y \ + build-essential \ + git \ + maven \ + openssh-client \ + openssh-server \ + vim \ + wget + +RUN echo "JAVA_HOME=/usr/bin" >> /etc/environment + +RUN echo 'PATH=$PATH:HOME/bin:$JAVA_HOME/bin' >> /etc/profile &&\ + echo 'export JAVA_HOME' >> /etc/profile &&\ + echo 'export PATH' >> /etc/profile + +USER root + +WORKDIR /tmp + +######################## +# Apache Spark 1.6.2 # +######################## +ENV SPARK_PKG_NAME spark-1.6.2 +RUN wget http://archive.apache.org/dist/spark/$SPARK_PKG_NAME/$SPARK_PKG_NAME-bin-without-hadoop.tgz && \ + tar -xvzf $SPARK_PKG_NAME-bin-without-hadoop.tgz && \ + rm -f $SPARK_PKG_NAME-bin-without-hadoop.tgz && \ + mv $SPARK_PKG_NAME-bin-without-hadoop /usr/local/spark + +WORKDIR /usr/local + +# ENV needs to be used, as the above doesn't seem to be visible from cli +ENV JAVA_HOME /usr +ENV SPARK_HOME /usr/local/spark + +# so you can call 'spark-class', 'spark-shell', 'spark-sql', 'spark-submit', etc. +ENV PATH $PATH:$SPARK_HOME/bin + +####################### +# Elasticsearch 2.3.4 # +####################### +ENV ES_PKG_NAME elasticsearch-2.3.4 +RUN wget https://download.elastic.co/elasticsearch/release/org/elasticsearch/distribution/tar/elasticsearch/2.3.4/$ES_PKG_NAME.tar.gz && \ + tar -xvzf $ES_PKG_NAME.tar.gz && \ + rm -f $ES_PKG_NAME.tar.gz && \ + mv $ES_PKG_NAME /usr/local/elasticsearch + +# Define mountable directories. +VOLUME ["/data"] + +# Mount elasticsearch.yml config +ADD config/elasticsearch.yml /usr/local/elasticsearch/config/elasticsearch.yml + +# Expose ports. +# - 9200: HTTP +# - 9300: transport +EXPOSE 9200 +EXPOSE 9300 + +######################### +# Mudrod Master Branch # +######################### +WORKDIR /usr/local +RUN git clone https://github.com/mudrod/mudrod.git +ENV MUDROD_HOME /usr/local/mudrod +WORKDIR $MUDROD_HOME +# So you can call 'mudrod' +ENV PATH $PATH:$MUDROD_HOME/bin +RUN mvn clean install + +# Expose ports. +# - 8080: HTTP Jetty Port +EXPOSE 8080 + +# Ensure that all of the services are running +CMD sh $MUDROD_HOME/docker/run_services.sh + +# Set entry point to the Mudrod executable +ENTRYPOINT ["/usr/local/mudrod/bin/mudrod"] http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/docker/README.md ---------------------------------------------------------------------- diff --git a/docker/README.md b/docker/README.md new file mode 100644 index 0000000..f84ace1 --- /dev/null +++ b/docker/README.md @@ -0,0 +1,52 @@ +# MUDROD Dockerfile + +[](https://hub.docker.com/r/mudrod/mudrod/) +[](https://hub.docker.com/r/mudrod/mudrod/) + +# Pulling from Dockerhub +Mudrod is available on Dockerhub for rapid deployment and prototyping. +To get the Mudrod application and environment make sure you have [Docker](https://www.docker.com/) installed then simply execute: +``` +$ docker pull mudrod/mudrod +$ docker run -t -i mudrod/mudrod /bin/bash + +N.B. If you are on MacOSX you may need to run the following two commands first +$ boot2docker start +$ $(boot2docker shellinit) +``` +You can test it by visiting http://container-ip:8080 in a browser or, if you need access outside the host, on port 8888: +``` +$ docker run -it --rm -p 8888:8080 mudrod:latest +``` + +# Building the Docker Container Manually +Simply execute the following +``` +$ cd docker +$ docker build -t mudrod/mudrod:latest . +$ docker run -t -i -d --name mudrodcontainer mudrod/mudrod /bin/bash +$ docker attach --sig-proxy=false mudrodcontainer +``` +You will now be within the Mudrod environment with all of the tools required to use the software stack, as mentioned in the [Software Requirements](https://github.com/mudrod/mudrod#software-requirements). +You can run mudrod as follows +``` +root@e4e137838adc:/usr/local# mudrod + _____ .___ .___ + / \ __ __ __| _/______ ____ __| _/ + / \ / \| | \/ __ |\_ __ \/ _ \ / __ | +/ Y \ | / /_/ | | | \( <_> ) /_/ | +\____|__ /____/\____ | |__| \____/\____ | + \/ \/ \/ v0.0.1 +Mining and Utilizing Dataset Relevancy from Oceanographic" +Datasets to Improve Data Discovery and Access." +Usage: run COMMAND" +where COMMAND is one of:" + logingest ingest logs into Mudrod" + ... +Most commands print help when invoked w/o parameters." +``` + +# Support and Development +If you require help with this file, or you have some suggestions +for improving it, please [file an issue](https://github.com/mudrod/mudrod/issues) +and use the **docker** tag. http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/docker/config/elasticsearch.yml ---------------------------------------------------------------------- diff --git a/docker/config/elasticsearch.yml b/docker/config/elasticsearch.yml new file mode 100644 index 0000000..72be0f9 --- /dev/null +++ b/docker/config/elasticsearch.yml @@ -0,0 +1,5 @@ +path: + data: /data/data + logs: /data/log + plugins: /data/plugins + work: /data/work http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/docker/run_services.sh ---------------------------------------------------------------------- diff --git a/docker/run_services.sh b/docker/run_services.sh new file mode 100755 index 0000000..d88dfba --- /dev/null +++ b/docker/run_services.sh @@ -0,0 +1,17 @@ +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 Unless +# +# required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" +# BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either +# express or implied. See the License for the specific language +# governing permissions and limitations under the License. + +service sshd start & +/usr/local/spark/sbin/start-all.sh & +/usr/local/elasticsearch/bin/elasticsearch & +cd /usr/local/mudrod/service & +mvn jetty:run \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/eclipse-codeformat.xml ---------------------------------------------------------------------- diff --git a/eclipse-codeformat.xml b/eclipse-codeformat.xml new file mode 100644 index 0000000..eadcaee --- /dev/null +++ b/eclipse-codeformat.xml @@ -0,0 +1,773 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?> +<!-- + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 Unless + + required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" + BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either + express or implied. See the License for the specific language + governing permissions and limitations under the License. +--> +<profiles version="11"> + <profile kind="CodeFormatterProfile" name="Mudrod" version="11"> + <setting + id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_parameters" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_type_declaration" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.brace_position_for_anonymous_type_declaration" + value="end_of_line"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_case" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_opening_brace_in_array_initializer" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_annotation_declaration" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_new_line_before_closing_brace_in_array_initializer" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation" + value="do not insert"/> + <setting id="org.eclipse.jdt.core.formatter.blank_lines_before_field" + value="0"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_new_line_before_else_in_if_statement" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_prefix_operator" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.keep_else_statement_on_same_line" + value="false"/> + <setting id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.comment.insert_new_line_for_parameter" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_annotation_type_declaration" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.indent_breaks_compare_to_cases" + value="true"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" + value="16"/> + <setting + id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer" + value="16"/> + <setting + 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id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_parenthesized_expression" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_invocation" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_assert" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration" + value="end_of_line"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_array_initializer" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_between_empty_braces_in_array_initializer" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_parameterized_type_reference" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_annotation" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments" + value="insert"/> + <setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports" + value="1"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_constant_header" + value="true"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for" + value="insert"/> + <setting + id="org.eclipse.jdt.core.formatter.never_indent_line_comments_on_first_column" + value="false"/> + <setting + id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments" + value="do not insert"/> + <setting + id="org.eclipse.jdt.core.formatter.never_indent_block_comments_on_first_column" + value="false"/> + <setting + id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line" + value="false"/> + </profile> +</profiles> http://git-wip-us.apache.org/repos/asf/incubator-sdap-mudrod/blob/7b76fa16/pom.xml ---------------------------------------------------------------------- diff --git a/pom.xml b/pom.xml new file mode 100644 index 0000000..9bf3f7f --- /dev/null +++ b/pom.xml @@ -0,0 +1,556 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!-- + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 Unless + + required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" + BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either + express or implied. See the License for the specific language + governing permissions and limitations under the License. +--> +<project xmlns="http://maven.apache.org/POM/4.0.0"; + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd";> + <modelVersion>4.0.0</modelVersion> + + <groupId>gov.nasa.jpl.mudrod</groupId> + <artifactId>mudrod-parent</artifactId> + <version>0.0.1-SNAPSHOT</version> + <packaging>pom</packaging> + + <name>Mudrod :: Parent</name> + <url>https://github.com/mudrod/mudrod.git</url> + <description>MUDROD: Mining and Utilizing Dataset Relevancy from + Oceanographic Datasets + to Improve Data Discovery and Access. MUDROD is a semantic discovery and + search project + funded by NASA AIST (NNX15AM85G). + </description> + + <licenses> + <license> + <name>The Apache Software License, Version 2.0</name> + <url>http://www.apache.org/licenses/LICENSE-2.0.txt</url> + </license> + </licenses> + + <organization> + <name>George Mason University</name> + <url>https://www2.gmu.edu/</url> + </organization> + + <developers> + <developer> + <id>lewismc</id> + <name>Lewis John McGibbney</name> + <email>lewis[dot]j[dot]mcgibbney[at]jpl[dot]nasa[dot]gov</email> + <roles> + <role>Committer</role> + </roles> + <organization>NASA Jet Propulsion Laboratory</organization> + </developer> + <developer> + <id>Yongyao</id> + <name>Yongyao Jiang</name> + <email>J[dot]yongyao11[at]gmail[dot]com</email> + <roles> + <role>Committer</role> + </roles> + <organization>NSF Spatiotemporal Innovation Center, George Mason + University + </organization> + </developer> + <developer> + <id>quintinali</id> + <name>Yun Li</name> + <email>yli38[at]gmu[dot]edu</email> + <roles> + <role>Committer</role> + </roles> + <organization>NSF Spatiotemporal Innovation Center, George Mason + University + </organization> + </developer> + </developers> + + <issueManagement> + <system>Github Issues</system> + <url>https://github.com/mudrod/mudrod/issues</url> + </issueManagement> + <ciManagement> + <system>TravisCI</system> + <url>https://travis-ci.org/mudrod/mudrod</url> + </ciManagement> + + <properties> + <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding> + <implementation.build>${scmBranch}@r${buildNumber} + </implementation.build> + <implementation.build.tstamp>${maven.build.timestamp} + </implementation.build.tstamp> + <maven.compiler.source>1.8</maven.compiler.source> + <maven.compiler.target>1.8</maven.compiler.target> + <spark.version>2.1.0</spark.version> + <findbugs.version>3.0.4</findbugs.version> + <xml.maven.version>1.0.1</xml.maven.version> + <jacoco.version>0.7.10-SNAPSHOT</jacoco.version> + <jena.version>3.3.0</jena.version> + <project.reporting.outputEncoding>UTF-8 + </project.reporting.outputEncoding> + <elastic.version>5.2.0</elastic.version> + <!--argLine>-Xmx4096m ${itCoverageAgent}</argLine--> + </properties> + + <scm> + <developerConnection>scm:git:https://github.com/mudrod/mudrod.git + </developerConnection> + <connection>scm:git:http://github.com/mudrod/mudrod.git</connection> + <url>https://github.com/mudrod/mudrod.git</url> + <tag>HEAD</tag> + </scm> + + <distributionManagement> + <snapshotRepository> + <id>ossrh</id> + <url>https://oss.sonatype.org/content/repositories/snapshots/</url> + </snapshotRepository> + <repository> + <id>ossrh</id> + <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/ + </url> + </repository> + </distributionManagement> + + <pluginRepositories> + <pluginRepository> + <id>ossrh</id> + <url>https://oss.sonatype.org/content/repositories/snapshots/</url> + </pluginRepository> + </pluginRepositories> + + <modules> + <module>core</module> + <module>service</module> + <module>web</module> + </modules> + + <build> + <plugins> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>buildnumber-maven-plugin</artifactId> + <version>1.4</version> + <executions> + <execution> + <phase>validate</phase> + <goals> + <goal>create</goal> + </goals> + </execution> + </executions> + <configuration> + <doCheck>false</doCheck> + <doUpdate>false</doUpdate> + <!-- Use committed revision so it does not change every time svn + update is run --> + <useLastCommittedRevision>true</useLastCommittedRevision> + <!-- default revision number if unavailable --> + <revisionOnScmFailure>??????</revisionOnScmFailure> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-surefire-plugin</artifactId> + <version>2.19.1</version> + <configuration> + <forkCount>1</forkCount> + <reuseForks>true</reuseForks> + <argLine>${argLine} -Xmx2048m</argLine> + </configuration> + <executions> + <execution> + <id>default-test</id> + <phase>test</phase> + <goals> + <goal>test</goal> + </goals> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-failsafe-plugin</artifactId> + <version>2.19.1</version> + <configuration> + <reuseForks>true</reuseForks> + <argLine>${argLine} -Xmx4096m ${itCoverageAgent} + </argLine> + </configuration> + <executions> + <execution> + <goals> + <goal>integration-test</goal> + <goal>verify</goal> + </goals> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-dependency-plugin</artifactId> + <version>2.10</version> + <inherited>true</inherited> + <executions> + <execution> + <id>copy</id> + <phase>package</phase> + <goals> + <goal>copy-dependencies</goal> + </goals> + <configuration> + <outputDirectory>lib</outputDirectory> + </configuration> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.jacoco</groupId> + <artifactId>jacoco-maven-plugin</artifactId> + <version>${jacoco.version}</version> + <configuration> + <destFile> + ${basedir}/target/coverage-reports/jacoco-unit.exec + </destFile> + <dataFile> + ${basedir}/target/coverage-reports/jacoco-unit.exec + </dataFile> + </configuration> + <executions> + <execution> + <id>default-prepare-agent</id> + <goals> + <goal>prepare-agent</goal> + </goals> + </execution> + <execution> + <id>prepare-unit-tests</id> + <goals> + <goal>prepare-agent</goal> + </goals> + </execution> + <!-- prepare agent for measuring integration tests --> + <execution> + <id>prepare-integration-tests</id> + <goals> + <goal>prepare-agent</goal> + </goals> + <phase>pre-integration-test</phase> + <configuration> + <propertyName>itCoverageAgent</propertyName> + </configuration> + </execution> + <execution> + <id>jacoco-site</id> + <phase>verify</phase> + <goals> + <goal>report</goal> + </goals> + </execution> + <execution> + <id>report</id> + <phase>test</phase> + <goals> + <goal>report</goal> + </goals> + </execution> + </executions> + </plugin> + </plugins> + <pluginManagement> + <plugins> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-clean-plugin</artifactId> + <version>3.0.0</version> + <configuration> + <filesets> + <fileset> + <directory>${basedir}/lib</directory> + <followSymlinks>false</followSymlinks> + <useDefaultExcludes>true</useDefaultExcludes> + <includes> + <include>*.jar</include> + </includes> + </fileset> + </filesets> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.rat</groupId> + <artifactId>apache-rat-plugin</artifactId> + <version>0.12</version> + <executions> + <execution> + <phase>package</phase> + <goals> + <goal>check</goal> + </goals> + </execution> + </executions> + <configuration> + <excludes> + <exclude>**/tmp/**</exclude> + <exclude>**/META-INF/**</exclude> + <exclude>**/resources/**</exclude> + </excludes> + </configuration> + </plugin> + </plugins> + </pluginManagement> + </build> + <profiles> + <profile> + <id>only-eclipse</id> + <activation> + <property> + <name>m2e.version</name> + </property> + </activation> + <build> + <pluginManagement> + <plugins> + <!--This plugin's configuration is used to store Eclipse m2e + settings only. It has no influence on the Maven build itself. --> + <plugin> + <groupId>org.eclipse.m2e</groupId> + <artifactId>lifecycle-mapping</artifactId> + <version>1.0.0</version> + <configuration> + <lifecycleMappingMetadata> + <pluginExecutions> + <pluginExecution> + <pluginExecutionFilter> + <groupId>org.codehaus.mojo + </groupId> + <artifactId> + buildnumber-maven-plugin + </artifactId> + <versionRange> + [${buildnumber-maven-plugin.version},) + </versionRange> + <goals> + <goal>create</goal> + </goals> + </pluginExecutionFilter> + <action> + <ignore></ignore> + </action> + </pluginExecution> + </pluginExecutions> + </lifecycleMappingMetadata> + </configuration> + </plugin> + </plugins> + </pluginManagement> + </build> + </profile> + </profiles> + + <reporting> + <plugins> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>findbugs-maven-plugin</artifactId> + <version>${findbugs.version}</version> + <configuration> + <findbugsXmlOutputDirectory> + ${project.build.directory}/findbugs + </findbugsXmlOutputDirectory> + <failOnError>false</failOnError> + </configuration> + </plugin> + <plugin> + <groupId>org.codehaus.mojo</groupId> + <artifactId>xml-maven-plugin</artifactId> + <version>${xml.maven.version}</version> + <configuration> + <transformationSets> + <transformationSet> + <dir>${project.build.directory}/findbugs</dir> + <outputDir>${project.build.directory}/findbugs + </outputDir> + <stylesheet>fancy-hist.xsl</stylesheet> + <!--<stylesheet>default.xsl</stylesheet>--> + <!--<stylesheet>plain.xsl</stylesheet>--> + <!--<stylesheet>fancy.xsl</stylesheet>--> + <!--<stylesheet>summary.xsl</stylesheet>--> + <fileMappers> + <fileMapper + implementation="org.codehaus.plexus.components.io.filemappers.FileExtensionMapper"> + <targetExtension>.html</targetExtension> + </fileMapper> + </fileMappers> + </transformationSet> + </transformationSets> + </configuration> + </plugin> + </plugins> + </reporting> + + <dependencyManagement> + <dependencies> + + <!-- Elasticsearch dependencies --> + <dependency> + <groupId>org.elasticsearch</groupId> + <artifactId>elasticsearch</artifactId> + <version>${elastic.version}</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.elasticsearch.client</groupId> + <artifactId>transport</artifactId> + <version>${elastic.version}</version> + <scope>compile</scope> + <exclusions> + <exclusion> + <groupId>org.elasticsearch.plugin</groupId> + <artifactId>transport-netty4-client</artifactId> + </exclusion> + </exclusions> + </dependency> + <dependency> + <groupId>org.elasticsearch</groupId> + <artifactId>elasticsearch-spark-20_2.11</artifactId> + <version>${elastic.version}</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>joda-time</groupId> + <artifactId>joda-time</artifactId> + <version>2.9.4</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>com.carrotsearch</groupId> + <artifactId>hppc</artifactId> + <version>0.7.1</version> + <scope>compile</scope> + </dependency> + <!-- End of Elasticsearch dependencies --> + + <!-- Spark dependencies --> + <dependency> + <groupId>org.apache.spark</groupId> + <artifactId>spark-core_2.11</artifactId> + <version>${spark.version}</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.apache.spark</groupId> + <artifactId>spark-sql_2.11</artifactId> + <version>${spark.version}</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.apache.spark</groupId> + <artifactId>spark-mllib_2.11</artifactId> + <version>${spark.version}</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>com.github.fommil.netlib</groupId> + <artifactId>all</artifactId> + <version>1.1.2</version> + <scope>runtime</scope> + <type>pom</type> + </dependency> + <dependency> + <groupId>org.scala-lang</groupId> + <artifactId>scala-library</artifactId> + <version>2.11.8</version> + <scope>compile</scope> + </dependency> + <!-- End of Spark dependencies --> + + <!-- Jena dependencies --> + <dependency> + <groupId>org.apache.jena</groupId> + <artifactId>jena-core</artifactId> + <version>${jena.version}</version> + <scope>compile</scope> + </dependency> + <!-- End of Jena dependencies --> + + <!-- Misc dependencies --> + <dependency> + <groupId>com.google.code.gson</groupId> + <artifactId>gson</artifactId> + <version>2.5</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.jdom</groupId> + <artifactId>jdom</artifactId> + <version>2.0.2</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>commons-cli</groupId> + <artifactId>commons-cli</artifactId> + <version>1.2</version> + <scope>compile</scope> + </dependency> + <!-- End of Misc dependencies --> + + <!-- Logging dependencies --> + <dependency> + <groupId>org.apache.logging.log4j</groupId> + <artifactId>log4j-api</artifactId> + <version>2.6.2</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.apache.logging.log4j</groupId> + <artifactId>log4j-core</artifactId> + <version>2.6.2</version> + <scope>runtime</scope> + </dependency> + <!-- End of Logging dependencies --> + + <!-- Webservices Dependencies --> + <dependency> + <groupId>javax.servlet</groupId> + <artifactId>javax.servlet-api</artifactId> + <version>3.1.0</version> + <scope>provided</scope> + </dependency> + <dependency> + <groupId>org.apache.cxf</groupId> + <artifactId>cxf-rt-frontend-jaxrs</artifactId> + <version>3.1.7</version> + <scope>compile</scope> + </dependency> + <dependency> + <groupId>org.apache.cxf</groupId> + <artifactId>cxf-rt-rs-client</artifactId> + <version>3.1.7</version> + <scope>compile</scope> + </dependency> + + <!-- Testing dependencies --> + <dependency> + <groupId>junit</groupId> + <artifactId>junit</artifactId> + <version>4.12</version> + <scope>test</scope> + </dependency> + <!-- End of Testing Dependencies --> + + </dependencies> + </dependencyManagement> +</project>
