svn commit: r1738695 [4/10] - in /incubator/singa/site/trunk/content: ./ markdown/docs/ markdown/docs/zh/ markdown/releases/ markdown/v0.2.0/ markdown/v0.2.0/jp/ markdown/v0.2.0/kr/ markdown/v0.2.0/zh/

[wangwei]

Added: incubator/singa/site/trunk/content/markdown/v0.2.0/jp/overview.md
URL: 
http://svn.apache.org/viewvc/incubator/singa/site/trunk/content/markdown/v0.2.0/jp/overview.md?rev=1738695&view=auto
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--- incubator/singa/site/trunk/content/markdown/v0.2.0/jp/overview.md (added)
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+# イントロダクション
+
+---
+
+SINGAは、大規模なデータ分析の為のディープラーニングモデルのトレーニングを目的とした「分散ディープラーニング・プラットフォーãƒ
 ã€ã§ã™ã€‚
+モデルとなるネットワークの「レイヤー」概念に基づき、直感的にプログラミングできるようデザインされています。
+
+* Convolutional Neural Network (畳み込みニューラルネットワーク) 
のようなフィードフォワードネットワークや、Restricted 
Boltzmann Machine (制限ボルツマンマシン) 
のようなエネルギーモデル、Recurrent Neural Network 
(再帰型ニューラルネットワーク) 
モデル等、多様なモデルをサポートします。
+
+* 様々な「レイヤー」が、Built-in Layer として実装
されています。
+
+* SINGAのアーキテクチャーは、synchronous (同期)、asynchronous 
(非同期)、そして hybrid (ハイブリッド) 
トレーニングを実行できるよう設計されています。
+
+* 
大規模なモデルのトレーニングを並列化するための、ニューラルネットワーク分割スキーãƒ
  (バッチや特徴の分割) をサポートしています。
+
+
+## 目的
+
+拡張性：分散システム
として、より多くのリソースを利用し、特定の精度に達するまでのトレーニングスピードを向上させる。
+
+使いやすさ：大規模な分散モデルの効率的なトレーニングにå¿
…
要となる、データやモデルの分割、ネットワーク通信等、プログラマーにとって時間のかかる作業を簡略化し、ディープで複雑なモデルやアルゴリズãƒ
 ã®å®Ÿè£…を容易にする。
+
+
+## 設計理念
+
+スケーラビリティは、分散ディープラーニングにおいて重要なç
 ”究課題です。
+SINGAは、様々なトレーニングフレーム
ワークのスケーラビリティーを保てるようよう設計されています。
+* Synchronous 
(同期)：トレーニングの１ステップで得られる効果を高めます。
+* Asynchronous (非同期)：トレーニングの収束率を高めます。
+* Hybrid 
(ハイブリッド)：コストやリソース(クラスターサイズ等)に合った効果と収束率のバランスをとり、スケーラビリティーを高めます。
+
+SINGAは、ディープラーニングモデルのネットワークの「レイヤー」概念に基づき、直感的にプログラミング出来るようデザインされています。様ã€
…なモデルを実装しトレーニングできます。
+
+## システム概要
+
+<img src="../../images/sgd.png" align="center" width="400px"/>
+<span><strong>Figure 1 - SGD フロー</strong></span>
+
+「ディープラーニングモデルをトレーニングする」とは、
+特定のタスク(分類、予測等)を達成するために使われる特徴量を生成する変換関数の最適なパラメターを探すことです。
+パラメターの良し悪しは、[Cross-Entropy 
Loss](https://en.wikipedia.org/wiki/Cross_entropy) 等の loss function 
(損失関数)で判断します。この関数は一般的に非線形、または非凸関数なので、閉解を探すのが難しいです。
+
+そこで、Stochastic Gradient Descent (確率的勾配降下法) 
を利用します。
+Figure 1 のように、ランダム
に初期化されたパラメーターの値を、損失関数が小さくなるよう繰り返しアップデートしていきます。
+
+<img src="../../images/overview.png" align="center" width="400px"/>
+<span><strong>Figure 2 - SINGA 概要</strong></span>
+
+トレーニングに要するワークロードは、workers と servers 
に分散されます。Figure 2 のように、ループ毎に workers は 
*TrainOneBatch* 関数を呼び、パラメーター勾配を計算します。
+*TrainOneBatch* は、ニューラルネットワークの構造
が記述された *NeuralNet* 
オブジェクトに基づいて、「レイヤー」をé 
†ã«è¦‹ã¦å›žã‚Šã¾ã™ã€‚
+計算された勾配はローカルノードの stub 
に送られ、集計された後、対応する servers 
に送られます。Servers 
は、アップデートされたパラメーターを workers 
に送り返し、次のループを実行します。
+
+
+## ジョブ
+
+SINGA 
の「ジョブ」とは、ニューラルネットワークモデルとデータ、トレーニング方法やクラスタートポロジー等が記述された、「Job
 Configuration」を指します。
+Job Configurationは、Figure 
2に描かれた次の4つのコンポネントを特定します。
+
+  * [NeuralNet](neural-net.html)：ニューラルネットワークの構造
と、各「レイヤー」の設定を記述します。
+  * 
[TrainOneBatch](train-one-batch.html)：異なるモデルカテゴリに適したアルゴリズãƒ
 ã‚’記述します。
+  * [Updater](updater.html)： 
パラメーターのアップデート方法を記述します。
+  * [Cluster Topology](distributed-training.html)：workers と servers 
の分散トポロジーを記述します。
+
+[main 関数](programming-guide.html)の SINGA 
ドライバにジョブを渡します。
+
+このプロセスは、Hadoopでのジョブサブミッションに似ています。
+ユーザーが main関数内でジョブの設定をします。
+Hadoopユーザーは、自身の mapper や reducer 
を設定しますが、SINGAユーザーは、自身の「レイヤー」やUpdater等を設定します。

Added: incubator/singa/site/trunk/content/markdown/v0.2.0/jp/param.md
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+# Parameters
+
+---
+
+A `Param` object in SINGA represents a set of parameters, e.g., a weight matrix
+or a bias vector. *Basic user guide* describes how to configure for a `Param`
+object, and *Advanced user guide* provides details on implementing users'
+parameter initialization methods.
+
+## Basic user guide
+
+The configuration of a Param object is inside a layer configuration, as the
+`Param` are associated with layers. An example configuration is like
+
+    layer {
+      ...
+      param {
+        name : "p1"
+        init {
+          type : kConstant
+          value: 1
+        }
+      }
+    }
+
+The [SGD algorithm](overview.html) starts with initializing all
+parameters according to user specified initialization method (the `init` 
field).
+For the above example,
+all parameters in `Param` "p1" will be initialized to constant value 1. The
+configuration fields of a Param object is defined in 
[ParamProto](../api/classsinga_1_1ParamProto.html):
+
+  * name, an identifier string. It is an optional field. If not provided, SINGA
+  will generate one based on layer name and its order in the layer.
+  * init, field for setting initialization methods.
+  * share_from, name of another `Param` object, from which this `Param` will 
share
+  configurations and values.
+  * lr_scale, float value to be multiplied with the learning rate when
+  [updating the parameters](updater.html)
+  * wd_scale, float value to be multiplied with the weight decay when
+  [updating the parameters](updater.html)
+
+There are some other fields that are specific to initialization methods.
+
+### Initialization methods
+
+Users can set the `type` of `init` use the following built-in initialization
+methods,
+
+  * `kConst`, set all parameters of the Param object to a constant value
+
+        type: kConst
+        value: float  # default is 1
+
+  * `kGaussian`, initialize the parameters following a Gaussian distribution.
+
+        type: kGaussian
+        mean: float # mean of the Gaussian distribution, default is 0
+        std: float # standard variance, default is 1
+        value: float # default 0
+
+  * `kUniform`, initialize the parameters following an uniform distribution
+
+        type: kUniform
+        low: float # lower boundary, default is -1
+        high: float # upper boundary, default is 1
+        value: float # default 0
+
+  * `kGaussianSqrtFanIn`, initialize `Param` objects with two dimensions (i.e.,
+  matrix) using `kGaussian` and then
+  multiple each parameter with `1/sqrt(fan_in)`, where`fan_in` is the number of
+  columns of the matrix.
+
+  * `kUniformSqrtFanIn`, the same as `kGaussianSqrtFanIn` except that the
+  distribution is an uniform distribution.
+
+  * `kUniformFanInOut`, initialize matrix `Param` objects using `kUniform` and 
then
+  multiple each parameter with `sqrt(6/(fan_in + fan_out))`, where`fan_in +
+  fan_out` sums up the number of columns and rows of the matrix.
+
+For all above initialization methods except `kConst`, if their `value` is not
+1, every parameter will be multiplied with `value`. Users can also implement
+their own initialization method following the *Advanced user guide*.
+
+
+## Advanced user guide
+
+This sections describes the details on implementing new parameter
+initialization methods.
+
+### Base ParamGenerator
+All initialization methods are implemented as
+subclasses of the base `ParamGenerator` class.
+
+    class ParamGenerator {
+     public:
+      virtual void Init(const ParamGenProto&);
+      void Fill(Param*);
+
+     protected:
+      ParamGenProto proto_;
+    };
+
+Configurations of the initialization method is in `ParamGenProto`. The `Fill`
+function fills the `Param` object (passed in as an argument).
+
+### New ParamGenerator subclass
+
+Similar to implement a new Layer subclass, users can define a configuration
+protocol message,
+
+    # in user.proto
+    message FooParamProto {
+      optional int32 x = 1;
+    }
+    extend ParamGenProto {
+      optional FooParamProto fooparam_conf =101;
+    }
+
+The configuration of `Param` would be
+
+    param {
+      ...
+      init {
+        user_type: 'FooParam" # must use user_type for user defined methods
+        [fooparam_conf] { # must use brackets for configuring user defined 
messages
+          x: 10
+        }
+      }
+    }
+
+The subclass could be declared as,
+
+    class FooParamGen : public ParamGenerator {
+     public:
+      void Fill(Param*) override;
+    };
+
+Users can access the configuration fields in `Fill` by
+
+    int x = proto_.GetExtension(fooparam_conf).x();
+
+To use the new initialization method, users need to register it in the
+[main function](programming-guide.html).
+
+    driver.RegisterParamGenerator<FooParamGen>("FooParam")  # must be 
consistent with the user_type in configuration
+
+{% comment %}
+### Base Param class
+
+### Members
+
+    int local_version_;
+    int slice_start_;
+    vector<int> slice_offset_, slice_size_;
+
+    shared_ptr<Blob<float>> data_;
+    Blob<float> grad_;
+    ParamProto proto_;
+
+Each Param object has a local version and a global version (inside the data
+Blob). These two versions are used for synchronization. If multiple Param
+objects share the same values, they would have the same `data_` field.
+Consequently, their global version is the same. The global version is updated
+by [the stub thread](communication.html). The local version is
+updated in `Worker::Update` function which assigns the global version to the
+local version. The `Worker::Collect` function is blocked until the global
+version is larger than the local version, i.e., when `data_` is updated. In
+this way, we synchronize workers sharing parameters.
+
+In Deep learning models, some Param objects are 100 times larger than others.
+To ensure the load-balance among servers, SINGA slices large Param objects. The
+slicing information is recorded by `slice_*`. Each slice is assigned a unique
+ID starting from 0. `slice_start_` is the ID of the first slice of this Param
+object. `slice_offset_[i]` is the offset of the i-th slice in this Param
+object. `slice_size_[i]` is the size of the i-th slice. These slice information
+is used to create messages for transferring parameter values or gradients to
+different servers.
+
+Each Param object has a `grad_` field for gradients. Param objects do not share
+this Blob although they may share `data_`.  Because each layer containing a
+Param object would contribute gradients. E.g., in RNN, the recurrent layers
+share parameters values, and the gradients used for updating are averaged from 
all recurrent
+these recurrent layers. In SINGA, the stub thread will aggregate local
+gradients for the same Param object. The server will do a global aggregation
+of gradients for the same Param object.
+
+The `proto_` field has some meta information, e.g., name and ID. It also has a
+field called `owner` which is the ID of the Param object that shares parameter
+values with others.
+
+### Functions
+The base Param class implements two sets of functions,
+
+    virtual void InitValues(int version = 0);  // initialize values according 
to `init_method`
+    void ShareFrom(const Param& other);  // share `data_` from `other` Param
+    --------------
+    virtual Msg* GenGetMsg(bool copy, int slice_idx);
+    virtual Msg* GenPutMsg(bool copy, int slice_idx);
+    ... // other message related functions.
+
+Besides the functions for processing the parameter values, there is a set of
+functions for generating and parsing messages. These messages are for
+transferring parameter values or gradients between workers and servers. Each
+message corresponds to one Param slice. If `copy` is false, it means the
+receiver of this message is in the same process as the sender. In such case,
+only pointers to the memory of parameter value (or gradient) are wrapped in
+the message; otherwise, the parameter values (or gradients) should be copied
+into the message.
+
+
+## Implementing Param subclass
+Users can extend the base Param class to implement their own parameter
+initialization methods and message transferring protocols. Similar to
+implementing a new Layer subclasses, users can create google protocol buffer
+messages for configuring the Param subclass. The subclass, denoted as FooParam
+should be registered in main.cc,
+
+    dirver.RegisterParam<FooParam>(kFooParam);  // kFooParam should be 
different to 0, which is for the base Param type
+
+
+  * type, an integer representing the `Param` type. Currently SINGA provides 
one
+    `Param` implementation with type 0 (the default type). If users want
+    to use their own Param implementation, they should extend the base Param
+    class and configure this field with `kUserParam`
+
+{% endcomment %}

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+# Programmer Guide
+
+---
+
+To submit a training job, users must provide the configuration of the
+four components shown in Figure 1:
+
+  * a [NeuralNet](neural-net.html) describing the neural net structure with 
the detailed layer setting and their connections;
+  * a [TrainOneBatch](train-one-batch.html) algorithm which is tailored for 
different model categories;
+  * an [Updater](updater.html) defining the protocol for updating parameters 
at the server side;
+  * a [Cluster Topology](distributed-training.html) specifying the distributed 
architecture of workers and servers.
+
+The *Basic user guide* section describes how to submit a training job using
+built-in components; while the *Advanced user guide* section presents details
+on writing user's own main function to register components implemented by
+themselves. In addition, the training data must be prepared, which has the same
+[process](data.html) for both advanced users and basic users.
+
+<img src="../../images/overview.png" align="center" width="400px"/>
+<span><strong>Figure 1 - SINGA overview.</strong></span>
+
+
+
+## Basic user guide
+
+Users can use the default main function provided by SINGA to submit the 
training
+job. For this case, a job configuration file written as a google protocol
+buffer message for the [JobProto](../../api/classsinga_1_1JobProto.html) must 
be provided in the command line,
+
+    ./bin/singa-run.sh -conf <path to job conf> [-resume] [-test]
+
+* `-resume` is for continuing the training from last 
[checkpoint](checkpoint.html).
+* `-test` is for testing the performance of previously trained model and 
extracting features for new data,
+more details are available [here](test.html).
+
+The [MLP](mlp.html) and [CNN](cnn.html)
+examples use built-in components. Please read the corresponding pages for their
+job configuration files. The subsequent pages will illustrate the details on
+each component of the configuration.
+
+## Advanced user guide
+
+If a user's model contains some user-defined components, e.g.,
+[Updater](updater.html), he has to write a main function to
+register these components. It is similar to Hadoop's main function. Generally,
+the main function should
+
+  * initialize SINGA, e.g., setup logging.
+
+  * register user-defined components.
+
+  * create and pass the job configuration to SINGA driver
+
+An example main function is like
+
+    #include <string>
+    #include "singa.h"
+    #include "user.h"  // header for user code
+
+    int main(int argc, char** argv) {
+      singa::Driver driver;
+      driver.Init(argc, argv);
+      bool resume;
+      // parse resume option from argv.
+
+      // register user defined layers
+      driver.RegisterLayer<FooLayer, std::string>("kFooLayer");
+      // register user defined updater
+      driver.RegisterUpdater<FooUpdater, std::string>("kFooUpdater");
+      ...
+      auto jobConf = driver.job_conf();
+      //  update jobConf
+
+      driver.Submit(resume, jobConf);
+      return 0;
+    }
+
+The Driver class' `Init` method will load a job configuration file provided by
+users as a command line argument (`-conf <job conf>`). It contains at least the
+cluster topology and returns the `jobConf` for users to update or fill in
+configurations of neural net, updater, etc. If users define subclasses of
+Layer, Updater, Worker and Param, they should register them through the driver.
+Finally, the job configuration is submitted to the driver which starts the
+training.
+
+We will provide helper functions to make the configuration easier in the
+future, like [keras](https://github.com/fchollet/keras).
+
+Users need to compile and link their code (e.g., layer implementations and the 
main
+file) with SINGA library (*.libs/libsinga.so*) to generate an
+executable file, e.g., with name *mysinga*.  To launch the program, users just 
pass the
+path of the *mysinga* and base job configuration to *./bin/singa-run.sh*.
+
+    ./bin/singa-run.sh -conf <path to job conf> -exec <path to mysinga> [other 
arguments]
+
+The [RNN application](rnn.html) provides a full example of
+implementing the main function for training a specific RNN model.

Added: 
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URL: 
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Tue Apr 12 06:22:20 2016
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+# Programming Guide
+
+---
+
+To submit a training job, users must provide the configuration of the
+four components shown in Figure 1:
+
+  * a [NeuralNet](neural-net.html) describing the neural net structure with 
the detailed layer setting and their connections;
+  * a [TrainOneBatch](train-one-batch.html) algorithm which is tailored for 
different model categories;
+  * an [Updater](updater.html) defining the protocol for updating parameters 
at the server side;
+  * a [Cluster Topology](distributed-training.html) specifying the distributed 
architecture of workers and servers.
+
+The *Basic user guide* section describes how to submit a training job using
+built-in components; while the *Advanced user guide* section presents details
+on writing user's own main function to register components implemented by
+themselves. In addition, the training data must be prepared, which has the same
+[process](data.html) for both advanced users and basic users.
+
+<img src="../../images/overview.png" align="center" width="400px"/>
+<span><strong>Figure 1 - SINGA overview.</strong></span>
+
+
+
+## Basic user guide
+
+Users can use the default main function provided SINGA to submit the training
+job. For this case, a job configuration file written as a google protocol
+buffer message for the [JobProto](../api/classsinga_1_1JobProto.html) must be 
provided in the command line,
+
+    ./bin/singa-run.sh -conf <path to job conf> [-resume]
+
+`-resume` is for continuing the training from last
+[checkpoint](checkpoint.html).
+The [MLP](mlp.html) and [CNN](cnn.html)
+examples use built-in components. Please read the corresponding pages for their
+job configuration files. The subsequent pages will illustrate the details on
+each component of the configuration.
+
+## Advanced user guide
+
+If a user's model contains some user-defined components, e.g.,
+[Updater](updater.html), he has to write a main function to
+register these components. It is similar to Hadoop's main function. Generally,
+the main function should
+
+  * initialize SINGA, e.g., setup logging.
+
+  * register user-defined components.
+
+  * create and pass the job configuration to SINGA driver
+
+
+An example main function is like
+
+    #include "singa.h"
+    #include "user.h"  // header for user code
+
+    int main(int argc, char** argv) {
+      singa::Driver driver;
+      driver.Init(argc, argv);
+      bool resume;
+      // parse resume option from argv.
+
+      // register user defined layers
+      driver.RegisterLayer<FooLayer>(kFooLayer);
+      // register user defined updater
+      driver.RegisterUpdater<FooUpdater>(kFooUpdater);
+      ...
+      auto jobConf = driver.job_conf();
+      //  update jobConf
+
+      driver.Train(resume, jobConf);
+      return 0;
+    }
+
+The Driver class' `Init` method will load a job configuration file provided by
+users as a command line argument (`-conf <job conf>`). It contains at least the
+cluster topology and returns the `jobConf` for users to update or fill in
+configurations of neural net, updater, etc. If users define subclasses of
+Layer, Updater, Worker and Param, they should register them through the driver.
+Finally, the job configuration is submitted to the driver which starts the
+training.
+
+We will provide helper functions to make the configuration easier in the
+future, like [keras](https://github.com/fchollet/keras).
+
+Users need to compile and link their code (e.g., layer implementations and the 
main
+file) with SINGA library (*.libs/libsinga.so*) to generate an
+executable file, e.g., with name *mysinga*.  To launch the program, users just 
pass the
+path of the *mysinga* and base job configuration to *./bin/singa-run.sh*.
+
+    ./bin/singa-run.sh -conf <path to job conf> -exec <path to mysinga> [other 
arguments]
+
+The [RNN application](rnn.html) provides a full example of
+implementing the main function for training a specific RNN model.

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+# クイック スタート
+
+---
+
+## SINGA セットアップ
+
+SINGAのインストールについては[こちら](installation.html)をご覧くã
 ã•ã„。
+
+### Zookeeper の実行
+
+SINGAのトレーニングは　[zookeeper](https://zookeeper.apache.org/) 
を利用します。まずは zookeeper 
サービスが開始されていることを確認してください。
+
+準備された thirdparty のスクリプトを使って zookeeper 
をインストールした場合、次のスクリプトを実行してくだ
さい。
+
+    #goto top level folder
+    cd  SINGA_ROOT
+    ./bin/zk-service.sh start
+
+(`./bin/zk-service.sh stop` // zookeeper の停止).
+
+デフォルトのポートを使用せずに zookeeper 
をスタートさせる時は、`conf/singa.conf`を編集してください。
+
+    zookeeper_host: "localhost:YOUR_PORT"
+
+## スタンドアローンモードでの実行
+
+スタンドアローンモードでSINGAを実行するとは、[Mesos](http://mesos.apache.org/)
 や 
[YARN](http://hadoop.apache.org/docs/current/hadoop-yarn/hadoop-yarn-site/YARN.html)
 のようなクラスターマネージャー利用しないå 
´åˆã®ã“とを言います。
+
+### Single ノードでのトレーニング
+
+１つのプロセスがローンチされます。
+例として、
+[CIFAR-10](http://www.cs.toronto.edu/~kriz/cifar.html) 
データセットを利用して
+[CNN 
モデル](http://papers.nips.cc/paper/4824-imagenet-classification-with-deep-convolutional-neural-networks)
 をトレーニングさせます。
+ハイパーパラメーターは、[cuda-convnet](https://code.google.com/p/cuda-convnet/)
 に基づいて設定されてあります。
+詳細は、[CNN サンプル](cnn.html) のページをご覧ください。
+
+
+#### データと、ジョブ設定
+
+データセットのダウンロードと、Triaing や Test 
のためのデータシャードの生成は次のように行います。
+
+    cd examples/cifar10/
+    cp Makefile.example Makefile
+    make download
+    make create
+
+Training と Test データセットは、それぞれ *cifar10-train-shard*
+と *cifar10-test-shard* 
フォルダーに作られます。　すべての画像の特徴平均を記述した
 *image_mean.bin* ファイルも作成されます。
+
+CNN モデルのトレーニングに必
要なソースコードはすべてSINGAに組み込まれています。コードを追åŠ
 ã™ã‚‹å¿…要はありません。
+ジョブ設定ファイル (*job.conf*) 
を指定して、スクリプト(*../../bin/singa-run.sh*) 
を実行します。
+SINGAのコードを変更、または追加
する時は、[プログラミングガイド](programming-guide.html)をご覧くã
 ã•ã„。
+
+#### 並列化なしのトレーニング
+
+Cluster Topology のデフォルト値は、１つの worker と　１つの 
server となっています。
+データとニューラルネットの並列化はされません。
+
+トレーニングを開始するには次のスクリプトを実行します。
+
+    # goto top level folder
+    cd ../../
+    ./bin/singa-run.sh -conf examples/cifar10/job.conf
+
+
+現在、起動中のジョブのリストを表示するには
+
+    ./bin/singa-console.sh list
+
+    JOB ID    |NUM PROCS
+    ----------|-----------
+    24        |1
+
+ジョブの強制終了をするには
+
+    ./bin/singa-console.sh kill JOB_ID
+
+
+ログとジョブの情報は */tmp/singa-log* 
フォルダーに保存されます。
+*conf/singa.conf* ファイルの `log-dir`で変更可能です。
+
+
+#### 非同期、並列トレーニング
+
+    # job.conf
+    ...
+    cluster {
+      nworker_groups: 2
+      nworkers_per_procs: 2
+      workspace: "examples/cifar10/"
+    }
+
+複数の worker グループをローンチすることによって、
+In SINGA, [非同期トレーニング](architecture.html) 
を実行することが出来ます。
+例えば、*job.conf* を上記のように変更します。
+デフォルトでは、１つの worker グループが１つの worker 
を持つよう設定されています。
+上記の設定では、１つのプロセスに２つの worker 
が設定されているので、２つの worker 
グループが同じプロセスとして実行されます。
+結果、インメモリ [Downpour](frameworks.html) 
トレーニングフレームワークとして、実行されます。
+
+ユーザーは、データの分散を気にする必要はありません。
+ランダムオフセットに従い、各 worker 
グループに、データが振り分けられます。
+各 worker は異なるデータパーティションを担当します。
+
+    # job.conf
+    ...
+    neuralnet {
+      layer {
+        ...
+        sharddata_conf {
+          random_skip: 5000
+        }
+      }
+      ...
+    }
+
+スクリプト実行:
+
+    ./bin/singa-run.sh -conf examples/cifar10/job.conf
+
+#### 同期、並列トレーニング
+
+    # job.conf
+    ...
+    cluster {
+      nworkers_per_group: 2
+      nworkers_per_procs: 2
+      workspace: "examples/cifar10/"
+    }
+
+１つのworkerグループとして複数のworkerをローンチすることで
 
[同期トレーニング](architecture.html)を実行することが出来ます。
+例えば、*job.conf* ファイルを上記のように変更します。
+上記の設定では、１つの worker グループに２つの worker 
が設定されました。
+worker 達はグループ内で同期します。
+これは、インメモリ [sandblaster](frameworks.html) 
として実行されます。
+モデルは２つのworkerに分割されます。各レイヤーが２つのworkerに振り分けられます。
+振り分けられたレイヤーはオリジナルのレイヤーと機能は同じですが、特徴インスタンスの数が
 `B/g` になります。
+ここで、`B`はミニバッチのインスタンスの数で、`g`はグループå†
…の worker の数です。
+[別のスキーム](neural-net.html) 
を利用したレイヤー（ニューラルネットワーク）パーティション方法もあります。
+
+他の設定はすべて「並列化なし」の場合と同じです。
+
+    ./bin/singa-run.sh -conf examples/cifar10/job.conf
+
+### クラスタ上でのトレーニング
+
+クラスター設定を変更して、上記トレーニングフレーム
ワークの拡張を行います。
+
+    nworker_per_procs: 1
+
+すべてのプロセスは１つのworkerスレッドを生成します。
+結果、worker 達は異なるプロセス（ノード）内
で生成されます。
+クラスター内のノードを特定するには、*SINGA_ROOT/conf/* の 
*hostfile* の設定が必要です。
+
+e.g.,
+
+    logbase-a01
+    logbase-a02
+
+zookeeper location も設定する必要があります。
+
+e.g.,
+
+    #conf/singa.conf
+    zookeeper_host: "logbase-a01"
+
+スクリプトの実行は「Single ノード 
トレーニング」と同じです。
+
+    ./bin/singa-run.sh -conf examples/cifar10/job.conf
+
+## Mesos　での実行
+
+*working*...
+
+## 次へ
+
+SINGAのコード変更や追加
に関する詳細は、[プログラミングガイド](programming-guide.html)
 をご覧ください。

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+# RBM Example
+
+---
+
+This example uses SINGA to train 4 RBM models and one auto-encoder model over 
the
+[MNIST dataset](http://yann.lecun.com/exdb/mnist/). The auto-encoder model is 
trained
+to reduce the dimensionality of the MNIST image feature. The RBM models are 
trained
+to initialize parameters of the auto-encoder model. This example application is
+from [Hinton's science paper](http://www.cs.toronto.edu/~hinton/science.pdf).
+
+## Running instructions
+
+Running scripts are provided in *SINGA_ROOT/examples/rbm* folder.
+
+The MNIST dataset has 70,000 handwritten digit images. The
+[data preparation](data.html) page
+has details on converting this dataset into SINGA recognizable format. Users 
can
+simply run the following commands to download and convert the dataset.
+
+    # at SINGA_ROOT/examples/mnist/
+    $ cp Makefile.example Makefile
+    $ make download
+    $ make create
+
+The training is separated into two phases, namely pre-training and fine-tuning.
+The pre-training phase trains 4 RBMs in sequence,
+
+    # at SINGA_ROOT/
+    $ ./bin/singa-run.sh -conf examples/rbm/rbm1.conf
+    $ ./bin/singa-run.sh -conf examples/rbm/rbm2.conf
+    $ ./bin/singa-run.sh -conf examples/rbm/rbm3.conf
+    $ ./bin/singa-run.sh -conf examples/rbm/rbm4.conf
+
+The fine-tuning phase trains the auto-encoder by,
+
+    $ ./bin/singa-run.sh -conf examples/rbm/autoencoder.conf
+
+
+## Training details
+
+### RBM1
+
+<img src="../images/example-rbm1.png" align="center" width="200px"/>
+<span><strong>Figure 1 - RBM1.</strong></span>
+
+The neural net structure for training RBM1 is shown in Figure 1.
+The data layer and parser layer provides features for training RBM1.
+The visible layer (connected with parser layer) of RBM1 accepts the image 
feature
+(784 dimension). The hidden layer is set to have 1000 neurons (units).
+These two layers are configured as,
+
+    layer{
+      name: "RBMVis"
+      type: kRBMVis
+      srclayers:"mnist"
+      srclayers:"RBMHid"
+      rbm_conf{
+        hdim: 1000
+      }
+      param{
+        name: "w1"
+        init{
+          type: kGaussian
+          mean: 0.0
+          std: 0.1
+        }
+      }
+      param{
+        name: "b11"
+        init{
+          type: kConstant
+          value: 0.0
+        }
+      }
+    }
+
+    layer{
+      name: "RBMHid"
+      type: kRBMHid
+      srclayers:"RBMVis"
+      rbm_conf{
+        hdim: 1000
+      }
+      param{
+        name: "w1_"
+        share_from: "w1"
+      }
+      param{
+        name: "b12"
+        init{
+          type: kConstant
+          value: 0.0
+        }
+      }
+    }
+
+
+
+For RBM, the weight matrix is shared by the visible and hidden layers. For 
instance,
+`w1` is shared by `vis` and `hid` layers shown in Figure 1. In SINGA, we can 
configure
+the `share_from` field to enable [parameter sharing](param.html)
+as shown above for the param `w1` and `w1_`.
+
+[Contrastive Divergence](train-one-batch.html#contrastive-divergence)
+is configured as the algorithm for [TrainOneBatch](train-one-batch.html).
+Following Hinton's paper, we configure the [updating protocol](updater.html)
+as follows,
+
+    # Updater Configuration
+    updater{
+      type: kSGD
+      momentum: 0.2
+      weight_decay: 0.0002
+      learning_rate{
+        base_lr: 0.1
+        type: kFixed
+      }
+    }
+
+Since the parameters of RBM0 will be used to initialize the auto-encoder, we 
should
+configure the `workspace` field to specify a path for the checkpoint folder.
+For example, if we configure it as,
+
+    cluster {
+      workspace: "examples/rbm/rbm1/"
+    }
+
+Then SINGA will [checkpoint the parameters](checkpoint.html) into 
*examples/rbm/rbm1/*.
+
+### RBM1
+<img src="../images/example-rbm2.png" align="center" width="200px"/>
+<span><strong>Figure 2 - RBM2.</strong></span>
+
+Figure 2 shows the net structure of training RBM2.
+The visible units of RBM2 accept the output from the Sigmoid1 layer. The 
Inner1 layer
+is a  `InnerProductLayer` whose parameters are set to the `w1` and `b12` 
learned
+from RBM1.
+The neural net configuration is (with layers for data layer and parser layer 
omitted).
+
+    layer{
+      name: "Inner1"
+      type: kInnerProduct
+      srclayers:"mnist"
+      innerproduct_conf{
+        num_output: 1000
+      }
+      param{ name: "w1" }
+      param{ name: "b12"}
+    }
+
+    layer{
+      name: "Sigmoid1"
+      type: kSigmoid
+      srclayers:"Inner1"
+    }
+
+    layer{
+      name: "RBMVis"
+      type: kRBMVis
+      srclayers:"Sigmoid1"
+      srclayers:"RBMHid"
+      rbm_conf{
+        hdim: 500
+      }
+      param{
+        name: "w2"
+        ...
+      }
+      param{
+        name: "b21"
+        ...
+      }
+    }
+
+    layer{
+      name: "RBMHid"
+      type: kRBMHid
+      srclayers:"RBMVis"
+      rbm_conf{
+        hdim: 500
+      }
+      param{
+        name: "w2_"
+        share_from: "w2"
+      }
+      param{
+        name: "b22"
+        ...
+      }
+    }
+
+To load w0 and b02 from RBM0's checkpoint file, we configure the 
`checkpoint_path` as,
+
+    checkpoint_path: "examples/rbm/rbm1/checkpoint/step6000-worker0"
+    cluster{
+      workspace: "examples/rbm/rbm2"
+    }
+
+The workspace is changed for checkpointing `w2`, `b21` and `b22` into
+*examples/rbm/rbm2/*.
+
+### RBM3
+
+<img src="../images/example-rbm3.png" align="center" width="200px"/>
+<span><strong>Figure 3 - RBM3.</strong></span>
+
+Figure 3 shows the net structure of training RBM3. In this model, a layer with
+250 units is added as the hidden layer of RBM3. The visible units of RBM3
+accepts output from Sigmoid2 layer. Parameters of Inner1 and Innner2 are set to
+`w1,b12,w2,b22` which can be load from the checkpoint file of RBM2,
+i.e., "examples/rbm/rbm2/".
+
+### RBM4
+
+
+<img src="../images/example-rbm4.png" align="center" width="200px"/>
+<span><strong>Figure 4 - RBM4.</strong></span>
+
+Figure 4 shows the net structure of training RBM4. It is similar to Figure 3,
+but according to [Hinton's science 
paper](http://www.cs.toronto.edu/~hinton/science.pdf), the hidden units of the
+top RBM (RBM4) have stochastic real-valued states drawn from a unit variance
+Gaussian whose mean is determined by the input from the RBM's logistic visible
+units. So we add a `gaussian` field in the RBMHid layer to control the
+sampling distribution (Gaussian or Bernoulli). In addition, this
+RBM has a much smaller learning rate (0.001).  The neural net configuration for
+the RBM4 and the updating protocol is (with layers for data layer and parser
+layer omitted),
+
+    # Updater Configuration
+    updater{
+      type: kSGD
+      momentum: 0.9
+      weight_decay: 0.0002
+      learning_rate{
+        base_lr: 0.001
+        type: kFixed
+      }
+    }
+
+    layer{
+      name: "RBMVis"
+      type: kRBMVis
+      srclayers:"Sigmoid3"
+      srclayers:"RBMHid"
+      rbm_conf{
+        hdim: 30
+      }
+      param{
+        name: "w4"
+        ...
+      }
+      param{
+        name: "b41"
+        ...
+      }
+    }
+
+    layer{
+      name: "RBMHid"
+      type: kRBMHid
+      srclayers:"RBMVis"
+      rbm_conf{
+        hdim: 30
+        gaussian: true
+      }
+      param{
+        name: "w4_"
+        share_from: "w4"
+      }
+      param{
+        name: "b42"
+        ...
+      }
+    }
+
+### Auto-encoder
+In the fine-tuning stage, the 4 RBMs are "unfolded" to form encoder and decoder
+networks that are initialized using the parameters from the previous 4 RBMs.
+
+<img src="../images/example-autoencoder.png" align="center" width="500px"/>
+<span><strong>Figure 5 - Auto-Encoders.</strong></span>
+
+
+Figure 5 shows the neural net structure for training the auto-encoder.
+[Back propagation (kBP)] (train-one-batch.html) is
+configured as the algorithm for `TrainOneBatch`. We use the same cluster
+configuration as RBM models. For updater, we use 
[AdaGrad](updater.html#adagradupdater) algorithm with
+fixed learning rate.
+
+    ### Updater Configuration
+    updater{
+      type: kAdaGrad
+      learning_rate{
+      base_lr: 0.01
+      type: kFixed
+      }
+    }
+
+
+
+According to [Hinton's science 
paper](http://www.cs.toronto.edu/~hinton/science.pdf),
+we configure a EuclideanLoss layer to compute the reconstruction error. The 
neural net
+configuration is (with some of the middle layers omitted),
+
+    layer{ name: "data" }
+    layer{ name:"mnist" }
+    layer{
+      name: "Inner1"
+      param{ name: "w1" }
+      param{ name: "b12" }
+    }
+    layer{ name: "Sigmoid1" }
+    ...
+    layer{
+      name: "Inner8"
+      innerproduct_conf{
+        num_output: 784
+        transpose: true
+      }
+      param{
+        name: "w8"
+        share_from: "w1"
+      }
+      param{ name: "b11" }
+    }
+    layer{ name: "Sigmoid8" }
+
+    # Euclidean Loss Layer Configuration
+    layer{
+      name: "loss"
+      type:kEuclideanLoss
+      srclayers:"Sigmoid8"
+      srclayers:"mnist"
+    }
+
+To load pre-trained parameters from the 4 RBMs' checkpoint file we configure 
`checkpoint_path` as
+
+    ### Checkpoint Configuration
+    checkpoint_path: "examples/rbm/checkpoint/rbm1/checkpoint/step6000-worker0"
+    checkpoint_path: "examples/rbm/checkpoint/rbm2/checkpoint/step6000-worker0"
+    checkpoint_path: "examples/rbm/checkpoint/rbm3/checkpoint/step6000-worker0"
+    checkpoint_path: "examples/rbm/checkpoint/rbm4/checkpoint/step6000-worker0"
+
+
+## Visualization Results
+
+<div>
+<img src="../images/rbm-weight.PNG" align="center" width="300px"/>
+
+<img src="../images/rbm-feature.PNG" align="center" width="300px"/>
+<br/>
+<span><strong>Figure 6 - Bottom RBM weight matrix.</strong></span>
+&nbsp;
+&nbsp;
+&nbsp;
+&nbsp;
+
+<span><strong>Figure 7 - Top layer features.</strong></span>
+</div>
+
+Figure 6 visualizes sample columns of the weight matrix of RBM1, We can see the
+Gabor-like filters are learned. Figure 7 depicts the features extracted from
+the top-layer of the auto-encoder, wherein one point represents one image.
+Different colors represent different digits. We can see that most images are
+well clustered according to the ground truth.

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+# Recurrent Neural Networks for Language Modelling
+
+---
+
+Recurrent Neural Networks (RNN) are widely used for modelling sequential data,
+such as music and sentences.  In this example, we use SINGA to train a
+[RNN 
model](http://www.fit.vutbr.cz/research/groups/speech/publi/2010/mikolov_interspeech2010_IS100722.pdf)
+proposed by Tomas Mikolov for [language 
modeling](https://en.wikipedia.org/wiki/Language_model).
+The training objective (loss) is
+to minimize the [perplexity per 
word](https://en.wikipedia.org/wiki/Perplexity), which
+is equivalent to maximize the probability of predicting the next word given 
the current word in
+a sentence.
+
+Different to the [CNN](cnn.html), [MLP](mlp.html)
+and [RBM](rbm.html) examples which use built-in
+layers(layer) and records(data),
+none of the layers in this example are built-in. Hence users would learn to
+implement their own layers and data records through this example.
+
+## Running instructions
+
+In *SINGA_ROOT/examples/rnnlm/*, scripts are provided to run the training job.
+First, the data is prepared by
+
+    $ cp Makefile.example Makefile
+    $ make download
+    $ make create
+
+Second, to compile the source code under *examples/rnnlm/*, run
+
+    $ make rnnlm
+
+An executable file *rnnlm.bin* will be generated.
+
+Third, the training is started by passing *rnnlm.bin* and the job configuration
+to *singa-run.sh*,
+
+    # at SINGA_ROOT/
+    # export LD_LIBRARY_PATH=.libs:$LD_LIBRARY_PATH
+    $ ./bin/singa-run.sh -exec examples/rnnlm/rnnlm.bin -conf 
examples/rnnlm/job.conf
+
+## Implementations
+
+<img src="../images/rnnlm.png" align="center" width="400px"/>
+<span><strong>Figure 1 - Net structure of the RNN model.</strong></span>
+
+The neural net structure is shown Figure 1.  Word records are loaded by
+`DataLayer`. For every iteration, at most `max_window` word records are
+processed. If a sentence ending character is read, the `DataLayer` stops
+loading immediately. `EmbeddingLayer` looks up a word embedding matrix to 
extract
+feature vectors for words loaded by the `DataLayer`.  These features are 
transformed by the
+`HiddenLayer` which propagates the features from left to right. The
+output feature for word at position k is influenced by words from position 0 to
+k-1.  Finally, `LossLayer` computes the cross-entropy loss (see below)
+by predicting the next word of each word.
+The cross-entropy loss is computed as
+
+`$$L(w_t)=-log P(w_{t+1}|w_t)$$`
+
+Given `$w_t$` the above equation would compute over all words in the 
vocabulary,
+which is time consuming.
+[RNNLM 
Toolkit](https://f25ea9ccb7d3346ce6891573d543960492b92c30.googledrive.com/host/0ByxdPXuxLPS5RFM5dVNvWVhTd0U/rnnlm-0.4b.tgz)
+accelerates the computation as
+
+`$$P(w_{t+1}|w_t) = P(C_{w_{t+1}}|w_t) * P(w_{t+1}|C_{w_{t+1}})$$`
+
+Words from the vocabulary are partitioned into a user-defined number of 
classes.
+The first term on the left side predicts the class of the next word, and
+then predicts the next word given its class. Both the number of classes and
+the words from one class are much smaller than the vocabulary size. The 
probabilities
+can be calculated much faster.
+
+The perplexity per word is computed by,
+
+`$$PPL = 10^{- avg_t log_{10} P(w_{t+1}|w_t)}$$`
+
+### Data preparation
+
+We use a small dataset provided by the [RNNLM 
Toolkit](https://f25ea9ccb7d3346ce6891573d543960492b92c30.googledrive.com/host/0ByxdPXuxLPS5RFM5dVNvWVhTd0U/rnnlm-0.4b.tgz).
+It has 10,000 training sentences, with 71350 words in total and 3720 unique 
words.
+The subsequent steps follow the instructions in
+[Data Preparation](data.html) to convert the
+raw data into records and insert them into data stores.
+
+#### Download source data
+
+    # in SINGA_ROOT/examples/rnnlm/
+    cp Makefile.example Makefile
+    make download
+
+#### Define record format
+
+We define the word record as follows,
+
+    # in SINGA_ROOT/examples/rnnlm/rnnlm.proto
+    message WordRecord {
+      optional string word = 1;
+      optional int32 word_index = 2;
+      optional int32 class_index = 3;
+      optional int32 class_start = 4;
+      optional int32 class_end = 5;
+    }
+
+It includes the word string and its index in the vocabulary.
+Words in the vocabulary are sorted based on their frequency in the training 
dataset.
+The sorted list is cut into 100 sublists such that each sublist has 1/100 total
+word frequency. Each sublist is called a class.
+Hence each word has a `class_index` ([0,100)). The `class_start` is the index
+of the first word in the same class as `word`. The `class_end` is the index of
+the first word in the next class.
+
+#### Create data stores
+
+We use code from RNNLM Toolkit to read words, and sort them into classes.
+The main function in *create_store.cc* first creates word classes based on the 
training
+dataset. Second it calls the following function to create data store for the
+training, validation and test dataset.
+
+    int create_data(const char *input_file, const char *output_file);
+
+`input` is the path to training/validation/testing text file from the RNNLM 
Toolkit, `output` is output store file.
+This function starts with
+
+    singa::io::KVFile store;
+    store.Open(output, signa::io::kCreate);
+
+Then it reads the words one by one. For each word it creates a `WordRecord` 
instance,
+and inserts it into the store,
+
+    int wcnt = 0; // word count
+    WordRecord  wordRecord;
+    while(1) {
+      readWord(wordstr, fin);
+      if (feof(fin)) break;
+      ...// fill in the wordRecord;
+      string val;
+      wordRecord.SerializeToString(&val);
+      int length = snprintf(key, BUFFER_LEN, "%05d", wcnt++);
+      store.Write(string(key, length), val);
+    }
+
+Compilation and running commands are provided in the *Makefile.example*.
+After executing
+
+    make create
+
+*train_data.bin*, *test_data.bin* and *valid_data.bin* will be created.
+
+
+### Layer implementation
+
+4 user-defined layers are implemented for this application.
+Following the guide for implementing [new Layer 
subclasses](layer#implementing-a-new-layer-subclass),
+we extend the [LayerProto](../api/classsinga_1_1LayerProto.html)
+to include the configuration messages of user-defined layers as shown below
+(3 out of the 7 layers have specific configurations),
+
+
+    import "job.proto";     // Layer message for SINGA is defined
+
+    //For implementation of RNNLM application
+    extend singa.LayerProto {
+      optional EmbeddingProto embedding_conf = 101;
+      optional LossProto loss_conf = 102;
+      optional DataProto data_conf = 103;
+    }
+
+In the subsequent sections, we describe the implementation of each layer,
+including its configuration message.
+
+#### RNNLayer
+
+This is the base layer of all other layers for this applications. It is defined
+as follows,
+
+    class RNNLayer : virtual public Layer {
+    public:
+      inline int window() { return window_; }
+    protected:
+      int window_;
+    };
+
+For this application, two iterations may process different number of words.
+Because sentences have different lengths.
+The `DataLayer` decides the effective window size. All other layers call its 
source layers to get the
+effective window size and resets `window_` in `ComputeFeature` function.
+
+#### DataLayer
+
+DataLayer is for loading Records.
+
+    class DataLayer : public RNNLayer, singa::InputLayer {
+     public:
+      void Setup(const LayerProto& proto, const vector<Layer*>& srclayers) 
override;
+      void ComputeFeature(int flag, const vector<Layer*>& srclayers) override;
+      int max_window() const {
+        return max_window_;
+      }
+     private:
+      int max_window_;
+      singa::io::Store* store_;
+    };
+
+The Setup function gets the user configured max window size.
+
+    max_window_ = proto.GetExtension(input_conf).max_window();
+
+The `ComputeFeature` function loads at most max_window records. It could also
+stop when the sentence ending character is encountered.
+
+    ...// shift the last record to the first
+    window_ = max_window_;
+    for (int i = 1; i <= max_window_; i++) {
+      // load record; break if it is the ending character
+    }
+
+The configuration of `DataLayer` is like
+
+    name: "data"
+    user_type: "kData"
+    [data_conf] {
+      path: "examples/rnnlm/train_data.bin"
+      max_window: 10
+    }
+
+#### EmbeddingLayer
+
+This layer gets records from `DataLayer`. For each record, the word index is
+parsed and used to get the corresponding word feature vector from the embedding
+matrix.
+
+The class is declared as follows,
+
+    class EmbeddingLayer : public RNNLayer {
+      ...
+      const std::vector<Param*> GetParams() const override {
+        std::vector<Param*> params{embed_};
+        return params;
+      }
+     private:
+      int word_dim_, vocab_size_;
+      Param* embed_;
+    }
+
+The `embed_` field is a matrix whose values are parameter to be learned.
+The matrix size is `vocab_size_` x `word_dim_`.
+
+The Setup function reads configurations for `word_dim_` and `vocab_size_`. Then
+it allocates feature Blob for `max_window` words and setups `embed_`.
+
+    int max_window = srclayers[0]->data(this).shape()[0];
+    word_dim_ = proto.GetExtension(embedding_conf).word_dim();
+    data_.Reshape(vector<int>{max_window, word_dim_});
+    ...
+    embed_->Setup(vector<int>{vocab_size_, word_dim_});
+
+The `ComputeFeature` function simply copies the feature vector from the 
`embed_`
+matrix into the feature Blob.
+
+    # reset effective window size
+    window_ = datalayer->window();
+    auto records = datalayer->records();
+    ...
+    for (int t = 0; t < window_; t++) {
+      int idx  <- word index
+      Copy(words[t], embed[idx]);
+    }
+
+The `ComputeGradient` function copies back the gradients to the `embed_` 
matrix.
+
+The configuration for `EmbeddingLayer` is like,
+
+    user_type: "kEmbedding"
+    [embedding_conf] {
+      word_dim: 15
+      vocab_size: 3720
+    }
+    srclayers: "data"
+    param {
+      name: "w1"
+      init {
+        type: kUniform
+        low:-0.3
+        high:0.3
+      }
+    }
+
+#### HiddenLayer
+
+This layer unrolls the recurrent connections for at most max_window times.
+The feature for position k is computed based on the feature from the embedding 
layer (position k)
+and the feature at position k-1 of this layer. The formula is
+
+`$$f[k]=\sigma (f[t-1]*W+src[t])$$`
+
+where `$W$` is a matrix with `word_dim_` x `word_dim_` parameters.
+
+If you want to implement a recurrent neural network following our
+design, this layer is of vital importance for you to refer to.
+
+    class HiddenLayer : public RNNLayer {
+      ...
+      const std::vector<Param*> GetParams() const override {
+        std::vector<Param*> params{weight_};
+        return params;
+      }
+    private:
+      Param* weight_;
+    };
+
+The `Setup` function setups the weight matrix as
+
+    weight_->Setup(std::vector<int>{word_dim, word_dim});
+
+The `ComputeFeature` function gets the effective window size (`window_`) from 
its source layer
+i.e., the embedding layer. Then it propagates the feature from position 0 to 
position
+`window_` -1. The detailed descriptions for this process are illustrated as 
follows.
+
+    void HiddenLayer::ComputeFeature() {
+      for(int t = 0; t < window_size; t++){
+        if(t == 0)
+          Copy(data[t], src[t]);
+        else
+          data[t]=sigmoid(data[t-1]*W + src[t]);
+      }
+    }
+
+The `ComputeGradient` function computes the gradient of the loss w.r.t. W and 
the source layer.
+Particularly, for each position k, since data[k] contributes to data[k+1] and 
the feature
+at position k in its destination layer (the loss layer), grad[k] should 
contains the gradient
+from two parts. The destination layer has already computed the gradient from 
the loss layer into
+grad[k]; In the `ComputeGradient` function, we need to add the gradient from 
position k+1.
+
+    void HiddenLayer::ComputeGradient(){
+      ...
+      for (int k = window_ - 1; k >= 0; k--) {
+        if (k < window_ - 1) {
+          grad[k] += dot(grad[k + 1], weight.T()); // add gradient from 
position t+1.
+        }
+        grad[k] =... // compute gL/gy[t], y[t]=data[t-1]*W+src[t]
+      }
+      gweight = dot(data.Slice(0, window_-1).T(), grad.Slice(1, window_));
+      Copy(gsrc, grad);
+    }
+
+After the loop, we get the gradient of the loss w.r.t y[k], which is used to
+compute the gradient of W and the src[k].
+
+#### LossLayer
+
+This layer computes the cross-entropy loss and the `$log_{10}P(w_{t+1}|w_t)$` 
(which
+could be averaged over all words by users to get the PPL value).
+
+There are two configuration fields to be specified by users.
+
+    message LossProto {
+      optional int32 nclass = 1;
+      optional int32 vocab_size = 2;
+    }
+
+There are two weight matrices to be learned
+
+    class LossLayer : public RNNLayer {
+      ...
+     private:
+      Param* word_weight_, *class_weight_;
+    }
+
+The ComputeFeature function computes the two probabilities respectively.
+
+`$$P(C_{w_{t+1}}|w_t) = Softmax(w_t * class\_weight_)$$`
+`$$P(w_{t+1}|C_{w_{t+1}}) = Softmax(w_t * 
word\_weight[class\_start:class\_end])$$`
+
+`$w_t$` is the feature from the hidden layer for the k-th word, its ground 
truth
+next word is `$w_{t+1}$`.  The first equation computes the probability 
distribution over all
+classes for the next word. The second equation computes the
+probability distribution over the words in the ground truth class for the next 
word.
+
+The ComputeGradient function computes the gradient of the source layer
+(i.e., the hidden layer) and the two weight matrices.
+
+### Updater Configuration
+
+We employ kFixedStep type of the learning rate change method and the
+configuration is as follows. We decay the learning rate once the performance 
does
+not increase on the validation dataset.
+
+    updater{
+      type: kSGD
+      learning_rate {
+        type: kFixedStep
+        fixedstep_conf:{
+          step:0
+          step:48810
+          step:56945
+          step:65080
+          step:73215
+          step_lr:0.1
+          step_lr:0.05
+          step_lr:0.025
+          step_lr:0.0125
+          step_lr:0.00625
+        }
+      }
+    }
+
+### TrainOneBatch() Function
+
+We use BP (BackPropagation) algorithm to train the RNN model here. The
+corresponding configuration can be seen below.
+
+    # In job.conf file
+    train_one_batch {
+      alg: kBackPropagation
+    }
+
+### Cluster Configuration
+
+The default cluster configuration can be used, i.e., single worker and single 
server
+in a single process.

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+# Performance Test and Feature Extraction
+
+----
+
+Once SINGA finishes the training of a model, it would checkpoint the model 
parameters
+into disk files under the [checkpoint folder](checkpoint.html). Model 
parameters can also be dumped
+into this folder periodically during training if the
+[checkpoint configuration[(checkpoint.html) fields are set. With the checkpoint
+files, we can load the model parameters to conduct performance test, feature 
extraction and prediction
+against new data.
+
+To load the model parameters from checkpoint files, we need to add the paths of
+checkpoint files in the job configuration file
+
+    checkpoint_path: PATH_TO_CHECKPOINT_FILE1
+    checkpoint_path: PATH_TO_CHECKPOINT_FILE2
+    ...
+
+The new dataset is configured by specifying the ``test_step`` and the data 
input
+layer, e.g. the following configuration is for a dataset with 100*100 
instances.
+
+    test_steps: 100
+    net {
+      layer {
+        name: "input"
+        store_conf {
+          backend: "kvfile"
+          path: PATH_TO_TEST_KVFILE
+          batchsize: 100
+        }
+      }
+      ...
+    }
+
+## Performance Test
+
+This application is to test the performance, e.g., accuracy, of the previously
+trained model. Depending on the application, the test data may have ground 
truth
+labels or not. For example, if the model is trained for image classification,
+the test images must have ground truth labels to calculate the accuracy; if the
+model is an auto-encoder, the performance could be measured by reconstruction 
error, which
+does not require extra labels. For both cases, there would be a layer that 
calculates
+the performance, e.g., the `SoftmaxLossLayer`.
+
+The job configuration file for the cifar10 example can be used directly for 
testing after
+adding the checkpoint path. The running command is
+
+
+    $ ./bin/singa-run.sh -conf examples/cifar10/job.conf -test
+
+The performance would be output on the screen like,
+
+
+    Load from checkpoint file examples/cifar10/checkpoint/step50000-worker0
+    accuracy = 0.728000, loss = 0.807645
+
+## Feature extraction
+
+Since deep learning models are good at learning features, feature extraction 
for
+is a major functionality of deep learning models, e.g., we can extract features
+from the fully connected layers of 
[AlexNet](www.cs.toronto.edu/~fritz/absps/imagenet.pdf) as image features for 
image retrieval.
+To extract the features from one layer, we simply add an output layer after 
that layer.
+For instance, to extract the fully connected (with name `ip1`) layer of the 
cifar10 example model,
+we replace the `SoftmaxLossLayer` with a `CSVOutputLayer` which extracts the 
features into a CSV file,
+
+    layer {
+      name: "ip1"
+    }
+    layer {
+      name: "output"
+      type: kCSVOutput
+      srclayers: "ip1"
+      store_conf {
+        backend: "textfile"
+        path: OUTPUT_FILE_PATH
+      }
+    }
+
+The input layer and test steps, and the running command are the same as in 
*Performance Test* section.
+
+## Label Prediction
+
+If the output layer is connected to a layer that predicts labels of images,
+the output layer would then write the prediction results into files.
+SINGA provides two built-in layers for generating prediction results, namely,
+
+* SoftmaxLayer, generates probabilities of each candidate labels.
+* ArgSortLayer, sorts labels according to probabilities in descending order 
and keep topk labels.
+
+By connecting the two layers with the previous layer and the output layer, we 
can
+extract the predictions of each instance. For example,
+
+    layer {
+      name: "feature"
+      ...
+    }
+    layer {
+      name: "softmax"
+      type: kSoftmax
+      srclayers: "feature"
+    }
+    layer {
+      name: "prediction"
+      type: kArgSort
+      srclayers: "softmax"
+      argsort_conf {
+        topk: 5
+      }
+    }
+    layer {
+      name: "output"
+      type: kCSVOutput
+      srclayers: "prediction"
+      store_conf {}
+    }
+
+The top-5 labels of each instance will be written as one line of the output 
CSV file.
+Currently, above layers cannot co-exist with the loss layers used for training.
+Please comment out the loss layers for extracting prediction results.

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+# Train-One-Batch
+
+---
+
+For each SGD iteration, every worker calls the `TrainOneBatch` function to
+compute gradients of parameters associated with local layers (i.e., layers
+dispatched to it).  SINGA has implemented two algorithms for the
+`TrainOneBatch` function. Users select the corresponding algorithm for
+their model in the configuration.
+
+## Basic user guide
+
+### Back-propagation
+
+[BP algorithm](http://yann.lecun.com/exdb/publis/pdf/lecun-98b.pdf) is used for
+computing gradients of feed-forward models, e.g., [CNN](cnn.html)
+and [MLP](mlp.html), and [RNN](rnn.html) models in SINGA.
+
+
+    # in job.conf
+    alg: kBP
+
+To use the BP algorithm for the `TrainOneBatch` function, users just simply
+configure the `alg` field with `kBP`. If a neural net contains user-defined
+layers, these layers must be implemented properly be to consistent with the
+implementation of the BP algorithm in SINGA (see below).
+
+
+### Contrastive Divergence
+
+[CD algorithm](http://www.cs.toronto.edu/~fritz/absps/nccd.pdf) is used for
+computing gradients of energy models like RBM.
+
+    # job.conf
+    alg: kCD
+    cd_conf {
+      cd_k: 2
+    }
+
+To use the CD algorithm for the `TrainOneBatch` function, users just configure
+the `alg` field to `kCD`. Uses can also configure the Gibbs sampling steps in
+the CD algorthm through the `cd_k` field. By default, it is set to 1.
+
+
+
+## Advanced user guide
+
+### Implementation of BP
+
+The BP algorithm is implemented in SINGA following the below pseudo code,
+
+    BPTrainOnebatch(step, net) {
+      // forward propagate
+      foreach layer in net.local_layers() {
+        if IsBridgeDstLayer(layer)
+          recv data from the src layer (i.e., BridgeSrcLayer)
+        foreach param in layer.params()
+          Collect(param) // recv response from servers for last update
+
+        layer.ComputeFeature(kForward)
+
+        if IsBridgeSrcLayer(layer)
+          send layer.data_ to dst layer
+      }
+      // backward propagate
+      foreach layer in reverse(net.local_layers) {
+        if IsBridgeSrcLayer(layer)
+          recv gradient from the dst layer (i.e., BridgeDstLayer)
+          recv response from servers for last update
+
+        layer.ComputeGradient()
+        foreach param in layer.params()
+          Update(step, param) // send param.grad_ to servers
+
+        if IsBridgeDstLayer(layer)
+          send layer.grad_ to src layer
+      }
+    }
+
+
+It forwards features through all local layers (can be checked by layer
+partition ID and worker ID) and backwards gradients in the reverse order.
+[BridgeSrcLayer](layer.html#bridgesrclayer--bridgedstlayer)
+(resp. `BridgeDstLayer`) will be blocked until the feature (resp.
+gradient) from the source (resp. destination) layer comes. Parameter gradients
+are sent to servers via `Update` function. Updated parameters are collected via
+`Collect` function, which will be blocked until the parameter is updated.
+[Param](param.html) objects have versions, which can be used to
+check whether the `Param` objects have been updated or not.
+
+Since RNN models are unrolled into feed-forward models, users need to implement
+the forward propagation in the recurrent layer's `ComputeFeature` function,
+and implement the backward propagation in the recurrent layer's 
`ComputeGradient`
+function. As a result, the whole `TrainOneBatch` runs
+[back-propagation through time 
(BPTT)](https://en.wikipedia.org/wiki/Backpropagation_through_time)  algorithm.
+
+### Implementation of CD
+
+The CD algorithm is implemented in SINGA following the below pseudo code,
+
+    CDTrainOneBatch(step, net) {
+      # positive phase
+      foreach layer in net.local_layers()
+        if IsBridgeDstLayer(layer)
+          recv positive phase data from the src layer (i.e., BridgeSrcLayer)
+        foreach param in layer.params()
+          Collect(param)  // recv response from servers for last update
+        layer.ComputeFeature(kPositive)
+        if IsBridgeSrcLayer(layer)
+          send positive phase data to dst layer
+
+      # negative phase
+      foreach gibbs in [0...layer_proto_.cd_k]
+        foreach layer in net.local_layers()
+          if IsBridgeDstLayer(layer)
+            recv negative phase data from the src layer (i.e., BridgeSrcLayer)
+          layer.ComputeFeature(kPositive)
+          if IsBridgeSrcLayer(layer)
+            send negative phase data to dst layer
+
+      foreach layer in net.local_layers()
+        layer.ComputeGradient()
+        foreach param in layer.params
+          Update(param)
+    }
+
+Parameter gradients are computed after the positive phase and negative phase.
+
+### Implementing a new algorithm
+
+SINGA implements BP and CD by creating two subclasses of
+the [Worker](../api/classsinga_1_1Worker.html) class:
+[BPWorker](../api/classsinga_1_1BPWorker.html)'s `TrainOneBatch` function 
implements the BP
+algorithm; [CDWorker](../api/classsinga_1_1CDWorker.html)'s `TrainOneBatch` 
function implements the CD
+algorithm. To implement a new algorithm for the `TrainOneBatch` function, users
+need to create a new subclass of the `Worker`, e.g.,
+
+    class FooWorker : public Worker {
+      void TrainOneBatch(int step, shared_ptr<NeuralNet> net, Metric* perf) 
override;
+      void TestOneBatch(int step, Phase phase, shared_ptr<NeuralNet> net, 
Metric* perf) override;
+    };
+
+The `FooWorker` must implement the above two functions for training one
+mini-batch and testing one mini-batch. The `perf` argument is for collecting
+training or testing performance, e.g., the objective loss or accuracy. It is
+passed to the `ComputeFeature` function of each layer.
+
+Users can define some fields for users to configure
+
+    # in user.proto
+    message FooWorkerProto {
+      optional int32 b = 1;
+    }
+
+    extend JobProto {
+      optional FooWorkerProto foo_conf = 101;
+    }
+
+    # in job.proto
+    JobProto {
+      ...
+      extension 101..max;
+    }
+
+It is similar as [adding configuration fields for a new 
layer](layer.html#implementing-a-new-layer-subclass).
+
+To use `FooWorker`, users need to register it in the 
[main.cc](programming-guide.html)
+and configure the `alg` and `foo_conf` fields,
+
+    # in main.cc
+    const int kFoo = 3; // worker ID, must be different to that of CDWorker 
and BPWorker
+    driver.RegisterWorker<FooWorker>(kFoo);
+
+    # in job.conf
+    ...
+    alg: 3
+    [foo_conf] {
+      b = 4;
+    }

Added: incubator/singa/site/trunk/content/markdown/v0.2.0/jp/updater.md
URL: 
http://svn.apache.org/viewvc/incubator/singa/site/trunk/content/markdown/v0.2.0/jp/updater.md?rev=1738695&view=auto
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--- incubator/singa/site/trunk/content/markdown/v0.2.0/jp/updater.md (added)
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+# Updater
+
+---
+
+Every server in SINGA has an [Updater](../api/classsinga_1_1Updater.html)
+instance that updates parameters based on gradients.
+In this page, the *Basic user guide* describes the configuration of an updater.
+The *Advanced user guide* present details on how to implement a new updater 
and a new
+learning rate changing method.
+
+## Basic user guide
+
+There are many different parameter updating protocols (i.e., subclasses of
+`Updater`). They share some configuration fields like
+
+* `type`, an integer for identifying an updater;
+* `learning_rate`, configuration for the
+[LRGenerator](../api/classsinga_1_1LRGenerator.html) which controls the 
learning rate.
+* `weight_decay`, the co-efficient for [L2 * 
regularization](http://deeplearning.net/tutorial/gettingstarted.html#regularization).
+* 
[momentum](http://ufldl.stanford.edu/tutorial/supervised/OptimizationStochasticGradientDescent/).
+
+If you are not familiar with the above terms, you can get their meanings in
+[this page provided by 
Karpathy](http://cs231n.github.io/neural-networks-3/#update).
+
+### Configuration of built-in updater classes
+
+#### Updater
+The base `Updater` implements the [vanilla SGD 
algorithm](http://cs231n.github.io/neural-networks-3/#sgd).
+Its configuration type is `kSGD`.
+Users need to configure at least the `learning_rate` field.
+`momentum` and `weight_decay` are optional fields.
+
+    updater{
+      type: kSGD
+      momentum: float
+      weight_decay: float
+      learning_rate {
+        ...
+      }
+    }
+
+#### AdaGradUpdater
+
+It inherits the base `Updater` to implement the
+[AdaGrad](http://www.magicbroom.info/Papers/DuchiHaSi10.pdf) algorithm.
+Its type is `kAdaGrad`.
+`AdaGradUpdater` is configured similar to `Updater` except
+that `momentum` is not used.
+
+#### NesterovUpdater
+
+It inherits the base `Updater` to implements the
+[Nesterov](http://arxiv.org/pdf/1212.0901v2.pdf) (section 3.5) updating 
protocol.
+Its type is `kNesterov`.
+`learning_rate` and `momentum` must be configured. `weight_decay` is an
+optional configuration field.
+
+#### RMSPropUpdater
+
+It inherits the base `Updater` to implements the
+[RMSProp algorithm](http://cs231n.github.io/neural-networks-3/#sgd) proposed by
+[Hinton](http://www.cs.toronto.edu/%7Etijmen/csc321/slides/lecture_slides_lec6.pdf)(slide
 29).
+Its type is `kRMSProp`.
+
+    updater {
+      type: kRMSProp
+      rmsprop_conf {
+       rho: float # [0,1]
+      }
+    }
+
+
+### Configuration of learning rate
+
+The `learning_rate` field is configured as,
+
+    learning_rate {
+      type: ChangeMethod
+      base_lr: float  # base/initial learning rate
+      ... # fields to a specific changing method
+    }
+
+The common fields include `type` and `base_lr`. SINGA provides the following
+`ChangeMethod`s.
+
+#### kFixed
+
+The `base_lr` is used for all steps.
+
+#### kLinear
+
+The updater should be configured like
+
+    learning_rate {
+      base_lr:  float
+      linear_conf {
+        freq: int
+        final_lr: float
+      }
+    }
+
+Linear interpolation is used to change the learning rate,
+
+    lr = (1 - step / freq) * base_lr + (step / freq) * final_lr
+
+#### kExponential
+
+The udapter should be configured like
+
+    learning_rate {
+      base_lr: float
+      exponential_conf {
+        freq: int
+      }
+    }
+
+The learning rate for `step` is
+
+    lr = base_lr / 2^(step / freq)
+
+#### kInverseT
+
+The updater should be configured like
+
+    learning_rate {
+      base_lr: float
+      inverset_conf {
+        final_lr: float
+      }
+    }
+
+The learning rate for `step` is
+
+    lr = base_lr / (1 + step / final_lr)
+
+#### kInverse
+
+The updater should be configured like
+
+    learning_rate {
+      base_lr: float
+      inverse_conf {
+        gamma: float
+        pow: float
+      }
+    }
+
+
+The learning rate for `step` is
+
+    lr = base_lr * (1 + gamma * setp)^(-pow)
+
+
+#### kStep
+
+The updater should be configured like
+
+    learning_rate {
+      base_lr : float
+      step_conf {
+        change_freq: int
+        gamma: float
+      }
+    }
+
+
+The learning rate for `step` is
+
+    lr = base_lr * gamma^ (step / change_freq)
+
+#### kFixedStep
+
+The updater should be configured like
+
+    learning_rate {
+      fixedstep_conf {
+        step: int
+        step_lr: float
+
+        step: int
+        step_lr: float
+
+        ...
+      }
+    }
+
+Denote the i-th tuple as (step[i], step_lr[i]), then the learning rate for
+`step` is,
+
+    step_lr[k]
+
+where step[k] is the smallest number that is larger than `step`.
+
+
+## Advanced user guide
+
+### Implementing a new Updater subclass
+
+The base Updater class has one virtual function,
+
+    class Updater{
+     public:
+      virtual void Update(int step, Param* param, float grad_scale = 1.0f) = 0;
+
+     protected:
+      UpdaterProto proto_;
+      LRGenerator lr_gen_;
+    };
+
+It updates the values of the `param` based on its gradients. The `step`
+argument is for deciding the learning rate which may change through time
+(step). `grad_scale` scales the original gradient values. This function is
+called by servers once it receives all gradients for the same `Param` object.
+
+To implement a new Updater subclass, users must override the `Update` function.
+
+    class FooUpdater : public Updater {
+      void Update(int step, Param* param, float grad_scale = 1.0f) override;
+    };
+
+Configuration of this new updater can be declared similar to that of a new
+layer,
+
+    # in user.proto
+    FooUpdaterProto {
+      optional int32 c = 1;
+    }
+
+    extend UpdaterProto {
+      optional FooUpdaterProto fooupdater_conf= 101;
+    }
+
+The new updater should be registered in the
+[main function](programming-guide.html)
+
+    driver.RegisterUpdater<FooUpdater>("FooUpdater");
+
+Users can then configure the job as
+
+    # in job.conf
+    updater {
+      user_type: "FooUpdater"  # must use user_type with the same string 
identifier as the one used for registration
+      fooupdater_conf {
+        c : 20;
+      }
+    }
+
+### Implementing a new LRGenerator subclass
+
+The base `LRGenerator` is declared as,
+
+    virtual float Get(int step);
+
+To implement a subclass, e.g., `FooLRGen`, users should declare it like
+
+    class FooLRGen : public LRGenerator {
+     public:
+      float Get(int step) override;
+    };
+
+Configuration of `FooLRGen` can be defined using a protocol message,
+
+    # in user.proto
+    message FooLRProto {
+     ...
+    }
+
+    extend LRGenProto {
+      optional FooLRProto foolr_conf = 101;
+    }
+
+The configuration is then like,
+
+    learning_rate {
+      user_type : "FooLR" # must use user_type with the same string identifier 
as the one used for registration
+      base_lr: float
+      foolr_conf {
+        ...
+      }
+    }
+
+Users have to register this subclass in the main function,
+
+      driver.RegisterLRGenerator<FooLRGen, std::string>("FooLR")