taverna-ncbi-activity-ui/
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/repo Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/commit/d09f5af9 Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/tree/d09f5af9 Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/diff/d09f5af9 Branch: refs/heads/master Commit: d09f5af9aa4a3233f39b939b0185cac1026215ba Parents: c39009c Author: Stian Soiland-Reyes <st...@apache.org> Authored: Mon Feb 2 09:50:18 2015 +0000 Committer: Stian Soiland-Reyes <st...@apache.org> Committed: Mon Feb 2 09:55:09 2015 +0000 ---------------------------------------------------------------------- .gitignore | 24 --------- .travis.yml | 1 - README.md | 5 -- pom.xml | 49 ------------------- .../spring/ncbi-activity-ui-context-osgi.xml | 9 ---- .../spring/ncbi-activity-ui-context.xml | 6 --- src/main/resources/ncbi_services | 0 src/main/resources/wsdl.png | Bin 748 -> 0 bytes taverna-ncbi-activity-ui/pom.xml | 49 +++++++++++++++++++ .../spring/ncbi-activity-ui-context-osgi.xml | 9 ++++ .../spring/ncbi-activity-ui-context.xml | 6 +++ .../src/main/resources/ncbi_services | 0 .../src/main/resources/wsdl.png | Bin 0 -> 748 bytes 13 files changed, 64 insertions(+), 94 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/.gitignore ---------------------------------------------------------------------- diff --git a/.gitignore b/.gitignore deleted file mode 100644 index ebe0e5b..0000000 --- a/.gitignore +++ /dev/null @@ -1,24 +0,0 @@ -# ignore project files # -.classpath -.project -.settings/ -catalog-v001.xml - -# ignore target files # -target/ -bin/ -build/ -dist/ -apidoc/ -*.swp - -# ignore svn files if there -.svn - -# ignore log files # -*.log -/logs/* -*/logs/* - - - http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/.travis.yml ---------------------------------------------------------------------- diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index dff5f3a..0000000 --- a/.travis.yml +++ /dev/null @@ -1 +0,0 @@ -language: java http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/README.md ---------------------------------------------------------------------- diff --git a/README.md b/README.md deleted file mode 100644 index 8176a37..0000000 --- a/README.md +++ /dev/null @@ -1,5 +0,0 @@ -Taverna Workflow system NCBI Activity: User Interface part for use in the Taverna Workbench. - -Does not have a directly corresponding activity repository - -This code was previously hosted at http://taverna.googlecode.com/svn/taverna/ui/net.sf.taverna.t2.ui-activities/ \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/pom.xml ---------------------------------------------------------------------- diff --git a/pom.xml b/pom.xml deleted file mode 100644 index 0a8a983..0000000 --- a/pom.xml +++ /dev/null @@ -1,49 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> - <modelVersion>4.0.0</modelVersion> - <parent> - <groupId>net.sf.taverna</groupId> - <artifactId>taverna-parent</artifactId> - <version>3.0.1-SNAPSHOT</version> - </parent> - <groupId>net.sf.taverna.t2.ui-activities</groupId> - <artifactId>ncbi-activity-ui</artifactId> - <name>Taverna 2 NCBI web service Activity UI</name> - <dependencies> - <dependency> - <groupId>junit</groupId> - <artifactId>junit</artifactId> - <version>${junit.version}</version> - <scope>test</scope> - </dependency> - <dependency> - <groupId>net.sf.taverna.t2.activities</groupId> - <artifactId>wsdl-activity</artifactId> - <version>${t2.activities.version}</version> - </dependency> - - <!-- testing dependencies --> - </dependencies> - <repositories> - <repository> - <releases /> - <snapshots> - <enabled>false</enabled> - </snapshots> - <id>mygrid-repository</id> - <name>myGrid Repository</name> - <url>http://www.mygrid.org.uk/maven/repository</url> - </repository> - <repository> - <releases> - <enabled>false</enabled> - </releases> - <snapshots /> - <id>mygrid-snapshot-repository</id> - <name>myGrid Snapshot Repository</name> - <url>http://www.mygrid.org.uk/maven/snapshot-repository</url> - </repository> - </repositories> - -</project> - http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml ---------------------------------------------------------------------- diff --git a/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml b/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml deleted file mode 100644 index 1c13381..0000000 --- a/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<beans:beans xmlns="http://www.springframework.org/schema/osgi"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; - xmlns:beans="http://www.springframework.org/schema/beans"; - xsi:schemaLocation="http://www.springframework.org/schema/beans - http://www.springframework.org/schema/beans/spring-beans.xsd - http://www.springframework.org/schema/osgi - http://www.springframework.org/schema/osgi/spring-osgi.xsd";> - -</beans:beans> http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml ---------------------------------------------------------------------- diff --git a/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml b/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml deleted file mode 100644 index 861c878..0000000 --- a/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml +++ /dev/null @@ -1,6 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<beans xmlns="http://www.springframework.org/schema/beans"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; - xsi:schemaLocation="http://www.springframework.org/schema/beans - http://www.springframework.org/schema/beans/spring-beans.xsd";> - -</beans> http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/ncbi_services ---------------------------------------------------------------------- diff --git a/src/main/resources/ncbi_services b/src/main/resources/ncbi_services deleted file mode 100644 index e69de29..0000000 http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/wsdl.png ---------------------------------------------------------------------- diff --git a/src/main/resources/wsdl.png b/src/main/resources/wsdl.png deleted file mode 100644 index f9fdae8..0000000 Binary files a/src/main/resources/wsdl.png and /dev/null differ http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/pom.xml ---------------------------------------------------------------------- diff --git a/taverna-ncbi-activity-ui/pom.xml b/taverna-ncbi-activity-ui/pom.xml new file mode 100644 index 0000000..0a8a983 --- /dev/null +++ b/taverna-ncbi-activity-ui/pom.xml @@ -0,0 +1,49 @@ +<?xml version="1.0" encoding="UTF-8"?> +<project xmlns="http://maven.apache.org/POM/4.0.0"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd";> + <modelVersion>4.0.0</modelVersion> + <parent> + <groupId>net.sf.taverna</groupId> + <artifactId>taverna-parent</artifactId> + <version>3.0.1-SNAPSHOT</version> + </parent> + <groupId>net.sf.taverna.t2.ui-activities</groupId> + <artifactId>ncbi-activity-ui</artifactId> + <name>Taverna 2 NCBI web service Activity UI</name> + <dependencies> + <dependency> + <groupId>junit</groupId> + <artifactId>junit</artifactId> + <version>${junit.version}</version> + <scope>test</scope> + </dependency> + <dependency> + <groupId>net.sf.taverna.t2.activities</groupId> + <artifactId>wsdl-activity</artifactId> + <version>${t2.activities.version}</version> + </dependency> + + <!-- testing dependencies --> + </dependencies> + <repositories> + <repository> + <releases /> + <snapshots> + <enabled>false</enabled> + </snapshots> + <id>mygrid-repository</id> + <name>myGrid Repository</name> + <url>http://www.mygrid.org.uk/maven/repository</url> + </repository> + <repository> + <releases> + <enabled>false</enabled> + </releases> + <snapshots /> + <id>mygrid-snapshot-repository</id> + <name>myGrid Snapshot Repository</name> + <url>http://www.mygrid.org.uk/maven/snapshot-repository</url> + </repository> + </repositories> + +</project> + http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml ---------------------------------------------------------------------- diff --git a/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml new file mode 100644 index 0000000..1c13381 --- /dev/null +++ b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<beans:beans xmlns="http://www.springframework.org/schema/osgi"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xmlns:beans="http://www.springframework.org/schema/beans"; + xsi:schemaLocation="http://www.springframework.org/schema/beans + http://www.springframework.org/schema/beans/spring-beans.xsd + http://www.springframework.org/schema/osgi + http://www.springframework.org/schema/osgi/spring-osgi.xsd";> + +</beans:beans> http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml ---------------------------------------------------------------------- diff --git a/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml new file mode 100644 index 0000000..861c878 --- /dev/null +++ b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml @@ -0,0 +1,6 @@ +<?xml version="1.0" encoding="UTF-8"?> +<beans xmlns="http://www.springframework.org/schema/beans"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; + xsi:schemaLocation="http://www.springframework.org/schema/beans + http://www.springframework.org/schema/beans/spring-beans.xsd";> + +</beans> http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/ncbi_services ---------------------------------------------------------------------- diff --git a/taverna-ncbi-activity-ui/src/main/resources/ncbi_services b/taverna-ncbi-activity-ui/src/main/resources/ncbi_services new file mode 100644 index 0000000..e69de29 http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/wsdl.png ---------------------------------------------------------------------- diff --git a/taverna-ncbi-activity-ui/src/main/resources/wsdl.png b/taverna-ncbi-activity-ui/src/main/resources/wsdl.png new file mode 100644 index 0000000..f9fdae8 Binary files /dev/null and b/taverna-ncbi-activity-ui/src/main/resources/wsdl.png differ
