http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
 
b/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
deleted file mode 100644
index e6e0fbb..0000000
--- 
a/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
+++ /dev/null
@@ -1,359 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: XMLSplitterSerialisationHelper.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/08 10:28:08 $
- *               by   $Author: stain $
- * Created on 16-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.xmlsplitter;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-
-import net.sf.taverna.wsdl.parser.ArrayTypeDescriptor;
-import net.sf.taverna.wsdl.parser.AttributeTypeDescriptor;
-import net.sf.taverna.wsdl.parser.BaseTypeDescriptor;
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-
-import org.apache.log4j.Logger;
-import org.jdom.Content;
-import org.jdom.Element;
-import org.jdom.Namespace;
-
-/**
- * A helper class that supports the XMLOutputSplitter and XMLInputSplitter,
- * providing the ability for each to be serialised/deserialised to and from the
- * extensions XML for the ScuflModel XML when storing a workflow. This XML
- * describes the TypeDescriptor tree that the Splitter wraps.
- * 
- * @author Stuart Owen
- * @author Asger Askov-Bleking
- * 
- */
-
-public class XMLSplitterSerialisationHelper {
-
-       public final static Namespace XScuflNS = Namespace.getNamespace("s",
-                       "http://org.embl.ebi.escience/xscufl/0.1alpha";);
-
-       private static Logger logger = Logger
-                       .getLogger(XMLSplitterSerialisationHelper.class);
-
-       /**
-        * Generates the extensions XML that describes the TypeDescriptor to 
allow
-        * an XMLInputSplitter or XMLOutputSplitter to be reconstructed using
-        * consumeXML.
-        */
-       public static Element typeDescriptorToExtensionXML(TypeDescriptor 
descriptor) {
-               Element result = new Element("extensions", XScuflNS);
-               Element type = null;
-               if (descriptor instanceof ComplexTypeDescriptor) {
-                       type = constructElementForComplexType(
-                                       (ComplexTypeDescriptor) descriptor, new 
ArrayList<String>());
-               }
-               else if (descriptor instanceof ArrayTypeDescriptor) {
-                       type = constructElementForArrayType(
-                                       (ArrayTypeDescriptor) descriptor, new 
ArrayList<String>());
-               }
-               result.addContent(type);
-               return result;
-       }
-
-       /**
-        * Generates the TypeDescriptor structurefrom the extensions XML element
-        * provided. This assumes that the root of the structure is 
<complextype/>.
-        * This will be the same xml generated by provideXML.
-        */
-       public static TypeDescriptor extensionXMLToTypeDescriptor(Element 
element) {
-               Element child = (Element) element.getChildren().get(0);
-               return buildTypeDescriptorFromElement(child,
-                               new HashMap<String, TypeDescriptor>());
-       }
-
-       private static Element constructElementForArrayType(
-                       ArrayTypeDescriptor descriptor, List<String> 
existingsTypes) {
-               Element result = new Element("arraytype", XScuflNS);
-               if (existingsTypes.contains(descriptor.getQname().toString())) {
-                       result.setAttribute("id", 
descriptor.getQname().toString());
-                       populateElement(result, descriptor);
-                       result.removeAttribute("qname");
-               } else {
-                       existingsTypes.add(descriptor.getQname().toString());
-                       populateElement(result, descriptor);
-                       Element elementType = new Element("elementtype", 
XScuflNS);
-                       if (descriptor.getElementType() instanceof 
ComplexTypeDescriptor) {
-                               
elementType.addContent(constructElementForComplexType(
-                                               (ComplexTypeDescriptor) 
descriptor.getElementType(),
-                                               existingsTypes));
-                       } else if (descriptor.getElementType() instanceof 
ArrayTypeDescriptor) {
-                               
elementType.addContent(constructElementForArrayType(
-                                               (ArrayTypeDescriptor) 
descriptor.getElementType(),
-                                               existingsTypes));
-                       } else if (descriptor.getElementType() instanceof 
BaseTypeDescriptor) {
-                               Element element = new Element("basetype", 
XScuflNS);
-                               populateElement(element, 
descriptor.getElementType());
-                               elementType.addContent(element);
-                       }
-                       result.addContent(elementType);
-               }
-               return result;
-       }
-
-       private static Element constructElementForComplexType(
-                       ComplexTypeDescriptor descriptor, List<String> 
existingsTypes) {
-               Element result = new Element("complextype", XScuflNS);
-               if (existingsTypes.contains(descriptor.getQname().toString())) {
-                       result.setAttribute("id", 
descriptor.getQname().toString());
-                       populateElement(result, descriptor);
-                       result.removeAttribute("qname");
-               } else {
-                       existingsTypes.add(descriptor.getQname().toString());
-                       populateElement(result, descriptor);
-                       Element elements = new Element("elements", XScuflNS);
-                       for (TypeDescriptor desc : descriptor.getElements()) {
-                               Element element = null;
-                               if (desc instanceof ComplexTypeDescriptor) {
-                                       element = 
constructElementForComplexType(
-                                                       (ComplexTypeDescriptor) 
desc, existingsTypes);
-                               } else if (desc instanceof ArrayTypeDescriptor) 
{
-                                       element = constructElementForArrayType(
-                                                       (ArrayTypeDescriptor) 
desc, existingsTypes);
-                               } else if (desc instanceof BaseTypeDescriptor) {
-                                       element = new Element("basetype", 
XScuflNS);
-                                       populateElement(element, desc);
-                               }
-                               if (element != null)
-                                       elements.addContent(element);
-                       }
-                       result.addContent(elements);
-                       List<TypeDescriptor> attributeDescriptors = 
descriptor.getAttributes();
-                       if (attributeDescriptors != null && 
attributeDescriptors.size() > 0) {
-                               Element attributes = new Element("attributes", 
XScuflNS);
-                               for (TypeDescriptor desc : 
attributeDescriptors) {
-                                       Element attribute = new 
Element("attribute", XScuflNS);
-                                       populateElement(attribute, desc);
-                                       attributes.addContent(attribute);
-                               }
-                               result.addContent(attributes);
-                       }
-               }
-               return result;
-       }
-
-       private static void populateElement(Element element,
-                       TypeDescriptor descriptor) {
-               element.setAttribute("optional", String
-                               .valueOf(descriptor.isOptional()));
-               element.setAttribute("unbounded", String.valueOf(descriptor
-                               .isUnbounded()));
-               if (descriptor instanceof ArrayTypeDescriptor) {
-                       element.setAttribute("wrapped", String
-                                       .valueOf(((ArrayTypeDescriptor) 
descriptor).isWrapped()));
-               }
-               element.setAttribute("typename", descriptor.getType());
-               element.setAttribute("name", descriptor.getName() == null ? ""
-                               : descriptor.getName());
-               element.setAttribute("qname", descriptor.getQname().toString());
-               if (descriptor.getDocumentation() != null){
-           Element annotationElement =
-                   new Element("annotation", Namespace.getNamespace("xsd", 
"http://www.w3.org/2001/XMLSchema";));
-           Element documentationElemenet =
-                    new Element("documentation", Namespace.getNamespace("xsd", 
"http://www.w3.org/2001/XMLSchema";));
-            documentationElemenet.setText(descriptor.getDocumentation());
-            annotationElement.addContent(documentationElemenet);
-            element.addContent(annotationElement);
-               }
-
-       }
-
-       private static TypeDescriptor buildTypeDescriptorFromElement(
-                       Element element, HashMap<String, TypeDescriptor> 
existingsTypes) {
-               TypeDescriptor result = null;
-               if (element.getAttributeValue("id") != null) {
-                       TypeDescriptor stored = existingsTypes.get(element
-                                       .getAttributeValue("id"));
-                       if (stored == null)
-                               logger.fatal("Missing reference to parent type 
with id="
-                                               + 
element.getAttributeValue("id"));
-                       else {
-                               result = createFromCache(stored, element);
-                       }
-               }
-
-               if (result == null) {
-                       if (element.getName().equalsIgnoreCase("complextype")) {
-                               result = new ComplexTypeDescriptor();
-                               populateDescriptor(element, result);
-                               
existingsTypes.put(result.getQname().toString(), result);
-                               Element elements = element.getChild("elements", 
XScuflNS);
-                               for (Iterator<?> iterator = 
elements.getChildren().iterator(); iterator
-                                               .hasNext();) {
-                                       Element childElement = (Element) 
iterator.next();
-                                       ((ComplexTypeDescriptor) 
result).getElements().add(
-                                                       
buildTypeDescriptorFromElement(childElement,
-                                                                       
existingsTypes));
-                               }
-                               Element attributes = 
element.getChild("attributes", XScuflNS);
-                               if (attributes != null) {
-                                       for (Iterator<?> iterator = 
attributes.getChildren().iterator(); iterator
-                                       .hasNext();) {
-                                               Element childElement = 
(Element) iterator.next();
-                                               ((ComplexTypeDescriptor) 
result).getAttributes().add(
-                                                               
buildTypeDescriptorFromElement(childElement,
-                                                                               
existingsTypes));
-                                       }
-                               }
-
-                       } else if 
(element.getName().equalsIgnoreCase("arraytype")) {
-
-                               result = new ArrayTypeDescriptor();
-                               populateDescriptor(element, result);
-                               
existingsTypes.put(result.getQname().toString(), result);
-                               Element elementType = 
element.getChild("elementtype", XScuflNS);
-                               ((ArrayTypeDescriptor) result)
-                                               
.setElementType(buildTypeDescriptorFromElement(
-                                                               (Element) 
elementType.getChildren().get(0),
-                                                               
existingsTypes));
-                               if (element.getAttribute("wrapped") != null) {
-                                       ((ArrayTypeDescriptor) 
result).setWrapped(element
-                                                       
.getAttributeValue("wrapped").equalsIgnoreCase(
-                                                                       
"true"));
-                               } else {
-                                       // prior to the addition of the wrapped 
attribute, in the
-                                       // majority of cases an array
-                                       // would not be wrapped if it was 
flagged as unbounded.
-                                       ((ArrayTypeDescriptor) 
result).setWrapped(!result
-                                                       .isUnbounded());
-                               }
-
-                       } else if 
(element.getName().equalsIgnoreCase("basetype")) {
-                               result = new BaseTypeDescriptor();
-                               populateDescriptor(element, result);
-                       } else if 
(element.getName().equalsIgnoreCase("attribute")) {
-                               result = new AttributeTypeDescriptor();
-                               populateDescriptor(element, result);
-                       } else if 
(element.getName().equalsIgnoreCase("attribute")) {
-                               result = new AttributeTypeDescriptor();
-                               populateDescriptor(element, result);
-                       }
-               }
-
-               return result;
-       }
-
-       /**
-        * Performs a shallow copy of the descriptor stored, but updates its 
name,
-        * isbounded and optional This means that descriptors of the same type 
do
-        * not need to be repeated throught the stored XML but also takes into
-        * account parameters of the same type may have different name and
-        * attributes to that stored
-        * 
-        * @param descriptor
-        * @param element
-        * @return
-        */
-       private static TypeDescriptor createFromCache(TypeDescriptor descriptor,
-                       Element element) {
-               TypeDescriptor result = null;
-               if (descriptor instanceof ArrayTypeDescriptor) {
-                       ArrayTypeDescriptor array = new ArrayTypeDescriptor();
-                       array.setQname(descriptor.getQname());
-                       array.setElementType(((ArrayTypeDescriptor) descriptor)
-                                       .getElementType());
-                       array.setWrapped(((ArrayTypeDescriptor) 
descriptor).isWrapped());
-                       result = array;
-               } else if (descriptor instanceof ComplexTypeDescriptor) {
-                       ComplexTypeDescriptor complex = new 
ComplexTypeDescriptor();
-                       complex.setQname(descriptor.getQname());
-                       complex.setElements(((ComplexTypeDescriptor) descriptor)
-                                       .getElements());
-                       result = complex;
-               } else {
-                       throw new IllegalArgumentException("Unexpected type 
descriptor: "
-                                       + descriptor);
-               }
-               result.setType(descriptor.getType());
-
-               String name = element.getAttributeValue("name");
-               result.setName(name != null ? name : descriptor.getName());
-
-               String optional = element.getAttributeValue("optional");
-               if (optional != null) {
-                       result.setOptional(optional.equalsIgnoreCase("true"));
-               } else {
-                       result.setOptional(descriptor.isOptional());
-               }
-
-               String unbounded = element.getAttributeValue("unbounded");
-               if (unbounded != null) {
-                       result.setUnbounded(unbounded.equalsIgnoreCase("true"));
-               } else {
-                       result.setUnbounded(descriptor.isUnbounded());
-               }
-
-               return result;
-       }
-
-       private static void populateDescriptor(Element element,
-                       TypeDescriptor result) {
-               result.setName(element.getAttributeValue("name"));
-               result.setType(element.getAttributeValue("typename"));
-               result.setOptional(element.getAttributeValue("optional")
-                               .equalsIgnoreCase("true"));
-               result.setUnbounded(element.getAttributeValue("unbounded")
-                               .equalsIgnoreCase("true"));
-
-               Element annotationChild =
-               element.getChild("annotation", Namespace.getNamespace("xsd", 
"http://www.w3.org/2001/XMLSchema";));
-        if (annotationChild != null){
-           List documentationChildren = annotationChild
-                    .getChildren("documentation", 
Namespace.getNamespace("xsd", "http://www.w3.org/2001/XMLSchema";));
-                        
-           String documentation = "";
-            for (Object documentationChild : documentationChildren) {
-                documentation += ((Element)documentationChild).getText();
-            }
-            if (!documentation.isEmpty()){
-               result.setDocumentation(documentation);
-            }
-        }
-
-               // qname has been added since 1.3.2-RC1 so need to test if 
missing for
-               // older workflows
-               // if missing it is resolved to an empty namespace and typename:
-               // {}typename
-               String qname = element.getAttributeValue("qname");
-               if (qname != null)
-                       result.setQnameFromString(qname);
-       }
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
deleted file mode 100644
index c7be469..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
+++ /dev/null
@@ -1,240 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: TypeDescriptorTest.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2007/11/30 12:13:38 $
- *               by   $Author: sowen70 $
- * Created on 17-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import junit.framework.TestCase;
-
-public class TypeDescriptorTest extends TestCase {
-
-       // array of strings
-       public void testRetrieveSignitureForArrayDescriptor() {
-               ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-               desc.setName("AnArray");
-               desc.setType("arrayofstring");
-
-               BaseTypeDescriptor base = new BaseTypeDescriptor();
-               base.setName("");
-               base.setType("string");
-
-               desc.setElementType(base);
-
-               String[] names = new String[1];
-               Class<?>[] types = new Class[1];
-
-               List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-               params.add(desc);
-               TypeDescriptor.retrieveSignature(params, names, types);
-
-               assertEquals("AnArray", names[0]);
-               assertEquals(String[].class, types[0]);
-       }
-
-       // array of strings, but type for array is defined as string
-       // (which is logically warped, but some wsdl's describe their string 
arrays
-       // this way).
-       public void testRetrieveSignitureForArrayDescriptor3() {
-               ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-               desc.setName("AnArray");
-               desc.setType("string");
-
-               BaseTypeDescriptor base = new BaseTypeDescriptor();
-               base.setName("");
-               base.setType("string");
-
-               desc.setElementType(base);
-
-               String[] names = new String[1];
-               Class<?>[] types = new Class[1];
-
-               List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-               params.add(desc);
-               TypeDescriptor.retrieveSignature(params, names, types);
-
-               assertEquals("AnArray", names[0]);
-               assertEquals(String[].class, types[0]);
-       }
-
-       // array of complex types
-       public void testRetrieveSignitureForArrayDescriptor2() {
-               ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-               desc.setName("AnArray");
-               desc.setType("complextype");
-
-               ComplexTypeDescriptor complex = new ComplexTypeDescriptor();
-               complex.setName("complex");
-               complex.setType("complextype");
-
-               desc.setElementType(complex);
-
-               String[] names = new String[1];
-               Class<?>[] types = new Class[1];
-
-               List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-               params.add(desc);
-               TypeDescriptor.retrieveSignature(params, names, types);
-
-               assertEquals("AnArray", names[0]);
-               assertEquals(org.w3c.dom.Element.class, types[0]);
-       }
-
-       public void testForCyclicTrue() {
-               ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-               a.setName("a");
-               a.setType("outertype");
-
-               ComplexTypeDescriptor b = new ComplexTypeDescriptor();
-               b.setName("b");
-               b.setType("middletype");
-
-               ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-               c.setName("c");
-               c.setType("innertype");
-
-               a.getElements().add(b);
-               b.getElements().add(c);
-               c.getElements().add(a);
-
-               assertTrue("should be identified as cyclic", 
TypeDescriptor.isCyclic(a));
-       }
-
-       public void testForCyclicTrueWithArray() {
-               ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-               a.setName("a");
-               a.setType("outertype");
-
-               ArrayTypeDescriptor b = new ArrayTypeDescriptor();
-               b.setName("b");
-               b.setType("arraytype");
-
-               ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-               c.setName("c");
-               c.setType("innertype");
-
-               a.getElements().add(b);
-               b.setElementType(c);
-               c.getElements().add(a);
-
-               assertTrue("should be identified as cyclic", 
TypeDescriptor.isCyclic(a));
-       }
-
-       public void testForCyclicFalse() {
-               ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-               a.setName("a");
-               a.setType("person");
-
-               ComplexTypeDescriptor b = new ComplexTypeDescriptor();
-               b.setName("b");
-               b.setType("name");
-
-               ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-               c.setName("c");
-               c.setType("age");
-
-               a.getElements().add(b);
-               a.getElements().add(c);
-
-               assertFalse("should be not identified as cyclic", TypeDescriptor
-                               .isCyclic(a));
-       }
-
-       public void testQNameAsString() {
-               ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-               a.setQnameFromString("{URI}localPart");
-               assertEquals("URI", a.getQname().getNamespaceURI());
-               assertEquals("localPart", a.getQname().getLocalPart());
-
-               a = new ComplexTypeDescriptor();
-               a.setQnameFromString("{}localPart");
-               assertEquals("", a.getQname().getNamespaceURI());
-               assertEquals("localPart", a.getQname().getLocalPart());
-       }
-       
-       public void testBaseTypeKnownSigniture() {
-               TypeDescriptor decimal=new BaseTypeDescriptor();
-               decimal.setName("adecimal");
-               decimal.setType("decimal");
-               
-               List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-               String [] names=new String[1];
-               Class<?> [] types=new Class[1];
-               params.add(decimal);
-               TypeDescriptor.retrieveSignature(params, names, types);
-               
-               assertEquals("should only be 1 type",1,types.length);
-               assertEquals("should only be 1 name",1,names.length);
-               
-               assertEquals("name should be adecimal","adecimal",names[0]);
-               assertEquals("type should be double",Double.TYPE,types[0]);
-       }
-       
-       public void testBaseTypeUnrecognisedSigniture() {
-               TypeDescriptor date=new BaseTypeDescriptor();
-               date.setName("adate");
-               date.setType("date");
-               
-               List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-               String [] names=new String[1];
-               Class<?> [] types=new Class[1];
-               params.add(date);
-               TypeDescriptor.retrieveSignature(params, names, types);
-               
-               assertEquals("should only be 1 type",1,types.length);
-               assertEquals("should only be 1 name",1,names.length);
-               
-               assertEquals("name should be adecimal","adate",names[0]);
-               assertEquals("type should be string",String.class,types[0]);
-       }
-       
-       public void testComplex() {
-               TypeDescriptor complex=new ComplexTypeDescriptor();
-               complex.setName("acomplex");
-               complex.setType("complextype");
-               
-               List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-               String [] names=new String[1];
-               Class<?> [] types=new Class[1];
-               params.add(complex);
-               TypeDescriptor.retrieveSignature(params, names, types);
-               
-               assertEquals("should only be 1 type",1,types.length);
-               assertEquals("should only be 1 name",1,names.length);
-               
-               assertEquals("name should be adecimal","acomplex",names[0]);
-               assertEquals("type should be 
string",org.w3c.dom.Element.class,types[0]);
-       }
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
deleted file mode 100644
index f111619..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
+++ /dev/null
@@ -1,295 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-import java.util.List;
-
-import javax.wsdl.Operation;
-import javax.xml.namespace.QName;
-
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Test;
-
-public class WSDLParserTest {
-       
-       @Test
-       public void testGetOperations() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               List<Operation> operations = parser.getOperations();
-               assertEquals(
-                               "wrong number of operations found (wsdl may 
have changed)", 12,
-                               operations.size());
-               Operation op = operations.get(0);
-               assertEquals("wrong name for first operation", "run_eGquery", op
-                               .getName());
-               assertEquals("wrong style", "document", parser.getStyle());
-       }
-
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-
-       @Test
-       public void testGetActionURI() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               String actionURI = parser.getSOAPActionURI("run_eInfo");
-               assertEquals("action uri is wrong", "einfo", actionURI);
-       }
-
-       @Test
-       public void testComplexTypeFromImport() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-
-               List<TypeDescriptor> inputs = parser
-                               .getOperationInputParameters("run_eInfo");
-               List<TypeDescriptor> outputs = parser
-                               .getOperationOutputParameters("run_eInfo");
-               assertEquals("wrong number of inputs", 1, inputs.size());
-               assertEquals("wrong number of outputs", 1, outputs.size());
-               assertTrue("input should be complex",
-                               inputs.get(0) instanceof ComplexTypeDescriptor);
-               ComplexTypeDescriptor complexTypeDesc = (ComplexTypeDescriptor) 
inputs
-                               .get(0);
-               assertEquals("wrong name", "parameters", 
complexTypeDesc.getName());
-               assertEquals("wrong number of elements", 3, complexTypeDesc
-                               .getElements().size());
-
-               TypeDescriptor typeDesc = complexTypeDesc
-                               .getElements().get(0);
-
-               assertEquals("wrong name", "db", typeDesc.getName());
-               assertEquals("wrong type", "string", typeDesc.getType());
-               assertTrue("db should be optional", typeDesc.isOptional());
-               assertFalse("db should not be unbounded", 
typeDesc.isUnbounded());
-
-               typeDesc = complexTypeDesc.getElements().get(1);
-               assertEquals("wrong name", "tool", typeDesc.getName());
-               assertEquals("wrong type", "string", typeDesc.getType());
-               assertTrue("tool should be optional", typeDesc.isOptional());
-               assertFalse("tool should not be unbounded", 
typeDesc.isUnbounded());
-
-               typeDesc = complexTypeDesc.getElements().get(2);
-               assertEquals("wrong name", "email", typeDesc.getName());
-               assertEquals("wrong type", "string", typeDesc.getType());
-               assertTrue("email should be optional", typeDesc.isOptional());
-               assertFalse("email should not be unbounded", 
typeDesc.isUnbounded());
-       }
-
-       @Test
-       public void testNestedComplexTypes() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-               List<TypeDescriptor> inputs = parser
-                               
.getOperationInputParameters("BIVGetComplexRecord");
-               List<TypeDescriptor> outputs = parser
-                               
.getOperationOutputParameters("BIVGetComplexRecord");
-
-               assertEquals("wrong number of inputs", 1, inputs.size());
-               assertEquals("wrong number of outputs", 1, outputs.size());
-
-               assertEquals("wrong name for input", "bid", (inputs
-                               .get(0)).getName());
-               assertEquals("wrong type for input", "int", (inputs
-                               .get(0)).getType());
-
-               assertEquals("wrong name for output", "BIVComplex",
-                               (outputs.get(0)).getName());
-               assertEquals("wrong type for output", "BIVComplex",
-                               (outputs.get(0)).getType());
-               assertTrue("wrong descriptor class for output",
-                               outputs.get(0) instanceof 
ComplexTypeDescriptor);
-
-               ComplexTypeDescriptor typeDesc = (ComplexTypeDescriptor) 
outputs.get(0);
-               assertEquals("wrong number of inner elements", 3, typeDesc
-                               .getElements().size());
-               assertEquals("wrong name for first element", "bid",
-                               (typeDesc.getElements().get(0)).getName());
-               assertEquals("wrong name for 2nd element", "spokeModel",
-                               (typeDesc.getElements().get(1)).getName());
-               assertEquals("wrong name for 3rd element", "subunit",
-                               (typeDesc.getElements().get(2)).getName());
-
-               assertTrue("3rd element should be instance of 
ArrayTypeDescriptor",
-                               typeDesc.getElements().get(2) instanceof 
ArrayTypeDescriptor);
-               ArrayTypeDescriptor arrayTypeDesc = (ArrayTypeDescriptor) 
typeDesc
-                               .getElements().get(2);
-
-               assertEquals("wrong type for 3rd element", "BIVMolecule", 
arrayTypeDesc
-                               .getType());
-
-               typeDesc = (ComplexTypeDescriptor) 
arrayTypeDesc.getElementType();
-
-               assertEquals("wrong type for 3rd element", "BIVMolecule", 
typeDesc
-                               .getType());
-
-               assertEquals("wrong number of elements in nested complex type", 
7,
-                               typeDesc.getElements().size());
-               assertEquals("wrong name for first element", "id",
-                               (typeDesc.getElements().get(0)).getName());
-               assertEquals("wrong type for first element", "int",
-                               (typeDesc.getElements().get(0)).getType());
-
-               assertEquals("wrong name for last element", "smid-hits",
-                               (typeDesc.getElements().get(6)).getName());
-               assertEquals("wrong type for last element", "int",
-                               (typeDesc.getElements().get(6)).getType());
-       }
-       
-       @Test
-       public void testMissingStyleInBinding() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("SBWReader.wsdl"));
-               assertEquals("Style should default to document if missing", 
"document",
-                               parser.getStyle());
-       }
-
-       @Test
-       public void testBaseTypes() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-               List<TypeDescriptor> inputs = parser
-                               .getOperationInputParameters("BIVGetRecord");
-               assertEquals("wrong number of inputs", 1, inputs.size());
-               assertTrue("should not be base type",
-                               inputs.get(0) instanceof BaseTypeDescriptor);
-               assertEquals("wrong name", "bid", (inputs.get(0))
-                               .getName());
-               assertEquals("wrong type", "int", (inputs.get(0))
-                               .getType());
-       }
-
-       @Test
-       public void testArrayType() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-               List<TypeDescriptor> inputs = parser
-                               .getOperationInputParameters("BIVGetRecords");
-               List<TypeDescriptor> outputs = parser
-                               .getOperationOutputParameters("BIVGetRecords");
-               assertEquals("wrong number of inputs", 1, inputs.size());
-               assertTrue("input should be of AArrayTypeDescriptor",
-                               inputs.get(0) instanceof ArrayTypeDescriptor);
-
-               ArrayTypeDescriptor arrayTypeDesc = (ArrayTypeDescriptor) 
inputs.get(0);
-
-               assertEquals("wrong name", "ids", arrayTypeDesc.getName());
-               assertEquals("wrong type", "ArrayOf_xsd_int", 
arrayTypeDesc.getType());
-
-               TypeDescriptor typeDesc = arrayTypeDesc.getElementType();
-
-               assertTrue("element should be of type BaseTypeDescriptor",
-                               typeDesc instanceof BaseTypeDescriptor);
-               assertEquals("wrong type", "int", typeDesc.getType());
-
-               assertEquals("wrong number of outputs", 1, outputs.size());
-
-               assertTrue("output should be of ArrayTypeDescriptor",
-                               outputs.get(0) instanceof ArrayTypeDescriptor);
-
-               arrayTypeDesc = (ArrayTypeDescriptor) outputs.get(0);
-               assertEquals("wrong name", "BIVRecords", 
arrayTypeDesc.getName());
-               assertEquals("wrong type", "ArrayOfBIVRecord", 
arrayTypeDesc.getType());
-
-               typeDesc = arrayTypeDesc.getElementType();
-
-               assertEquals("wrong type", "BIVRecord", typeDesc.getType());
-       }
-
-       @Test
-       public void testGoVizNoOutputs() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("GoViz.wsdl"));
-
-               List<TypeDescriptor> inputs = parser
-                               .getOperationInputParameters("destroySession");
-               List<TypeDescriptor> outputs = parser
-                               .getOperationOutputParameters("destroySession");
-
-               assertEquals("wrong number of inputs", 1, inputs.size());
-               assertEquals("wrong number of outputs", 0, outputs.size());
-
-               TypeDescriptor typeDesc = inputs.get(0);
-               assertTrue("input should be BaseType",
-                               typeDesc instanceof BaseTypeDescriptor);
-               assertEquals("wrong name", "sessionID", typeDesc.getName());
-               assertEquals("wrong type", "string", typeDesc.getType());
-       }
-
-       @Test
-       public void testGetUseEncoded() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("bind.wsdl"));
-               String use = parser.getUse("BIVGetRecords");
-               assertEquals("use should be encoded", "encoded", use);
-       }
-
-       @Test
-       public void testGetUseLiteral() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               String use = parser.getUse("run_eInfo");
-               assertEquals("use should be literal", "literal", use);
-       }
-
-       @Test
-       public void testGetOperationNamespace() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("CurrencyExchangeService.wsdl"));
-               String operationNamespace = 
parser.getOperationNamespaceURI("getRate");
-               assertEquals("operation namespace is wrong",
-                               "urn:xmethods-CurrencyExchange", 
operationNamespace);
-       }
-       
-       @Test
-       public void testGetOperationNamespace2() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               String operationNamespace = parser
-                               .getOperationNamespaceURI("run_eInfo");
-               assertEquals("operation namespace is wrong",
-                               "http://www.ncbi.nlm.nih.gov/soap/eutils/einfo";,
-                               operationNamespace);
-       }
-
-       @Test
-       public void testGetOperationElementQName() throws Exception {
-               WSDLParser parser = new 
WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               QName operationQName = parser.getOperationQname("run_eInfo");
-               assertEquals("element name is wrong", "eInfoRequest", 
operationQName
-                               .getLocalPart());
-               assertEquals("operation namespace is wrong",
-                               
"http://www.ncbi.nlm.nih.gov/soap/eutils/einfo";, operationQName
-                                               .getNamespaceURI());
-       }
-
-       @Test
-       public void testGetOperationElementQName2() throws Exception {
-               URL tav744Url = getClass().getResource(
-                               
"/net/sf/taverna/wsdl/parser/TAV-744/InstrumentService__.wsdl");
-               WSDLParser parser = new WSDLParser(tav744Url.toExternalForm());
-               QName operationQName = parser.getOperationQname("getList");
-               assertEquals("operation element name is wrong", 
"GetListRequest",
-                               operationQName.getLocalPart());
-               assertEquals("operation namespace is wrong",
-                               
"http://InstrumentService.uniparthenope.it/InstrumentService";,
-                               operationQName.getNamespaceURI());
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
deleted file mode 100644
index 8c6cede..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
+++ /dev/null
@@ -1,57 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-
-import org.junit.Before;
-import org.junit.Test;
-
-/**
- * Check that WSDLParser can detect WSRF.
- * Tests {@link WSDLParser#checkWSRF()}
- * 
- * @author Stian Soiland-Reyes
- *
- */
-public class WSRFParserTest {
-       
-       private URL counterServiceWSDL;
-       private WSDLParser wsdlParser;
-
-       @Before
-       public void findWSDL() {
-               String path = "wsrf/counterService/CounterService_.wsdl";
-               counterServiceWSDL = getClass().getResource(path);      
-               assertNotNull("Coult not find test WSDL " + path, 
counterServiceWSDL);
-       }
-       
-       @Test
-       public void isWSRF() throws Exception {
-               wsdlParser = new 
WSDLParser(counterServiceWSDL.toExternalForm());
-               assertTrue("Not recognized as WSRF service", 
wsdlParser.isWsrfService());
-       }
-
-       
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
deleted file mode 100644
index 141305b..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
+++ /dev/null
@@ -1,108 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-
-
-public class EncodedBodyBuilderTest implements LocationConstants {
-       
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-
-       @Test
-       public void testSimpleCase() throws Exception {
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), "countString");
-               
-               assertTrue("Wrong type of builder created",builder instanceof 
EncodedBodyBuilder);
-               
-               inputMap.put("str", "Roger Ramjet");
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               String xml = body.getAsString();
-               
-               assertTrue("Contents of body are not as expected: actual 
body:"+xml,xml.contains("<str xsi:type=\"xsd:string\">Roger Ramjet</str>"));
-       }
-       
-       @Test
-       public void testStringArray() throws Exception {
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), 
"countStringArray");
-               
-               assertTrue("Wrong type of builder created",builder instanceof 
EncodedBodyBuilder);
-               List<String> array=new ArrayList<String>();
-               array.add("one");
-               array.add("two");
-               array.add("three");
-               inputMap.put("array", array);
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               String xml = body.getAsString();
-               
-               assertTrue("Contents of body are not as expected: actual 
body:"+xml,xml.contains("<string>one</string><string>two</string><string>three</string>"));
-       }
-       
-       @Test
-       public void testComplexType() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), 
"personToString");
-               
-               assertTrue("Wrong type of builder created",builder instanceof 
EncodedBodyBuilder);
-               
-               String p = "<Person 
xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"; 
xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\";><name 
xsi:type=\"xsd:string\">bob</name><age xsi:type=\"xsd:int\">12</age></Person>";
-               
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               
-               inputMap.put("p",p);
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               String xml = body.getAsString();
-               
-               System.out.println(xml);
-               
-               assertTrue("Type definition of Person is 
missing",xml.contains("<p xsi:type=\"ns1:Person\">"));
-               assertFalse("There shouldn't be ns2 
declaration",xml.contains("xmlns:ns2"));
-               assertTrue("Missing data content",xml.contains("<name 
xsi:type=\"xsd:string\">bob</name><age xsi:type=\"xsd:int\">12</age>"));
-               
-       }
-       
-       protected BodyBuilder createBuilder(String wsdl, String operation) 
throws Exception {
-               WSDLParser parser = new WSDLParser(wsdl);
-               
-               return BodyBuilderFactory.instance().create(parser, operation, 
parser.getOperationInputParameters(operation));
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
deleted file mode 100644
index 340f885..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
+++ /dev/null
@@ -1,170 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-import java.util.HashMap;
-import java.util.Map;
-
-import javax.xml.namespace.QName;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Ignore;
-import org.junit.Test;
-import org.w3c.dom.Node;
-
-public class LiteralBodyBuilderTest implements LocationConstants{
-       
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-
-       @Test
-       public void testUnqualifiedNamespaces() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("whatizit.wsdl"), "queryPmid");
-               
-               assertTrue("Is is the wrong type, it should be 
LiteralBodyBuilder",builder instanceof LiteralBodyBuilder);
-               
-               String parameters = "<parameters 
xmlns=\"http://www.ebi.ac.uk/webservices/whatizit/ws\";><pipelineName 
xmlns=\"\">swissProt</pipelineName><pmid xmlns=\"\">1234</pmid></parameters>";
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("parameters", parameters);
-               
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               String xml = body.getAsString();
-               
-               assertTrue("Content of body is incorrect in the definition of 
the pipelineName and pmid:"+xml,xml.contains("<pipelineName 
xmlns=\"\">swissProt</pipelineName><pmid xmlns=\"\">1234</pmid>"));
-               assertTrue("Wrapping element should have its namespace 
declared",xml.contains("<ns1:queryPmid"));
-       }
-       
-       @Test
-       public void testQualifiedUnwrapped() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), "countString");
-               
-               assertTrue("Is is the wrong type, it should be 
LiteralBodyBuilder",builder instanceof LiteralBodyBuilder);
-               Map<String,Object>inputMap = new HashMap<String, Object>();
-               inputMap.put("str", "bob");
-               
-               String xml = builder.build(inputMap).getAsString();
-               
-               assertEquals("XML should containe qualifed namespace for 
str",xml,"<ns1:str xmlns:ns1=\"http://testing.org\";>bob</ns1:str>");
-       }
-       
-       @Test
-       public void testUnwrappedSimple() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), "countString");
-               
-               assertTrue("Wrong type of builder, it should be Literal 
based",builder instanceof LiteralBodyBuilder);
-               
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("str", "12345");
-               
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               assertEquals("Input element should be named 
str:","str",body.getNodeName());
-               assertEquals("Value should be 
12345:","12345",body.getFirstChild().getNextSibling().getNodeValue());
-       }
-       
-       @Test
-       public void testUnwrappedArray() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), 
"countStringArray");
-               
-               assertTrue("Wrong type of builder, it should be Literal 
based",builder instanceof LiteralBodyBuilder);
-               
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("array", 
"<array><item>1</item><item>2</item><item>3</item></array>");
-               
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               String xml = body.getAsString();
-               assertEquals("Outer element should be named array. xml = 
"+xml,"array",body.getNodeName());
-               
-               Node itemElement = body.getFirstChild().getNextSibling();
-               assertEquals("Array element should be named item. xml = 
"+xml,"item",itemElement.getNodeName());
-               assertEquals("First Array element should have the value '1'. 
xml = "+xml,"1",itemElement.getFirstChild().getNodeValue());
-       }
-       
-       @Test 
-       public void testOperationElementNameEUtils() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("eutils/eutils_lite.wsdl"), "run_eInfo");
-
-               assertTrue("Wrong type of builder, it should be Literal 
based",builder instanceof LiteralBodyBuilder);
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("parameters",
-               // Note: Don't use xmlns="" as it would also affect <parameters>
-                               // - which should not affect the namespace of 
the soap body
-                               // element. The element qname of the 
SOAPBodyElement should be
-                               // determined by the schema only
-                               "<parameters 
xmlns:e='http://www.ncbi.nlm.nih.gov/soap/eutils/einfo'>"
-                                               + "<e:db>database</e:db>" + 
"<e:tool>myTool</e:tool>"
-                                               + 
"<e:email>nob...@nowhere.net</e:email>"
-                                               + "</parameters>");
-               SOAPBodyElement body = builder.build(inputMap);
-               assertEquals("QName of SOAP body's element did not match 
expected qname ", 
-                               new 
QName("http://www.ncbi.nlm.nih.gov/soap/eutils/einfo";, "eInfoRequest"), 
-                               body.getQName());
-       }
-       
-       @Test 
-       public void testOperationElementNameTAV744() throws Exception {
-               URL tav744Url = getClass().getResource(
-                               
"/net/sf/taverna/wsdl/parser/TAV-744/InstrumentService__.wsdl");
-               
-               BodyBuilder builder = createBuilder(tav744Url.toExternalForm(), 
"getList");
-
-               assertTrue("Wrong type of builder, it should be Literal 
based",builder instanceof LiteralBodyBuilder);
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               // No inputs
-               SOAPBodyElement body = builder.build(inputMap);
-               assertEquals("QName of SOAP body's element did not match 
expected qname ", 
-                               new 
QName("http://InstrumentService.uniparthenope.it/InstrumentService";, 
"GetListRequest"), 
-                               body.getQName());
-       }
-       
-       @Test
-       public void testRPCLiteral() throws Exception {
-               BodyBuilder builder = 
createBuilder(wsdlResourcePath("MyService-rpc-literal.wsdl"), "countString");
-               
-               assertTrue("Wrong type of builder, it should be Literal 
based",builder instanceof LiteralBodyBuilder);
-               
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("str", "abcdef");
-               
-               SOAPBodyElement body = builder.build(inputMap);
-               
-               assertEquals("Outer element should be named 
countString","countString",body.getNodeName());
-               Node strNode = body.getFirstChild();
-               assertEquals("Inner element should be called 
'str'","str",strNode.getNodeName());
-               assertEquals("str content should be 
abcdef","abcdef",strNode.getFirstChild().getNextSibling().getNodeValue());
-       }
-       
-       protected BodyBuilder createBuilder(String wsdl, String operation) 
throws Exception {
-               WSDLParser parser = new WSDLParser(wsdl);
-               return BodyBuilderFactory.instance().create(parser, operation, 
parser.getOperationInputParameters(operation));
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
deleted file mode 100644
index ab5e7a2..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
+++ /dev/null
@@ -1,97 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseEncodedTest.java,v $
- * Revision           $Revision: 1.4 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/29 16:15:54 $
- *               by   $Author: sowen70 $
- * Created on 08-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseEncodedTest  implements LocationConstants {
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-       
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testSimpleRPC() throws Exception {
-               
-               WSDLParser wsdlParser = new 
WSDLParser(wsdlResourcePath("ma.wsdl"));
-
-               String xml1 = "<ns1:whatGeneInStageResponse 
soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:ns1=\"urn:hgu.webservice.services\" 
xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\";><whatGeneInStageReturn
 soapenc:arrayType=\"ns2:GeneExpressedQueryShortDetails[0]\" 
xsi:type=\"soapenc:Array\" 
xmlns:ns2=\"http://SubmissionQuery.WSDLGenerated.hgu\"; 
xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\";><agene 
xsi:type=\"string\">a 
gene</agene></whatGeneInStageReturn></ns1:whatGeneInStageResponse>";
-
-               List<SOAPBodyElement> response = new 
ArrayList<SOAPBodyElement>();
-
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml1.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               SOAPResponseEncodedParser parser = new 
SOAPResponseEncodedParser(wsdlParser.getOperationOutputParameters("whatGeneInStage"));
-               parser.setStripAttributes(true);
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object result = outputMap.get("whatGeneInStageReturn");
-
-               assertNotNull(
-                               "output map should have contained entry for 
'whatGeneInStageReturn'",
-                               result);
-
-               assertEquals("output data should be a string", String.class, 
result.getClass());
-
-               assertEquals(
-                               "incorrect xml content in output",
-                               "<whatGeneInStageReturn><agene>a 
gene</agene></whatGeneInStageReturn>",
-                               result.toString());
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
deleted file mode 100644
index f756371..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
+++ /dev/null
@@ -1,174 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseLiteralTest.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2007/11/30 12:13:37 $
- *               by   $Author: sowen70 $
- * Created on 11-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.BaseTypeDescriptor;
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseLiteralTest{
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testLiteralParserResultInTextBlock() throws Exception {
-               List response = new ArrayList();
-               String xml = "<testResponse><out>&lt;data 
name=&quot;a&quot;&gt;some data&lt;/data&gt;&lt;data name=&quot;b&quot;&gt;some 
more data&lt;/data&gt;</out></testResponse>";
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml.getBytes()));
-
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               TypeDescriptor descriptor = new ComplexTypeDescriptor();
-               descriptor.setName("testResponse");
-
-               SOAPResponseLiteralParser parser = new 
SOAPResponseLiteralParser(
-                               Collections.singletonList(descriptor));
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object testResponse = outputMap.get("testResponse");
-
-               assertNotNull("there should be an output named 'testReponse'",
-                               testResponse);
-               assertEquals("output data should be a string", String.class,
-                               testResponse.getClass());
-
-               assertEquals(
-                               "xml is wrong",
-                               "<testResponse><out>&lt;data 
name=&quot;a&quot;&gt;some data&lt;/data&gt;&lt;data name=&quot;b&quot;&gt;some 
more data&lt;/data&gt;</out></testResponse>",
-                               testResponse.toString());
-       }
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testLiteralParser() throws Exception {
-               List response = new ArrayList();
-               String xml = "<testResponse><out><data name=\"a\">some 
data</data><data name=\"b\">some more data</data></out></testResponse>";
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml.getBytes()));
-
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               TypeDescriptor descriptor = new ComplexTypeDescriptor();
-               descriptor.setName("testResponse");
-
-               SOAPResponseLiteralParser parser = new 
SOAPResponseLiteralParser(
-                               Collections.singletonList(descriptor));
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object testResponse = outputMap.get("testResponse");
-
-               assertNotNull("there should be an output named 'testReponse'",
-                               testResponse);
-               assertEquals("output data should be a string", String.class,
-                               testResponse.getClass());
-
-               assertEquals(
-                               "xml is wrong",
-                               "<testResponse><out><data name=\"a\">some 
data</data><data name=\"b\">some more data</data></out></testResponse>",
-                               testResponse.toString());
-       }
-       
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testUnwrappedLiteralResponseParsing() throws Exception {
-               List response = new ArrayList();
-               
-               String xml = "<getStringReturn xmlns=\"http://testing.org\";>a 
string</getStringReturn>";
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml.getBytes()));
-
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               TypeDescriptor descriptor = new BaseTypeDescriptor();
-               descriptor.setName("getStringReturn");
-               
-               SOAPResponseLiteralParser parser = new 
SOAPResponsePrimitiveLiteralParser(
-                               Collections.singletonList(descriptor));
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object stringReturn = outputMap.get("getStringReturn");
-               
-               assertEquals("value of data returned is wrong","a 
string",stringReturn.toString());
-       }
-       
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testEmptyResponse() throws Exception {
-               List response = new ArrayList();
-               
-               TypeDescriptor descriptor = new BaseTypeDescriptor();
-               descriptor.setName("getStringReturn");
-               
-               SOAPResponseLiteralParser parser = new 
SOAPResponseLiteralParser(
-                               Collections.singletonList(descriptor));
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-               assertEquals("map should contain 1 element", 0, 
outputMap.size());
-       }
-
-}
-

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
deleted file mode 100644
index 87390c3..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
+++ /dev/null
@@ -1,246 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseMultiRefTest.java,v $
- * Revision           $Revision: 1.4 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/29 16:15:54 $
- *               by   $Author: sowen70 $
- * Created on 08-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.fail;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseMultiRefTest  implements LocationConstants {
-       
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testMultiRef() throws Exception {
-               WSDLParser wsdlParser = new 
WSDLParser(wsdlResourcePath("TestServices-rpcencoded.wsdl"));
-
-               List response = new ArrayList();
-
-               String xml1 = "<ns1:getPersonResponse 
soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:ns1=\"urn:testing\" 
xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\";><getPersonReturn 
href=\"#id0\"/></ns1:getPersonResponse>";
-               String xml2 = "<multiRef id=\"id0\" soapenc:root=\"0\" 
soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\"; 
xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\";><age 
xsi:type=\"soapenc:string\">5</age><name 
xsi:type=\"soapenc:string\">bob</name></multiRef>";
-
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml1.getBytes()));
-
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               SOAPResponseEncodedMultiRefParser parser = new 
SOAPResponseEncodedMultiRefParser(
-                               
wsdlParser.getOperationOutputParameters("getPerson"));
-               parser.setStripAttributes(true);
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object getPersonReturn =  outputMap
-                               .get("getPersonReturn");
-
-               assertNotNull(
-                               "output map should have contained entry for 
'getPersonReturn'",
-                               getPersonReturn);
-
-               assertEquals("output data should be a string", String.class,
-                               getPersonReturn.getClass());
-
-               assertEquals(
-                               "unexpected xml content in output",
-                               
"<getPersonReturn><age>5</age><name>bob</name></getPersonReturn>",
-                               getPersonReturn.toString());
-
-       }
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testMultiRefReturnNamespaced() throws Exception {
-               WSDLParser wsdlParser = new 
WSDLParser(wsdlResourcePath("TestServices-rpcencoded.wsdl"));
-
-               List response = new ArrayList();
-
-               String xml1 = "<ns1:getPersonResponse 
soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:ns1=\"urn:testing\" 
xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\";><ns1:getPersonReturn
 xmlns:ns1=\"urn:testing\" href=\"#id0\"/></ns1:getPersonResponse>";
-               String xml2 = "<multiRef id=\"id0\" soapenc:root=\"0\" 
soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\"; 
xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\"; 
xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\";><age 
xsi:type=\"soapenc:string\">5</age><name 
xsi:type=\"soapenc:string\">bob</name></multiRef>";
-
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml1.getBytes()));
-
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               SOAPResponseEncodedMultiRefParser parser = new 
SOAPResponseEncodedMultiRefParser(
-                               
wsdlParser.getOperationOutputParameters("getPerson"));
-               parser.setStripAttributes(true);
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object getPersonReturn = outputMap
-                               .get("getPersonReturn");
-
-               assertNotNull(
-                               "output map should have contained entry for 
'getPersonReturn'",
-                               getPersonReturn);
-
-               assertEquals("output data should be a string", String.class,
-                               getPersonReturn.getClass());
-
-               assertEquals(
-                               "unexpected xml content in output",
-                               
"<getPersonReturn><age>5</age><name>bob</name></getPersonReturn>",
-                               getPersonReturn.toString());
-       }
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testNestedReferences() throws Exception {
-       
-               //only the name is important.
-               TypeDescriptor descriptor = new ComplexTypeDescriptor();
-               descriptor.setName("result");
-               SOAPResponseEncodedMultiRefParser parser = new 
SOAPResponseEncodedMultiRefParser(
-                               Collections.singletonList(descriptor));
-       
-
-               String xml1 = "<response><result><creatures 
href=\"#id0\"/></result></response>";
-               String xml2 = "<multiref id=\"id0\"><item href=\"#id1\"/><item 
href=\"#id2\"/></multiref>";
-               String xml3 = "<multiref 
id=\"id1\"><creature>monkey</creature></multiref>";
-               String xml4 = "<multiref 
id=\"id2\"><creature>frog</creature></multiref>";
-
-               List response = new ArrayList();
-
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml1.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml3.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml4.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               
-               parser.setStripAttributes(true);
-
-               Map outputMap = parser.parse(response);
-
-               assertNotNull("no output map returned", outputMap);
-
-               assertEquals("map should contain 1 element", 1, 
outputMap.size());
-
-               Object result = outputMap.get("result");
-
-               assertNotNull("output map should have contained entry for 
'result'",
-                               result);
-
-               assertEquals("output data should be a string", String.class, 
result
-                               .getClass());
-
-               assertEquals(
-                               "incorrect xml content in output",
-                               
"<result><creatures><item><creature>monkey</creature></item><item><creature>frog</creature></item></creatures></result>",
-                               result.toString());
-
-       }
-
-       @SuppressWarnings("unchecked")
-       @Test
-       public void testFailOnCyclic() throws Exception {
-               List outputNames = new ArrayList();
-               outputNames.add("attachmentList");
-               outputNames.add("result");
-
-               String xml1 = "<response><result><item 
href=\"#id0\"/></result></response>";
-               String xml2 = "<multiref id=\"id0\"><item 
href=\"#id1\"/></multiref>";
-               String xml3 = "<multiref id=\"id1\"><item 
href=\"#id0\"/></multiref>";
-
-               List response = new ArrayList();
-
-               DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-                               .newDocumentBuilder();
-               Document doc = builder.parse(new 
ByteArrayInputStream(xml1.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               doc = builder.parse(new ByteArrayInputStream(xml3.getBytes()));
-               response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-               SOAPResponseEncodedMultiRefParser parser = new 
SOAPResponseEncodedMultiRefParser(
-                               outputNames);
-               parser.setStripAttributes(true);
-
-               try {
-                       parser.parse(response);
-                       fail("CyclicReferenceException should have been 
thrown");
-               } catch (CyclicReferenceException e) {
-
-               }
-       }
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
deleted file mode 100644
index 2faf887..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
+++ /dev/null
@@ -1,64 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertTrue;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Test;
-
-public class SOAPResponseParserFactoryTest  implements LocationConstants {
-       
-       private String wsdlResourcePath(String wsdlName) throws Exception {
-               return WSDLTestHelper.wsdlResourcePath(wsdlName);
-       }
-
-       //tests that the factory always returns a SOAPResponseLiteralParser 
regardless of the 
-       //output mime type, if the use is set to 'literal' (unwrapped/literal)
-       @Test
-       public void testLiteralUnwrappedParserForNonXMLOutput() throws 
Exception {
-               SOAPResponseParserFactory factory = 
SOAPResponseParserFactory.instance();
-               List<String> response = new ArrayList<String>();
-               WSDLParser wsdlParser = new 
WSDLParser(wsdlResourcePath("TestServices-unwrapped.wsdl"));
-               
-               SOAPResponseParser parser = factory.create(response, "literal", 
"document", wsdlParser.getOperationOutputParameters("getString"));
-               
-               assertTrue("The parser is the wrong type, it 
was:"+parser.getClass().getSimpleName(),parser instanceof 
SOAPResponsePrimitiveLiteralParser);
-       }
-       
-       //an additional test using another unwrapped/literal wsdl that returns 
a primative type
-       @Test
-       public void testLiteralUnwrappedAlternativeWSDL() throws Exception {
-               SOAPResponseParserFactory factory = 
SOAPResponseParserFactory.instance();
-               List<String> response = new ArrayList<String>();
-               WSDLParser wsdlParser = new 
WSDLParser(wsdlResourcePath("prodoric.wsdl"));
-               
-               SOAPResponseParser parser = factory.create(response, "literal", 
"document", wsdlParser.getOperationOutputParameters("hello"));
-               
-               assertTrue("The parser is the wrong type, it 
was:"+parser.getClass().getSimpleName(),parser instanceof 
SOAPResponsePrimitiveLiteralParser);
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
deleted file mode 100644
index 437820f..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
+++ /dev/null
@@ -1,32 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.testutils;
-
-/**
- * A definition of constants for base locations of external resources used for 
testing.
- * 
- * @author Stuart Owen
- *
- */
-public interface LocationConstants {
-       
-       public static final String WSDL_RESOURCE_BASE="/testwsdls/";
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
deleted file mode 100644
index 66c91ff..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
+++ /dev/null
@@ -1,51 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.testutils;
-
-import java.io.BufferedReader;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import net.sf.taverna.wsdl.parser.WSDLParserTest;
-
-public class WSDLTestHelper implements LocationConstants {
-       
-       public static String wsdlResourcePath(String resourceName) throws 
Exception {
-               return 
WSDLParserTest.class.getResource(WSDL_RESOURCE_BASE+resourceName).toExternalForm();
-       }
-
-    public String getResourceContentsString(String resourceName) throws 
Exception {
-               InputStream stream = 
WSDLTestHelper.class.getResourceAsStream("/"+resourceName);
-               BufferedReader reader = new BufferedReader(new 
InputStreamReader(stream));
-               String content="";
-               String line="";
-               while( (line = reader.readLine()) != null) {
-                       content+=line;
-               }
-
-               reader.close();
-
-               return content;
-
-       }
-
-    
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
----------------------------------------------------------------------
diff --git 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
 
b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
deleted file mode 100644
index 9be24c4..0000000
--- 
a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
+++ /dev/null
@@ -1,95 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- 
******************************************************************************/
-package net.sf.taverna.wsdl.xmlsplitter;
-
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.assertTrue;
-
-import java.util.HashMap;
-import java.util.Map;
-
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Ignore;
-import org.junit.Test;
-
-public class XMLInputSplitterTest implements LocationConstants {
-
-       @Test
-       public void testExecute() throws Exception {
-               WSDLParser parser = new 
WSDLParser(WSDLTestHelper.wsdlResourcePath("eutils/eutils_lite.wsdl"));
-               TypeDescriptor descriptor = 
parser.getOperationInputParameters("run_eInfo").get(0);
-               XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new 
String[]{"db","tool","email"},new 
String[]{"text/plain","text/plain","text/plain"},new String[]{"output"});
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               inputMap.put("db", "pubmed");
-               inputMap.put("email", "bob.monkho...@itv.com");
-               Map<String,String> outputMap = splitter.execute(inputMap);
-               assertNotNull("there should be an output named 
'output'",outputMap.containsKey("output"));
-               String xml = outputMap.get("output");
-               assertTrue(xml.startsWith("<parameters 
xmlns=\"http://www.ncbi.nlm.nih.gov/soap/eutils/einfo\";>"));
-               assertTrue(xml.contains("<db>pubmed</db>"));
-               assertTrue(! xml.contains("<tool"));
-               
assertTrue(xml.contains("<email>bob.monkho...@itv.com</email>"));
-       } 
-       
-       
-       @Test
-       public void testOptional() throws Exception {
-               WSDLParser parser = new 
WSDLParser(WSDLTestHelper.wsdlResourcePath("VSOi.wsdl"));
-               TypeDescriptor descriptor = 
parser.getOperationInputParameters("Query").get(0);
-               XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new 
String[]{"version","block"},new String[]{"text/plain","text/plain"},new 
String[]{"output"});
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               // connect none of the inputs
-               Map<String,String> outputMap = splitter.execute(inputMap);
-               assertNotNull("there should be an output named 
'output'",outputMap.containsKey("output"));
-               String xml = outputMap.get("output");
-               // empty string as <block> as it is not nillable
-               assertTrue(xml.contains("<block xmlns=\"\"></block>"));
-               // minOccurs=0 - so it should not be there
-               assertTrue(! xml.contains("<version>"));
-       } 
-       
-       
-       @Test
-       public void testNillable() throws Exception {
-               WSDLParser parser = new 
WSDLParser(WSDLTestHelper.wsdlResourcePath("VSOi.wsdl"));
-               TypeDescriptor descriptor = 
parser.getOperationInputParameters("Query").get(0);
-               XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new 
String[]{"version","block"},new String[]{"text/plain","text/plain"},new 
String[]{"output"});
-               Map<String,Object> inputMap = new HashMap<String, Object>();
-               // Magic string meaning insert xsi:nil=true
-               inputMap.put("version", "xsi:nil");
-               Map<String,String> outputMap = splitter.execute(inputMap);
-               assertNotNull("there should be an output named 
'output'",outputMap.containsKey("output"));
-               String xml = outputMap.get("output");
-               System.out.println(xml);
-               // empty string as <block> as it is not nillable
-               assertTrue(xml.contains("<block xmlns=\"\"></block>"));
-               // FIXME: Should not really allow nil=true here, as version is 
not nillable! 
-               assertTrue(xml.contains("<version xmlns=\"\" " +
-                               
"xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"; " +
-                               "xsi:nil=\"true\" />"));
-       } 
-       
-       
-}

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