Added: websites/staging/singa/trunk/content/v0.3.0/frameworks.html
==============================================================================
--- websites/staging/singa/trunk/content/v0.3.0/frameworks.html (added)
+++ websites/staging/singa/trunk/content/v0.3.0/frameworks.html Wed Apr 20 
05:12:03 2016
@@ -0,0 +1,431 @@
+<!DOCTYPE html>
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+                                                                               
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+                
+      <li>
+  
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+          <span class="none"></span>
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+            </li>
+            </ul>
+                
+                    
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+          <hr />
+
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+                                                                               
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title="apache-incubator" class="builtBy">
+        <img class="builtBy"  alt="Apache Incubator" 
src="http://incubator.apache.org/images/egg-logo.png";    />
+      </a>
+                      </div>
+          </div>
+        </div>
+        
+                        
+        <div id="bodyColumn"  class="span10" >
+                                  
+            <h1>Distributed Training Framework</h1>
+<hr />
+<div class="section">
+<h2><a name="Cluster_Topology_Configuration"></a>Cluster Topology 
Configuration</h2>
+<p>Here we describe how to configure SINGA&#x2019;s cluster topology to 
support different distributed training frameworks. The cluster topology is 
configured in the <tt>cluster</tt> field in <tt>JobProto</tt>. The 
<tt>cluster</tt> is of type <tt>ClusterProto</tt>:</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">message ClusterProto {
+  optional int32 nworker_groups = 1;
+  optional int32 nserver_groups = 2;
+  optional int32 nworkers_per_group = 3 [default = 1];
+  optional int32 nservers_per_group = 4 [default = 1];
+  optional int32 nworkers_per_procs = 5 [default = 1];
+  optional int32 nservers_per_procs = 6 [default = 1];
+
+  // servers and workers in different processes?
+  optional bool server_worker_separate = 20 [default = false];
+
+  ......
+}
+</pre></div></div>
+<p>The mostly used fields are as follows:</p>
+
+<ul>
+  
+<li><tt>nworkers_per_group</tt> and <tt>nworkers_per_procs</tt>:  decide the 
partitioning of worker side ParamShard.</li>
+  
+<li><tt>nservers_per_group</tt> and <tt>nservers_per_procs</tt>:  decide the 
partitioning of server side ParamShard.</li>
+  
+<li><tt>server_worker_separate</tt>:  separate servers and workers in 
different processes.</li>
+</ul></div>
+<div class="section">
+<h2><a name="Different_Training_Frameworks"></a>Different Training 
Frameworks</h2>
+<p>In SINGA, worker groups run asynchronously and workers within one group run 
synchronously. Users can leverage this general design to run both 
<b>synchronous</b> and <b>asynchronous</b> training frameworks. Here we 
illustrate how to configure popular distributed training frameworks in 
SINGA.</p>
+<p><img src="../images/frameworks.png" style="width: 800px" alt="" /> 
+<p><b> Fig.1 - Training frameworks in SINGA</b></p>
+<div class="section">
+<h3><a name="Sandblaster"></a>Sandblaster</h3>
+<p>This is a <b>synchronous</b> framework used by Google Brain. Fig.2(a) shows 
the Sandblaster framework implemented in SINGA. Its configuration is as 
follows:</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">cluster {
+    nworker_groups: 1
+    nserver_groups: 1
+    nworkers_per_group: 3
+    nservers_per_group: 2
+    server_worker_separate: true
+}
+</pre></div></div>
+<p>A single server group is launched to handle all requests from workers. A 
worker computes on its partition of the model, and only communicates with 
servers handling related parameters.</p></div>
+<div class="section">
+<h3><a name="AllReduce"></a>AllReduce</h3>
+<p>This is a <b>synchronous</b> framework used by Baidu&#x2019;s DeepImage. 
Fig.2(b) shows the AllReduce framework implemented in SINGA. Its configuration 
is as follows:</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">cluster {
+    nworker_groups: 1
+    nserver_groups: 1
+    nworkers_per_group: 3
+    nservers_per_group: 3
+    server_worker_separate: false
+}
+</pre></div></div>
+<p>We bind each worker with a server on the same node, so that each node is 
responsible for maintaining a partition of parameters and collecting updates 
from all other nodes.</p></div>
+<div class="section">
+<h3><a name="Downpour"></a>Downpour</h3>
+<p>This is a <b>asynchronous</b> framework used by Google Brain. Fig.2(c) 
shows the Downpour framework implemented in SINGA. Its configuration is as 
follows:</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">cluster {
+    nworker_groups: 2
+    nserver_groups: 1
+    nworkers_per_group: 2
+    nservers_per_group: 2
+    server_worker_separate: true
+}
+</pre></div></div>
+<p>Similar to the synchronous Sandblaster, all workers send requests to a 
global server group. We divide workers into several worker groups, each running 
independently and working on parameters from the last <i>update</i> 
response.</p></div>
+<div class="section">
+<h3><a name="Distributed_Hogwild"></a>Distributed Hogwild</h3>
+<p>This is a <b>asynchronous</b> framework used by Caffe. Fig.2(d) shows the 
Distributed Hogwild framework implemented in SINGA. Its configuration is as 
follows:</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">cluster {
+    nworker_groups: 3
+    nserver_groups: 3
+    nworkers_per_group: 1
+    nservers_per_group: 1
+    server_worker_separate: false
+}
+</pre></div></div>
+<p>Each node contains a complete server group and a complete worker group. 
Parameter updates are done locally, so that communication cost during each 
training step is minimized. However, the server group must periodically 
synchronize with neighboring groups to improve the training 
convergence.</p></div></div>
+                  </div>
+            </div>
+          </div>
+
+    <hr/>
+
+    <footer>
+            <div class="container-fluid">
+                      <div class="row-fluid">
+                                                                          
+<p>Copyright © 2015 The Apache Software Foundation. All rights reserved. 
Apache Singa, Apache, the Apache feather logo, and the Apache Singa project 
logos are trademarks of The Apache Software Foundation. All other marks 
mentioned may be trademarks or registered trademarks of their respective 
owners.</p>
+                          </div>
+
+        
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+    </footer>
+        </body>
+</html>

Added: websites/staging/singa/trunk/content/v0.3.0/general-rnn.html
==============================================================================
--- websites/staging/singa/trunk/content/v0.3.0/general-rnn.html (added)
+++ websites/staging/singa/trunk/content/v0.3.0/general-rnn.html Wed Apr 20 
05:12:03 2016
@@ -0,0 +1,473 @@
+<!DOCTYPE html>
+<!--
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+ | Rendered using Apache Maven Fluido Skin 1.4
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+</li>
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+</li>
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+      </li>
+                  </ul>
+          
+          
+          
+                   
+                      </div>
+          
+        </div>
+      </div>
+    </div>
+    
+        <div class="container-fluid">
+          <div id="banner">
+        <div class="pull-left">
+                                                  <a href="../index.html" 
id="bannerLeft" title="Apache SINGA">
+                                                                               
                 <img src="../images/singa-logo.png"  alt="Apache SINGA"/>
+                </a>
+                      </div>
+        <div class="pull-right">              <div id="bannerRight">
+                                                                               
                 <img src="../images/singa-title.png"  alt="Apache SINGA"/>
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+                    <a href="../index.html" title="Apache SINGA">
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+                    <span class="divider">/</span>
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+        <li class="active ">RNN in SINGA</li>
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+                    
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+          <span class="none"></span>
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+          <span class="none"></span>
+        SINGA Team</a>
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class="externalLink" title="Apache Software Foundation">
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+        Apache Software Foundation</a>
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+                
+      <li>
+  
+                          <a 
href="http://www.comp.nus.edu.sg/~dbsystem/singa/"; class="externalLink" 
title="NUS Site">
+          <span class="none"></span>
+        NUS Site</a>
+            </li>
+            </ul>
+                
+                    
+                
+          <hr />
+
+           <div id="poweredBy">
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title="apache-incubator" class="builtBy">
+        <img class="builtBy"  alt="Apache Incubator" 
src="http://incubator.apache.org/images/egg-logo.png";    />
+      </a>
+                      </div>
+          </div>
+        </div>
+        
+                        
+        <div id="bodyColumn"  class="span10" >
+                                  
+            <h1>RNN in SINGA</h1>
+<hr />
+<p>Recurrent neural networks (RNN) are widely used for modelling sequential 
data, e.g., natural language sentences. In this page, we describe how to 
implement a RNN application (or model) using SINGA built-in RNN layers. We will 
use the <a class="externalLink" 
href="https://github.com/karpathy/char-rnn";>char-rnn modle</a> as an example, 
which trains over setences or source code, with each character as an input 
unit. Particularly, we will train a RNN using GRU over <a class="externalLink" 
href="http://cs.stanford.edu/people/karpathy/char-rnn/";>Linux kernel source 
code</a>. After training, we expect to generate meaningful code from the model, 
like the one shown by <a class="externalLink" 
href="http://karpathy.github.io/2015/05/21/rnn-effectiveness/";>Karpathy</a>. 
There is a <a href="rnn.html">vanilla RNN example</a> for language modelling 
using user defined RNN layers, which is different to using built-in RNN layers 
discribed in this page.</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">/*
+ * If this error is set, we will need anything right after that BSD.
+ */
+static void action_new_function(struct s_stat_info *wb)
+{
+  unsigned long flags;
+  int lel_idx_bit = e-&gt;edd, *sys &amp; ~((unsigned long) *FIRST_COMPAT);
+  buf[0] = 0xFFFFFFFF &amp; (bit &lt;&lt; 4);
+  min(inc, slist-&gt;bytes);
+  printk(KERN_WARNING &quot;Memory allocated %02x/%02x, &quot;
+      &quot;original MLL instead\n&quot;),
+    min(min(multi_run - s-&gt;len, max) * num_data_in),
+    frame_pos, sz + first_seg);
+  div_u64_w(val, inb_p);
+  spin_unlock(&amp;disk-&gt;queue_lock);
+  mutex_unlock(&amp;s-&gt;sock-&gt;mutex);
+  mutex_unlock(&amp;func-&gt;mutex);
+  return disassemble(info-&gt;pending_bh);
+}
+</pre></div></div>
+<div class="section">
+<h2><a name="User_configuration"></a>User configuration</h2>
+<p>The major diffences to the configuration of other models, e.g., 
feed-forward models include,</p>
+
+<ol style="list-style-type: decimal">
+  
+<li>the training algorithm should be changed to BPTT (back-propagation through 
time).</li>
+  
+<li>the layers and their connections should be configured differently.</li>
+</ol>
+<p>The train one batch algorithm can be simply configured as</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">train_one_batch {
+  alg: kBPTT
+}
+</pre></div></div>
+<p>Next, we introduce the configuration of the neural net.</p>
+<p><img src="../images/char-rnn.png" style="width: 550px" alt="" /> 
+<p><b> Fig.1 - Illustration of the structure of the Char-RNN model</b></p>
+<p>Fig.1 illustrates the net structure of the char-rnn model. The input layer 
buffers all training data (the Linux kernel code is about 6MB). For each 
iteration, it reads <tt>unroll_len +1</tt> (<tt>unroll_len</tt> is configured 
by users) successive characters, e.g., &#x201c;int a;&#x201d;, and passes the 
first <tt>unroll_len</tt> characters to <tt>OneHotLayer</tt>s (one per layer). 
Every <tt>OneHotLayer</tt> converts its character into the one-hot vector 
representation. The input layer passes the last <tt>unroll_len</tt> characters 
as labels to the <tt>RNNLabelLayer</tt> (the label of the i-th character is the 
i+1 character, i.e., the objective is to predict the next character). Each 
<tt>GRULayer</tt> receives an one-hot vector and the hidden feature vector from 
its precedent layer. After some feature transformation, its own feature vector 
is passed to an inner-product layer and its successive <tt>GRULayer</tt>. The 
i-th SoftmaxLossLayer measures the cross-entropy loss for predicti
 ng the i-th character. According to Karpathy, there could be another stack of 
<tt>GRULayer</tt>s connecting the first stack of <tt>GRULayer</tt>s, which 
improves the performance if there is enough training data. The layer 
configuration is similar to that for other models, e.g., feed-forward models. 
The major difference is on the connection configuration.</p>
+<div class="section">
+<h3><a name="Unrolling_length"></a>Unrolling length</h3>
+<p>To model the long dependency, recurrent layers need to be unrolled many 
times, denoted as <tt>unroll_len</tt> (i.e., 50). According to our unified 
neural net representation, the neural net should have configurations for 
<tt>unroll_len</tt> recurrent layers. It is tedious to let users configure 
these layers manually. Hence, SINGA makes it a configuration field for each 
layer. For example, to unroll the <tt>GRULayer</tt>, users just configure it 
as,</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">layer {
+  type: kGRU
+  unroll_len: 50
+}
+</pre></div></div>
+<p>Not only the <tt>GRULayer</tt> is unrolled, other layers like 
<tt>InnerProductLayer</tt> and <tt>SoftmaxLossLayer</tt>, are also unrolled. To 
simplify the configuration, SINGA provides a <tt>unroll_len</tt> field in the 
net configuration, which sets the <tt>unroll_len</tt> of each layer 
configuration if the <tt>unroll_len</tt> is not configured explicitly for that 
layer. For instance, SINGA would set the <tt>unroll_len</tt> of the 
<tt>GRULayer</tt> to 50 implicitly for the following configuration.</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">net {
+  unroll_len: 50
+   layer {
+     type: kCharRNNInput
+     unroll_len: 1  // configure it explicitly
+   }
+   layer {
+     type: kGRU
+     // no configuration for unroll_len
+    }
+ }
+</pre></div></div></div>
+<div class="section">
+<h3><a name="ConnectionType"></a>ConnectionType</h3>
+<p><img src="http://karpathy.github.io/assets/rnn/diags.jpeg"; style="width: 
550px" alt="" /> 
+<p><b> Fig.1 - Different RNN structures from <a class="externalLink" 
href="http://karpathy.github.io/2015/05/21/rnn-effectiveness/";>Karpathy</a></b></p>
+<p>There would be many types of connections between layers in RNN models as 
shown by Karpathy in Fig.2. For each <tt>srclayer</tt>, there is a 
connection_type for it. Taking the i-th <tt>srclayer</tt> as an example, if its 
connection type is,</p>
+
+<ul>
+  
+<li>kOneToOne, then each unrolled layer is connected with one unrolled layer 
from the i-th <tt>srclayer</tt>.</li>
+  
+<li>kOneToALL, then each unrolled layer is connected with all unrolled layers 
from the i-th <tt>srclayer</tt>.</li>
+</ul></div></div>
+<div class="section">
+<h2><a name="Implementation"></a>Implementation</h2>
+<div class="section">
+<h3><a name="Neural_net_configuration_preprocessing"></a>Neural net 
configuration preprocessing</h3>
+<p>User configured neural net is preprocessed to unroll the recurrent layers, 
i.e., duplicating the configuration of the <tt>GRULayer</tt>s, renaming the 
name of each layer with unrolling index, and re-configuring the 
<tt>srclayer</tt> field. After preprocessing, each layer&#x2019;s name is 
changed to <tt>&lt;unrolling_index&gt;#&lt;user_configured_name&gt;.</tt> 
Consequently, the (unrolled) neural net configuration passed to NeuralNet class 
includes all layers and their connections. The NeuralNet class creates and 
setup each layer in the same way as for other models. For example, after 
partitioning, each layer&#x2019;s name is changed to 
<tt>&lt;layer_name&gt;@&lt;partition_index&gt;</tt>. One difference is that it 
has some special code for sharing Param data and grad Blobs for layers unrolled 
from the same original layer.</p>
+<p>Users can visualize the neural net structure using the Python script 
<tt>tool/graph.py</tt> and the files in <i>WORKSPACE/visualization/</i>. For 
example, after the training program is started,</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">python tool/graph.py 
examples/char-rnn/visualization/train_net.json
+</pre></div></div>
+<p>The generated image file is shown in Fig.3 for <tt>unroll_len=5</tt>,</p>
+<p><img src="../images/char-rnn-net.jpg" style="width: 550px" alt="" /> 
+<p><b> Fig.3 - Net structure generated by SINGA</b></p></div>
+<div class="section">
+<h3><a name="BPTTWorker"></a>BPTTWorker</h3>
+<p>The BPTT (back-propagation through time) algorithm is typically used to 
compute gradients of the objective loss w.r.t. parameters for RNN models. It 
forwards propagates through all unrolled layers (i.e., timepoints) to compute 
features of each layer, and backwards propagates to compute gradients of 
parameters. It is the same as the BP algorithm for feed-forward models if the 
recurrent layers are unrolled infinite times. In practice, due to the 
constraint of memory, the truncated BPTT is widely used. It unrolls the 
recurrent layers a fixed (truncated) times (controlled by <tt>unroll_len</tt>). 
In SINGA, a BPTTWorker is provided to run the truncated BPTT algorithm for each 
mini-batch (i.e., iteration). The pseudo code is</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">BPTTWorker::Forward(phase, net) {
+  for each layer in net
+    if layer.unroll_index() == 0
+      Get(layer.params());   // fetch params values from servers
+    srclayers = layer.srclayer();
+    if phase &amp; kTest
+      srclayers.push_back(net-&gt;GetConextLayer(layer))
+    layer.ComputeFeature(phase, srclayers)
+}
+
+BPTTWorker::Backward(phase, net) {
+  for each layer in reverse(net.layers())
+    layer.ComputeGradient(layer.srclayers())
+    if layer.unroll_index() == 0
+      Update(layer.params());   // send params gradients to servers
+}
+</pre></div></div>
+<p>The testing phase is processed specially. Because the test phase may sample 
a long sequence of data (e.g., sampling a piece of Linux kernel code), which 
requires many unrolled layers (e.g., more than 1000 characters/layers). But we 
cannot unroll the recurrent layers too many times due to memory constraint. The 
special line add the 0-th unrolled layer as one of its own source layer. 
Consequently, it dynamically adds a recurrent connection to the recurrent layer 
(e.g., GRULayer). Then we can sample from the model for infinite times. Taking 
the char-rnn model as an example, the test job can be configured as</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">test_steps: 10000
+train_one_batch {
+  Alg: kBPTT
+}
+net {
+  // do not set the unroll_len
+  layer {
+    // do not set the unroll_len
+  }
+  &#x2026;
+}
+</pre></div></div>
+<p>The instructions for <a href="test.html">running test</a> is the same for 
feed-forward models.</p></div></div>
+                  </div>
+            </div>
+          </div>
+
+    <hr/>
+
+    <footer>
+            <div class="container-fluid">
+                      <div class="row-fluid">
+                                                                          
+<p>Copyright © 2015 The Apache Software Foundation. All rights reserved. 
Apache Singa, Apache, the Apache feather logo, and the Apache Singa project 
logos are trademarks of The Apache Software Foundation. All other marks 
mentioned may be trademarks or registered trademarks of their respective 
owners.</p>
+                          </div>
+
+        
+                </div>
+    </footer>
+        </body>
+</html>

Added: websites/staging/singa/trunk/content/v0.3.0/gpu.html
==============================================================================
--- websites/staging/singa/trunk/content/v0.3.0/gpu.html (added)
+++ websites/staging/singa/trunk/content/v0.3.0/gpu.html Wed Apr 20 05:12:03 
2016
@@ -0,0 +1,404 @@
+<!DOCTYPE html>
+<!--
+ | Generated by Apache Maven Doxia at 2016-04-20 
+ | Rendered using Apache Maven Fluido Skin 1.4
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+<html xmlns="http://www.w3.org/1999/xhtml"; xml:lang="en" lang="en">
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+</li>
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+          <div id="banner">
+        <div class="pull-left">
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+                </a>
+                      </div>
+        <div class="pull-right">              <div id="bannerRight">
+                                                                               
                 <img src="../images/singa-title.png"  alt="Apache SINGA"/>
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+                    <span class="divider">/</span>
+      </li>
+        <li class="active ">Training on GPU</li>
+        
+                
+                    
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+            </ul>
+                
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+
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title="apache-incubator" class="builtBy">
+        <img class="builtBy"  alt="Apache Incubator" 
src="http://incubator.apache.org/images/egg-logo.png";    />
+      </a>
+                      </div>
+          </div>
+        </div>
+        
+                        
+        <div id="bodyColumn"  class="span10" >
+                                  
+            <h1>Training on GPU</h1>
+<hr />
+<p>Considering GPU is much faster than CPU for linear algebra operations, it 
is essential to support the training of deep learning models (which involves a 
lot of linear algebra operations) on GPU cards. SINGA now supports training on 
a single node (i.e., process) with multiple GPU cards. Training in a GPU 
cluster with multiple nodes is under development.</p>
+<div class="section">
+<h2><a name="Instructions"></a>Instructions</h2>
+<div class="section">
+<h3><a name="Compilation"></a>Compilation</h3>
+<p>To enable the training on GPU, you need to compile SINGA with <a 
class="externalLink" 
href="http://www.nvidia.com/object/cuda_home_new.html";>CUDA</a> from Nvidia,</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">./configure --enable-cuda 
--with-cuda=&lt;path to cuda folder&gt;
+</pre></div></div>
+<p>In addition, if you want to use the <a class="externalLink" 
href="https://developer.nvidia.com/cudnn";>CUDNN library</a> for convolutional 
neural network provided by Nvidia, you need to enable CUDNN,</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">./configure --enable-cuda 
--with-cuda=&lt;path to cuda folder&gt; --enable-cudnn --with-cudnn=&lt;path to 
cudnn folder&gt;
+</pre></div></div>
+<p>SINGA now supports CUDNN V3 and V4.</p></div>
+<div class="section">
+<h3><a name="Configuration"></a>Configuration</h3>
+<p>The job configuration for GPU training is similar to that for training on 
CPU. There is one more field to configure, <tt>gpu</tt>, which indicate the 
device ID of the GPU you want to use. The simplest configuration is</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint"># job.conf
+...
+gpu: 0
+...
+</pre></div></div>
+<div class="section">
+<h4><a name="Single_node_with_multiple_GPUs"></a>Single node with multiple 
GPUs</h4>
+<p>This configuration will run the worker on GPU 0. If you want to launch 
multiple workers, each on a separate GPU, you can configure it as</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint"># job.conf
+...
+gpu: 0
+gpu: 2
+...
+cluster {
+  nworkers_per_group: 2
+  nworkers_per_process: 2
+}
+</pre></div></div>
+<p>Using the above configuration, SINGA would partition each mini-batch evenly 
onto two workers which run on GPU 0 and GPU 2 respectively. For more 
information on running multiple workers in a single node, please refer to <a 
href="frameworks.html">Training Framework</a>. Please be careful to configure 
the same number of workers and number of <tt>gpu</tt>s. Otherwise some workers 
would run on GPU and the rest would run on CPU. This kind of hybrid training is 
not well supported for now.</p>
+<p>For some layers, their implementation is transparent to GPU/CPU, like the 
InnerProductLayer GRULayer, ReLULayer, etc. Hence, you can use the same 
configuration for these layers to run on GPU or CPU. For other layers, 
especially the layers involved in ConvNet, SINGA uses different implementations 
for GPU and CPU. Particularly, the GPU version is implemented using CUDNN 
library. To train a ConvNet on GPU, you configure the layers as</p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">layer {
+  type: kCudnnConv
+  ...
+}
+layer {
+  type: kCudnnPool
+  ...
+}
+</pre></div></div>
+<p>The <a href="cnn.html">cifar10 example</a> and <a 
href="alexnet.html">Alexnet example</a> have complete configurations for 
ConvNet.</p></div>
+<div class="section">
+<h4><a name="GPU_cluster"></a>GPU cluster</h4>
+<p>For distributed training over a (GPU) cluster, you just need to configure 
SINGA with <tt>--enable-dist</tt>, which would then compile SINGA with 
zookeeper and ZeroMQ.</p></div></div></div>
+<div class="section">
+<h2><a name="Implementation_details"></a>Implementation details</h2>
+<p>SINGA implements the GPU training by assigning each worker a GPU device at 
the beginning of training (by the Driver class). Then the work can call GPU 
functions and run them on the assigned GPU. GPU is typically used for linear 
algebra computation in layer functions, because GPU is good at such 
computation. There is a <a href="">Context</a> singleton, which stores the 
handles and random generators for each device. The layer code should detect its 
running device and then call the CPU or GPU functions correspondingly.</p>
+<p>To make the layer implementation easier SINGA provides some linear algebra 
functions (in <i>math_blob.h</i>), which are transparent to the running device 
for users. Internally, they query the Context singleton to get the device 
information and call CPU or GPU to do the computation. Consequently, users can 
implement layers without awareness of the underlying running device.</p>
+<p>If the functionality cannot be implemented using SINGA provided functions 
in <i>math_blob.h</i>, the layer code needs to handle the CPU and GPU devices 
explicitly by querying the Context singleton. For layers that cannot run on 
GPU, e.g., input/output layers and connection layers which have little 
computation but much IO or network workload, there is no need to consider the 
GPU device. When these layers are configured in a neural net, they will run on 
CPU (since they don&#x2019;t call GPU functions).</p></div>
+                  </div>
+            </div>
+          </div>
+
+    <hr/>
+
+    <footer>
+            <div class="container-fluid">
+                      <div class="row-fluid">
+                                                                          
+<p>Copyright © 2015 The Apache Software Foundation. All rights reserved. 
Apache Singa, Apache, the Apache feather logo, and the Apache Singa project 
logos are trademarks of The Apache Software Foundation. All other marks 
mentioned may be trademarks or registered trademarks of their respective 
owners.</p>
+                          </div>
+
+        
+                </div>
+    </footer>
+        </body>
+</html>

Added: websites/staging/singa/trunk/content/v0.3.0/hdfs.html
==============================================================================
--- websites/staging/singa/trunk/content/v0.3.0/hdfs.html (added)
+++ websites/staging/singa/trunk/content/v0.3.0/hdfs.html Wed Apr 20 05:12:03 
2016
@@ -0,0 +1,514 @@
+<!DOCTYPE html>
+<!--
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+        <li class="active ">Using HDFS with SINGA</li>
+        
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+                    
+      
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+
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Team">
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+        Apache Software Foundation</a>
+            </li>
+                
+      <li>
+  
+                          <a 
href="http://www.comp.nus.edu.sg/~dbsystem/singa/"; class="externalLink" 
title="NUS Site">
+          <span class="none"></span>
+        NUS Site</a>
+            </li>
+            </ul>
+                
+                    
+                
+          <hr />
+
+           <div id="poweredBy">
+                            <div class="clear"></div>
+                            <div class="clear"></div>
+                            <div class="clear"></div>
+                            <div class="clear"></div>
+                                                                               
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title="apache-incubator" class="builtBy">
+        <img class="builtBy"  alt="Apache Incubator" 
src="http://incubator.apache.org/images/egg-logo.png";    />
+      </a>
+                      </div>
+          </div>
+        </div>
+        
+                        
+        <div id="bodyColumn"  class="span10" >
+                                  
+            <h1>Using HDFS with SINGA</h1>
+<p>This guide explains how to make use of HDFS as the data store for SINGA 
jobs. </p>
+
+<ol style="list-style-type: decimal">
+  
+<li><a href="#quickstart">Quick start using Docker</a></li>
+  
+<li><a href="#hdfs">Setup HDFS</a></li>
+  
+<li><a href="#examples">Examples</a></li>
+</ol>
+<p>&#x2013; <a name="quickstart"></a></p>
+<div class="section">
+<h2><a name="Quick_start_using_Docker"></a>Quick start using Docker</h2>
+<p>We provide a Docker container built on top of <tt>singa/mesos</tt> (see the 
<a class="externalLink" 
href="http://singa.incubator.apache.org/docs/docker.html";>guide on building 
SINGA on Docker</a>). </p>
+
+<div class="source">
+<div class="source"><pre class="prettyprint">git clone 
https://github.com/ug93tad/incubator-singa
+cd incubator-singa
+git checkout SINGA-97-docker
+cd tool/docker/hdfs
+sudo docker build -t singa/hdfs .
+</pre></div></div>
+<p>Once built, the container image <tt>singa/hdfs</tt> contains the 
installation of HDFS C++ library (<tt>libhdfs3</tt>) and the latest SINGA code. 
Many distributed nodes can be launched, and HDFS be set up, by following the <a 
class="externalLink" 
href="http://singa.incubator.apache.org/docs/mesos.html";>guide for running 
distributed SINGA on Mesos</a>. </p>
+<p>In the following, we assume the HDFS setup with <tt>node0</tt> being the 
namenode, and <tt>nodei (i&gt;0)</tt> being the datanodes. </p>
+<p><a name="hdfs"></a></p></div>
+<div class="section">
+<h2><a name="Setup_HDFS"></a>Setup HDFS</h2>
+<p>There are at least 2 C/C++ client libraries for interacting with HDFS. One 
is from Hadoop (<tt>libhdfs</tt>), which is a <a class="externalLink" 
href="https://wiki.apache.org/hadoop/LibHDFS";>JNI-based library</a>, meaning 
that communication will go through JVM. The other is <tt>libhdfs3</tt> which is 
a <a class="externalLink" href="https://github.com/PivotalRD/libhdfs3";>native 
C++ library developed by Pivotal</a>, in which the client communicate directly 
with HDFS via RPC. The current implementation uses the second one. </p>
+
+<ol style="list-style-type: decimal">
+  
+<li>
+<p>Install <tt>libhdfs3</tt>: follow the <a class="externalLink" 
href="https://github.com/PivotalRD/libhdfs3#installation";>official 
guide</a>.</p></li>
+  
+<li>
+<p><b>Additional setup</b>: recent versions of Hadoop (&gt;2.4.x) support 
short-circuit local reads which bypass network communications (TCP sockets) 
when retrieving data at the local nodes. <tt>libhdfs3</tt> will throws errors 
(but will still continue to work) when it finds that short-circuit read is not 
set. To deal with this complaints, and improve performance, add the following 
configuration to <tt>hdfs-site.xml</tt> <b>and to 
<tt>hdfs-client.xml</tt></b></p>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">  &lt;property&gt;
+&lt;name&gt;dfs.client.read.shortcircuit&lt;/name&gt;
+&lt;value&gt;true&lt;/value&gt;
+  &lt;/property&gt;
+  &lt;property&gt;
+&lt;name&gt;dfs.domain.socket.path&lt;/name&gt;
+&lt;value&gt;/var/lib/hadoop-hdfs/dn_socket&lt;/value&gt;
+  &lt;/property&gt;
+</pre></div></div>
+<p>Next, at each client, set <tt>LIBHDFS3_CONF</tt> variable to point to 
<tt>hdfs-client.xml</tt> file:</p>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">  export 
LIBHDFS3_CONF=$HADOOP_HOME/etc/hadoop/hdfs-client.xml
+</pre></div></div></li>
+</ol>
+<p><a name="examples"></a></p></div>
+<div class="section">
+<h2><a name="Examples"></a>Examples</h2>
+<p>We explain how to run CIFAR10 and MNIST examples. Before training, the data 
must be uploaded to HDFS. </p>
+<div class="section">
+<h3><a name="CIFAR10"></a>CIFAR10</h3>
+
+<ol style="list-style-type: decimal">
+  
+<li>
+<p>Upload the data to HDFS (done at any of the HDFS nodes)</p>
+  
+<ul>
+    
+<li>Change <tt>job.conf</tt> to use HDFS: in 
<tt>examples/cifar10/job.conf</tt>, set <tt>backend</tt> property to 
<tt>hdfsfile</tt></li>
+    
+<li>Create and upload data:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">cd examples/cifar10
+cp Makefile.example Makefile
+make create
+hadoop dfs -mkdir /examples/cifar10
+hadoop dfs -copyFromLocal cifar-10-batches-bin /examples/cifar10/
+</pre></div></div>
+<p>If successful, the files should be seen in HDFS via <tt>hadoop dfs -ls 
/examples/cifar10</tt></p></li>
+  
+<li>
+<p>Training:</p>
+  
+<ul>
+    
+<li>Make sure <tt>conf/singa.conf</tt> has correct path to Zookeeper 
service:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">zookeeper_host: 
&quot;node0:2181&quot;
+</pre></div></div>
+  
+<ul>
+    
+<li>Make sure <tt>job.conf</tt> has correct paths to the train and test 
datasets:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">// train layer
+path: &quot;hdfs://node0:9000/examples/cifar10/train_data.bin&quot;
+mean_file: &quot;hdfs://node0:9000/examples/cifar10/image_mean.bin&quot;
+// test layer
+path: &quot;hdfs://node0:9000/examples/cifar10/test_data.bin&quot;
+mean_file: &quot;hdfs://node0:9000/examples/cifar10/image_mean.bin&quot;
+</pre></div></div>
+  
+<ul>
+    
+<li>Start training: execute the following command at every node</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">./singa -conf 
examples/cifar10/job.conf -singa_conf singa.conf -singa_job 0
+</pre></div></div></li>
+</ol></div>
+<div class="section">
+<h3><a name="MNIST"></a>MNIST</h3>
+
+<ol style="list-style-type: decimal">
+  
+<li>
+<p>Upload the data to HDFS (done at any of the HDFS nodes)</p>
+  
+<ul>
+    
+<li>Change <tt>job.conf</tt> to use HDFS: in <tt>examples/mnist/job.conf</tt>, 
set <tt>backend</tt> property to <tt>hdfsfile</tt></li>
+    
+<li>Create and upload data:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">cd examples/mnist
+cp Makefile.example Makefile
+make create
+make compile
+./create_data.bin train-images-idx3-ubyte train-labels-idx1-ubyte 
hdfs://node0:9000/examples/mnist/train_data.bin
+./create_data.bin t10k-images-idx3-ubyte t10k-labels-idx1-ubyte 
hdfs://node0:9000/examples/mnist/test_data.bin
+</pre></div></div>
+<p>If successful, the files should be seen in HDFS via <tt>hadoop dfs -ls 
/examples/mnist</tt></p></li>
+  
+<li>
+<p>Training:</p>
+  
+<ul>
+    
+<li>Make sure <tt>conf/singa.conf</tt> has correct path to Zookeeper 
service:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">zookeeper_host: 
&quot;node0:2181&quot;
+</pre></div></div>
+  
+<ul>
+    
+<li>Make sure <tt>job.conf</tt> has correct paths to the train and test 
datasets:</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">// train layer
+path: &quot;hdfs://node0:9000/examples/mnist/train_data.bin&quot;
+// test layer
+path: &quot;hdfs://node0:9000/examples/mnist/test_data.bin&quot;
+</pre></div></div>
+  
+<ul>
+    
+<li>Start training: execute the following command at every node</li>
+  </ul>
+  
+<div class="source">
+<div class="source"><pre class="prettyprint">./singa -conf 
examples/mnist/job.conf -singa_conf singa.conf -singa_job 0
+</pre></div></div></li>
+</ol></div></div>
+                  </div>
+            </div>
+          </div>
+
+    <hr/>
+
+    <footer>
+            <div class="container-fluid">
+                      <div class="row-fluid">
+                                                                          
+<p>Copyright © 2015 The Apache Software Foundation. All rights reserved. 
Apache Singa, Apache, the Apache feather logo, and the Apache Singa project 
logos are trademarks of The Apache Software Foundation. All other marks 
mentioned may be trademarks or registered trademarks of their respective 
owners.</p>
+                          </div>
+
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+                </div>
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