http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/admin/Admin.java
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diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/admin/Admin.java 
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@@ -1,1100 +0,0 @@
-/*
- * Copyright (C) 2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.admin;
-
-import static org.taverna.server.master.admin.Paths.ALLOW_NEW;
-import static org.taverna.server.master.admin.Paths.ARGS;
-import static org.taverna.server.master.admin.Paths.EXEC_WF;
-import static org.taverna.server.master.admin.Paths.EXITCODE;
-import static org.taverna.server.master.admin.Paths.FACTORIES;
-import static org.taverna.server.master.admin.Paths.GEN_PROV;
-import static org.taverna.server.master.admin.Paths.INVOKES;
-import static org.taverna.server.master.admin.Paths.JAR_FORKER;
-import static org.taverna.server.master.admin.Paths.JAR_WORKER;
-import static org.taverna.server.master.admin.Paths.JAVA;
-import static org.taverna.server.master.admin.Paths.LIFE;
-import static org.taverna.server.master.admin.Paths.LOG_EXN;
-import static org.taverna.server.master.admin.Paths.LOG_WFS;
-import static org.taverna.server.master.admin.Paths.OPERATING;
-import static org.taverna.server.master.admin.Paths.OP_LIMIT;
-import static org.taverna.server.master.admin.Paths.PASSFILE;
-import static org.taverna.server.master.admin.Paths.PERM_WF;
-import static org.taverna.server.master.admin.Paths.REG_HOST;
-import static org.taverna.server.master.admin.Paths.REG_JAR;
-import static org.taverna.server.master.admin.Paths.REG_POLL;
-import static org.taverna.server.master.admin.Paths.REG_PORT;
-import static org.taverna.server.master.admin.Paths.REG_WAIT;
-import static org.taverna.server.master.admin.Paths.ROOT;
-import static org.taverna.server.master.admin.Paths.RUNS;
-import static org.taverna.server.master.admin.Paths.RUN_LIMIT;
-import static org.taverna.server.master.admin.Paths.STARTUP;
-import static org.taverna.server.master.admin.Paths.TOTAL_RUNS;
-import static org.taverna.server.master.admin.Paths.URS;
-import static org.taverna.server.master.admin.Paths.UR_FILE;
-import static org.taverna.server.master.admin.Paths.USER;
-import static org.taverna.server.master.admin.Paths.USERS;
-import static org.taverna.server.master.admin.Types.JSON;
-import static org.taverna.server.master.admin.Types.PLAIN;
-import static org.taverna.server.master.admin.Types.XML;
-
-import java.io.IOException;
-import java.net.URI;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.annotation.Nonnull;
-import javax.ws.rs.Consumes;
-import javax.ws.rs.DELETE;
-import javax.ws.rs.GET;
-import javax.ws.rs.OPTIONS;
-import javax.ws.rs.POST;
-import javax.ws.rs.PUT;
-import javax.ws.rs.Path;
-import javax.ws.rs.PathParam;
-import javax.ws.rs.Produces;
-import javax.ws.rs.core.Context;
-import javax.ws.rs.core.Response;
-import javax.ws.rs.core.UriInfo;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlType;
-
-import org.apache.cxf.jaxrs.model.wadl.Description;
-import org.ogf.usage.JobUsageRecord;
-import org.taverna.server.master.common.Uri;
-import org.taverna.server.master.common.VersionedElement;
-
-/**
- * The administration interface for Taverna Server.
- * 
- * @author Donal Fellows
- */
-@Description("Administration interface for Taverna Server.")
-public interface Admin {
-       /**
-        * Get a simple administration user interface.
-        * 
-        * @return The description document in a response.
-        * @throws IOException
-        */
-       @GET
-       @Path(ROOT)
-       @Produces("text/html")
-       @Nonnull
-       Response getUserInterface() throws IOException;
-
-       /**
-        * Gets support resources for the administration user interface.
-        * 
-        * @param file
-        *            The name of the static resource to provide.
-        * @return The requested document in a response.
-        * @throws IOException
-        */
-       @GET
-       @Path("static/{file}")
-       @Produces("*/*")
-       Response getStaticResource(@PathParam("file") String file)
-                       throws IOException;
-
-       /**
-        * Get a description of the administration interface.
-        * 
-        * @param ui
-        *            What URI was used to access this resource?
-        * @return The description document.
-        */
-       @GET
-       @Path(ROOT)
-       @Produces({ XML, JSON })
-       @Nonnull
-       AdminDescription getDescription(@Context UriInfo ui);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(ROOT)
-       Response optionsRoot();
-
-       /**
-        * Get whether to allow new workflow runs to be created.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(ALLOW_NEW)
-       @Produces(PLAIN)
-       @Description("Whether to allow new workflow runs to be created.")
-       boolean getAllowNew();
-
-       /**
-        * Set whether to allow new workflow runs to be created.
-        * 
-        * @param newValue
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(ALLOW_NEW)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Whether to allow new workflow runs to be created.")
-       boolean setAllowNew(boolean newValue);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(ALLOW_NEW)
-       @Description("Whether to allow new workflow runs to be created.")
-       Response optionsAllowNew();
-
-       /**
-        * Get whether to log the workflows submitted.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(LOG_WFS)
-       @Produces(PLAIN)
-       @Description("Whether to log the workflows submitted.")
-       boolean getLogWorkflows();
-
-       /**
-        * Set whether to log the workflows submitted.
-        * 
-        * @param logWorkflows
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(LOG_WFS)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Whether to log the workflows submitted.")
-       boolean setLogWorkflows(boolean logWorkflows);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(LOG_WFS)
-       @Description("Whether to log the workflows submitted.")
-       Response optionsLogWorkflows();
-
-       /**
-        * Get whether to log the user-directed faults.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(LOG_EXN)
-       @Produces(PLAIN)
-       @Description("Whether to log the user-directed faults.")
-       boolean getLogFaults();
-
-       /**
-        * Set whether to log the user-directed faults.
-        * 
-        * @param logFaults
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(LOG_EXN)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Whether to log the user-directed faults.")
-       boolean setLogFaults(boolean logFaults);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(LOG_EXN)
-       @Description("Whether to log the user-directed faults.")
-       Response optionsLogFaults();
-
-       /**
-        * Get what file to dump usage records to.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(UR_FILE)
-       @Produces(PLAIN)
-       @Description("What file to dump usage records to.")
-       @Nonnull
-       String getURFile();
-
-       /**
-        * Set what file to dump usage records to.
-        * 
-        * @param urFile
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(UR_FILE)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What file to dump usage records to.")
-       @Nonnull
-       String setURFile(@Nonnull String urFile);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(UR_FILE)
-       @Description("What file to dump usage records to.")
-       Response optionsURFile();
-
-       /**
-        * The property for the number of times the service methods have been
-        * invoked.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(INVOKES)
-       @Produces(PLAIN)
-       @Description("How many times have the service methods been invoked.")
-       int invokeCount();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(INVOKES)
-       @Description("How many times have the service methods been invoked.")
-       Response optionsInvokationCount();
-
-       /**
-        * The property for the number of runs that are currently in existence.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(TOTAL_RUNS)
-       @Produces(PLAIN)
-       @Description("How many runs are currently in existence.")
-       int runCount();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(TOTAL_RUNS)
-       @Description("How many runs are currently in existence.")
-       Response optionsRunCount();
-
-       /**
-        * The property for the number of runs that are currently running.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(OPERATING)
-       @Produces(PLAIN)
-       @Description("How many runs are currently actually running.")
-       int operatingCount();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(OPERATING)
-       @Description("How many runs are currently actually running.")
-       Response optionsOperatingCount();
-
-       /**
-        * Get the full pathname of the RMI registry's JAR.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(REG_JAR)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's custom RMI 
registry executable JAR file?")
-       @Nonnull
-       String getRegistryJar();
-
-       /**
-        * Set the full pathname of the RMI registry's JAR.
-        * 
-        * @param registryJar
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(REG_JAR)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's custom RMI 
registry executable JAR file?")
-       @Nonnull
-       String setRegistryJar(@Nonnull String registryJar);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(REG_JAR)
-       @Description("What is the full pathname of the server's special custom 
RMI registry executable JAR file?")
-       Response optionsRegistryJar();
-
-       /**
-        * Get the location of the RMI registry.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(REG_HOST)
-       @Produces(PLAIN)
-       @Description("Where is the RMI registry?")
-       @Nonnull
-       String getRegistryHost();
-
-       /**
-        * Set the location of the RMI registry.
-        * 
-        * @param registryHost
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(REG_HOST)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Where is the RMI registry?")
-       @Nonnull
-       String setRegistryHost(@Nonnull String registryHost);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(REG_HOST)
-       @Description("Where is the RMI registry?")
-       Response optionsRegistryHost();
-
-       /**
-        * Get the port of the RMI registry.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(REG_PORT)
-       @Produces(PLAIN)
-       @Description("On what port is the RMI registry?")
-       int getRegistryPort();
-
-       /**
-        * Set the port of the RMI registry.
-        * 
-        * @param registryPort
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(REG_PORT)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("On what port is the RMI registry?")
-       int setRegistryPort(int registryPort);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(REG_PORT)
-       @Description("On what port is the RMI registry?")
-       Response optionsRegistryPort();
-
-       /**
-        * Get the maximum number of simultaneous runs.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(RUN_LIMIT)
-       @Produces(PLAIN)
-       @Description("What is the maximum number of simultaneous runs?")
-       int getRunLimit();
-
-       /**
-        * Set the maximum number of simultaneous runs.
-        * 
-        * @param runLimit
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(RUN_LIMIT)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the maximum number of simultaneous runs?")
-       int setRunLimit(int runLimit);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(RUN_LIMIT)
-       @Description("What is the maximum number of simultaneous runs?")
-       Response optionsRunLimit();
-
-       /**
-        * Get the maximum number of simultaneous executing runs.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(OP_LIMIT)
-       @Produces(PLAIN)
-       @Description("What is the maximum number of simultaneous executing 
runs?")
-       int getOperatingLimit();
-
-       /**
-        * Set the maximum number of simultaneous executing runs.
-        * 
-        * @param operatingLimit
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(OP_LIMIT)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the maximum number of simultaneous executing 
runs?")
-       int setOperatingLimit(int operatingLimit);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(OP_LIMIT)
-       @Description("What is the maximum number of simultaneous executing 
runs?")
-       Response optionsOperatingLimit();
-
-       /**
-        * Get the default lifetime of workflow runs.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(LIFE)
-       @Produces(PLAIN)
-       @Description("What is the default lifetime of workflow runs, in 
seconds?")
-       int getDefaultLifetime();
-
-       /**
-        * Set the default lifetime of workflow runs.
-        * 
-        * @param defaultLifetime
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(LIFE)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the default lifetime of workflow runs, in 
seconds?")
-       int setDefaultLifetime(int defaultLifetime);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(LIFE)
-       @Description("What is the default lifetime of workflow runs, in 
seconds?")
-       Response optionsDefaultLifetime();
-
-       /**
-        * The property for the list of IDs of current runs.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(RUNS)
-       @Produces({ XML, JSON })
-       @Description("List the IDs of all current runs.")
-       StringList currentRuns();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(RUNS)
-       @Description("List the IDs of all current runs.")
-       Response optionsCurrentRuns();
-
-       /**
-        * Get the Java binary to be used for execution of subprocesses.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(JAVA)
-       @Produces(PLAIN)
-       @Description("Which Java binary should be used for execution of 
subprocesses?")
-       @Nonnull
-       String getJavaBinary();
-
-       /**
-        * Set the Java binary to be used for execution of subprocesses.
-        * 
-        * @param javaBinary
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(JAVA)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Which Java binary should be used for execution of 
subprocesses?")
-       @Nonnull
-       String setJavaBinary(@Nonnull String javaBinary);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(JAVA)
-       @Description("Which Java binary should be used for execution of 
subprocesses?")
-       Response optionsJavaBinary();
-
-       /**
-        * Get the extra arguments to be supplied to Java subprocesses.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(ARGS)
-       @Produces({ XML, JSON })
-       @Description("What extra arguments should be supplied to Java 
subprocesses?")
-       @Nonnull
-       StringList getExtraArguments();
-
-       /**
-        * Set the extra arguments to be supplied to Java subprocesses.
-        * 
-        * @param extraArguments
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(ARGS)
-       @Consumes(XML)
-       @Produces({ XML, JSON })
-       @Description("What extra arguments should be supplied to Java 
subprocesses?")
-       @Nonnull
-       StringList setExtraArguments(@Nonnull StringList extraArguments);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(ARGS)
-       @Description("What extra arguments should be supplied to Java 
subprocesses?")
-       Response optionsExtraArguments();
-
-       /**
-        * Get the full pathname of the worker JAR file.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(JAR_WORKER)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's per-user worker 
executable JAR file?")
-       @Nonnull
-       String getServerWorkerJar();
-
-       /**
-        * Set the full pathname of the worker JAR file.
-        * 
-        * @param serverWorkerJar
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(JAR_WORKER)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's per-user worker 
executable JAR file?")
-       @Nonnull
-       String setServerWorkerJar(@Nonnull String serverWorkerJar);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(JAR_WORKER)
-       @Description("What is the full pathname of the server's per-user worker 
executable JAR file?")
-       Response optionsServerWorkerJar();
-
-       /**
-        * Get the full pathname of the executeWorkflow.sh file.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(EXEC_WF)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the core Taverna 
executeWorkflow script?")
-       @Nonnull
-       String getExecuteWorkflowScript();
-
-       /**
-        * Set the full pathname of the executeWorkflow.sh file.
-        * 
-        * @param executeWorkflowScript
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(EXEC_WF)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the core Taverna 
executeWorkflow script?")
-       @Nonnull
-       String setExecuteWorkflowScript(@Nonnull String executeWorkflowScript);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(EXEC_WF)
-       @Description("What is the full pathname of the core Taverna 
executeWorkflow script?")
-       Response optionsExecuteWorkflowScript();
-
-       /**
-        * Get the total duration of time to wait for the start of the forker
-        * process.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(REG_WAIT)
-       @Produces(PLAIN)
-       @Description("How long in total should the core wait for registration 
of the \"forker\" process, in seconds.")
-       int getRegistrationWaitSeconds();
-
-       /**
-        * Set the total duration of time to wait for the start of the forker
-        * process.
-        * 
-        * @param registrationWaitSeconds
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(REG_WAIT)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("How long in total should the core wait for registration 
of the \"forker\" process, in seconds.")
-       int setRegistrationWaitSeconds(int registrationWaitSeconds);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(REG_WAIT)
-       @Description("How long in total should the core wait for registration 
of the \"forker\" process, in seconds.")
-       Response optionsRegistrationWaitSeconds();
-
-       /**
-        * Get the interval between checks for registration of the forker 
process.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(REG_POLL)
-       @Produces(PLAIN)
-       @Description("What is the interval between checks for registration of 
the \"forker\" process, in milliseconds.")
-       int getRegistrationPollMillis();
-
-       /**
-        * Set the interval between checks for registration of the forker 
process.
-        * 
-        * @param registrationPollMillis
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(REG_POLL)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the interval between checks for registration of 
the \"forker\" process, in milliseconds.")
-       int setRegistrationPollMillis(int registrationPollMillis);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(REG_POLL)
-       @Description("What is the interval between checks for registration of 
the \"forker\" process, in milliseconds.")
-       Response optionsRegistrationPollMillis();
-
-       /**
-        * Get the full pathname of the file containing the impersonation
-        * credentials for the forker process.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(PASSFILE)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the file containing the 
password used for impersonating other users? (On Unix, this is the password for 
the deployment user to use \"sudo\".)")
-       @Nonnull
-       String getRunasPasswordFile();
-
-       /**
-        * Set the full pathname of the file containing the impersonation
-        * credentials for the forker process.
-        * 
-        * @param runasPasswordFile
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(PASSFILE)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the file containing the 
password used for impersonating other users? (On Unix, this is the password for 
the deployment user to use \"sudo\".)")
-       @Nonnull
-       String setRunasPasswordFile(@Nonnull String runasPasswordFile);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(PASSFILE)
-       @Description("What is the full pathname of the file containing the 
password used for impersonating other users? (On Unix, this is the password for 
the deployment user to use \"sudo\".)")
-       Response optionsRunasPasswordFile();
-
-       /**
-        * Get the full pathname of the forker's JAR.
-        * 
-        * @return The current setting.
-        */
-       @GET
-       @Path(JAR_FORKER)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's special 
authorized \"forker\" executable JAR file?")
-       @Nonnull
-       String getServerForkerJar();
-
-       /**
-        * Set the full pathname of the forker's JAR.
-        * 
-        * @param serverForkerJar
-        *            What to set it to.
-        * @return The new setting.
-        */
-       @PUT
-       @Path(JAR_FORKER)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("What is the full pathname of the server's special 
authorized \"forker\" executable JAR file?")
-       @Nonnull
-       String setServerForkerJar(@Nonnull String serverForkerJar);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(JAR_FORKER)
-       @Description("What is the full pathname of the server's special 
authorized \"forker\" executable JAR file?")
-       Response optionsServerForkerJar();
-
-       /**
-        * The property for the length of time it took to start the forker.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(STARTUP)
-       @Produces(PLAIN)
-       @Description("How long did it take for the back-end \"forker\" to set 
itself up, in seconds.")
-       int startupTime();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(STARTUP)
-       @Description("How long did it take for the back-end \"forker\" to set 
itself up, in seconds.")
-       Response optionsStartupTime();
-
-       /**
-        * The property for the last exit code of the forker process.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(EXITCODE)
-       @Produces(PLAIN)
-       @Description("What was the last exit code of the \"forker\"? If null, 
no exit has ever been recorded.")
-       Integer lastExitCode();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(EXITCODE)
-       @Description("What was the last exit code of the \"forker\"? If null, 
no exit has ever been recorded.")
-       Response optionsLastExitCode();
-
-       /**
-        * The property for the mapping of usernames to factory process handles.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(FACTORIES)
-       @Produces({ XML, JSON })
-       @Description("What is the mapping of local usernames to factory process 
RMI IDs?")
-       StringList factoryProcessMapping();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(FACTORIES)
-       @Description("What is the mapping of local usernames to factory process 
RMI IDs?")
-       Response optionsFactoryProcessMapping();
-
-       /**
-        * The property for the list of usage records collected.
-        * 
-        * @return The property value (read-only).
-        */
-       @GET
-       @Path(URS)
-       @Produces(XML)
-       @Description("What is the list of usage records that have been 
collected?")
-       URList usageRecords();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(URS)
-       @Description("What is the list of usage records that have been 
collected?")
-       Response optionsUsageRecords();
-
-       /**
-        * What are the current list of workflow URIs that may be started? Empty
-        * means allow any, including user-supplied workflows.
-        * 
-        * @return List of URIs, encoded as strings.
-        */
-       @GET
-       @Path(PERM_WF)
-       @Produces({ XML, JSON })
-       @Description("What are the current list of workflow URIs that may be 
started? Empty means allow any, including user-supplied workflows.")
-       StringList getPermittedWorkflowURIs();
-
-       /** Do we turn on the generate provenance option by default? */
-       @GET
-       @Path(GEN_PROV)
-       @Produces(PLAIN)
-       @Description("Do we turn on the generate provenance option by default? 
(boolean)")
-       String getGenerateProvenance();
-
-       /** Do we turn on the generate provenance option by default? */
-       @PUT
-       @Path(GEN_PROV)
-       @Consumes(PLAIN)
-       @Produces(PLAIN)
-       @Description("Do we turn on the generate provenance option by default? 
(boolean)")
-       String setGenerateProvenance(String newValue);
-
-       /** Do we turn on the generate provenance option by default? */
-       @OPTIONS
-       @Path(GEN_PROV)
-       @Description("Do we turn on the generate provenance option by default? 
(boolean)")
-       Response optionsGenerateProvenance();
-
-       /**
-        * What are the current list of workflow URIs that may be started? Empty
-        * means allow any, including user-supplied workflows.
-        * 
-        * @param permitted
-        *            List of URIs, encoded as strings.
-        * @return List of URIs, encoded as strings.
-        */
-       @PUT
-       @Path(PERM_WF)
-       @Consumes(XML)
-       @Produces({ XML, JSON })
-       @Description("What are the current list of workflow URIs that may be 
started? Empty means allow any, including user-supplied workflows.")
-       StringList setPermittedWorkflowURIs(@Nonnull StringList permitted);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(PERM_WF)
-       @Description("What are the current list of workflow URIs that may be 
started? Empty means allow any, including user-supplied workflows.")
-       Response optionsPermittedWorkflowURIs();
-
-       @GET
-       @Path(USERS)
-       @Produces({ XML, JSON })
-       @Description("What users are known to the server?")
-       UserList users(@Context UriInfo ui);
-
-       @GET
-       @Path(USER)
-       @Produces({ XML, JSON })
-       @Description("What do we know about a particular user?")
-       UserDesc user(@PathParam("id") String username);
-
-       @POST
-       @Path(USERS)
-       @Consumes(XML)
-       @Description("Create a user.")
-       Response useradd(UserDesc userdesc, @Nonnull @Context UriInfo ui);
-
-       @PUT
-       @Path(USER)
-       @Produces({ XML, JSON })
-       @Consumes(XML)
-       @Description("Update a user.")
-       UserDesc userset(@PathParam("id") String username, UserDesc userdesc);
-
-       @DELETE
-       @Path(USER)
-       @Produces({ XML, JSON })
-       @Description("What do we know about a particular user?")
-       Response userdel(@PathParam("id") String username);
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(USERS)
-       @Description("What users are known to the server?")
-       Response optionsUsers();
-
-       /** What HTTP methods may we use? */
-       @OPTIONS
-       @Path(USER)
-       @Description("What do we know about a particular user?")
-       Response optionsUser(@PathParam("id") String username);
-
-       // -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
-
-       /**
-        * The description of what properties are supported by the 
administration
-        * interface.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "description")
-       @XmlType(name = "Description")
-       public static class AdminDescription extends VersionedElement {
-               public Uri allowNew;
-               public Uri logWorkflows;
-               public Uri logFaults;
-               public Uri usageRecordDumpFile;
-               public Uri invokationCount;
-               public Uri runCount;
-               public Uri registryHost;
-               public Uri registryPort;
-               public Uri runLimit;
-               public Uri defaultLifetime;
-               public Uri currentRuns;
-               public Uri javaBinary;
-               public Uri extraArguments;
-               public Uri serverWorkerJar;
-               public Uri serverForkerJar;
-               public Uri executeWorkflowScript;
-               public Uri registrationWaitSeconds;
-               public Uri registrationPollMillis;
-               public Uri runasPasswordFile;
-               public Uri startupTime;
-               public Uri lastExitCode;
-               public Uri factoryProcessMapping;
-               public Uri usageRecords;
-               public Uri users;
-               public Uri operatingLimit;
-               public Uri operatingCount;
-               public Uri permittedWorkflowURIs;
-               public Uri generateProvenance;
-
-               public AdminDescription() {
-               }
-
-               public AdminDescription(UriInfo ui) {
-                       allowNew = new Uri(ui, ALLOW_NEW);
-                       logWorkflows = new Uri(ui, LOG_WFS);
-                       logFaults = new Uri(ui, LOG_EXN);
-                       usageRecordDumpFile = new Uri(ui, UR_FILE);
-                       invokationCount = new Uri(ui, INVOKES);
-                       runCount = new Uri(ui, TOTAL_RUNS);
-                       registryHost = new Uri(ui, REG_HOST);
-                       registryPort = new Uri(ui, REG_PORT);
-                       runLimit = new Uri(ui, RUN_LIMIT);
-                       defaultLifetime = new Uri(ui, LIFE);
-                       currentRuns = new Uri(ui, RUNS);
-                       javaBinary = new Uri(ui, JAVA);
-                       extraArguments = new Uri(ui, ARGS);
-                       serverWorkerJar = new Uri(ui, JAR_WORKER);
-                       serverForkerJar = new Uri(ui, JAR_FORKER);
-                       executeWorkflowScript = new Uri(ui, EXEC_WF);
-                       registrationWaitSeconds = new Uri(ui, REG_WAIT);
-                       registrationPollMillis = new Uri(ui, REG_POLL);
-                       runasPasswordFile = new Uri(ui, PASSFILE);
-                       startupTime = new Uri(ui, STARTUP);
-                       lastExitCode = new Uri(ui, EXITCODE);
-                       factoryProcessMapping = new Uri(ui, FACTORIES);
-                       usageRecords = new Uri(ui, URS);
-                       users = new Uri(ui, USERS);
-                       operatingLimit = new Uri(ui, OP_LIMIT);
-                       operatingCount = new Uri(ui, OPERATING);
-                       permittedWorkflowURIs = new Uri(ui, PERM_WF);
-                       generateProvenance = new Uri(ui, GEN_PROV);
-               }
-       }
-
-       /**
-        * A list of strings, as XML.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "stringList")
-       @XmlType(name = "StringList")
-       public static class StringList {
-               @XmlElement
-               public List<String> string = new ArrayList<>();
-       }
-
-       /**
-        * A list of users, as XML.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "userList")
-       @XmlType(name = "UserList")
-       public static class UserList {
-               @XmlElement
-               public List<URI> user = new ArrayList<>();
-       }
-
-       @XmlRootElement(name = "userDesc")
-       @XmlType(name = "UserDesc")
-       public static class UserDesc {
-               @XmlElement
-               public String username;
-               @XmlElement
-               public String password;
-               @XmlElement
-               public String localUserId;
-               @XmlElement
-               public Boolean enabled;
-               @XmlElement
-               public Boolean admin;
-       }
-
-       /**
-        * A list of usage records, as XML.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "usageRecordList")
-       @XmlType(name = "UsageRecords")
-       public static class URList {
-               @XmlElement
-               public List<JobUsageRecord> usageRecord;
-       }
-}
-
-interface Paths {
-       static final String ROOT = "/";
-       static final String ALLOW_NEW = "allowNew";
-       static final String LOG_WFS = "logWorkflows";
-       static final String LOG_EXN = "logFaults";
-       static final String UR_FILE = "usageRecordDumpFile";
-       static final String INVOKES = "invokationCount";
-       static final String TOTAL_RUNS = "runCount";
-       static final String OPERATING = "operatingCount";
-       static final String REG_HOST = "registryHost";
-       static final String REG_PORT = "registryPort";
-       static final String REG_JAR = "registryJar";
-       static final String RUN_LIMIT = "runLimit";
-       static final String OP_LIMIT = "operatingLimit";
-       static final String LIFE = "defaultLifetime";
-       static final String RUNS = "currentRuns";
-       static final String JAVA = "javaBinary";
-       static final String ARGS = "extraArguments";
-       static final String JAR_WORKER = "serverWorkerJar";
-       static final String JAR_FORKER = "serverForkerJar";
-       static final String EXEC_WF = "executeWorkflowScript";
-       static final String REG_WAIT = "registrationWaitSeconds";
-       static final String REG_POLL = "registrationPollMillis";
-       static final String PASSFILE = "runasPasswordFile";
-       static final String STARTUP = "startupTime";
-       static final String EXITCODE = "lastExitCode";
-       static final String FACTORIES = "factoryProcessMapping";
-       static final String URS = "usageRecords";
-       static final String PERM_WF = "permittedWorkflowURIs";
-       static final String GEN_PROV = "generateProvenance";
-       static final String USERS = "users";
-       static final String USER = USERS + "/{id}";
-}
-
-interface Types {
-       static final String PLAIN = "text/plain";
-       static final String XML = "application/xml";
-       static final String JSON = "application/json";
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/admin/AdminBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/admin/AdminBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/admin/AdminBean.java
deleted file mode 100644
index b83d88f..0000000
--- a/server-webapp/src/main/java/org/taverna/server/master/admin/AdminBean.java
+++ /dev/null
@@ -1,794 +0,0 @@
-/*
- * Copyright (C) 2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.admin;
-
-import static java.util.Arrays.asList;
-import static java.util.UUID.randomUUID;
-import static javax.ws.rs.core.Response.created;
-import static javax.ws.rs.core.Response.noContent;
-import static javax.ws.rs.core.Response.Status.NOT_FOUND;
-import static org.taverna.server.master.common.Roles.ADMIN;
-import static org.taverna.server.master.common.Uri.secure;
-import static org.taverna.server.master.utils.RestUtils.opt;
-
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.net.URI;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.annotation.security.RolesAllowed;
-import javax.ws.rs.core.Response;
-import javax.ws.rs.core.UriBuilder;
-import javax.ws.rs.core.UriInfo;
-
-import org.apache.commons.io.IOUtils;
-import org.springframework.beans.factory.annotation.Required;
-import org.taverna.server.master.api.ManagementModel;
-import org.taverna.server.master.exceptions.GeneralFailureException;
-import org.taverna.server.master.factories.ConfigurableRunFactory;
-import org.taverna.server.master.identity.User;
-import org.taverna.server.master.identity.UserStoreAPI;
-import org.taverna.server.master.usage.UsageRecordRecorder;
-import org.taverna.server.master.utils.InvocationCounter;
-import org.taverna.server.master.worker.RunDBSupport;
-import org.taverna.server.master.worker.WorkerModel;
-
-/**
- * The administration interface to Taverna Server.
- * 
- * @author Donal Fellows
- */
-public class AdminBean implements Admin {
-       @Required
-       public void setState(ManagementModel state) {
-               this.state = state;
-       }
-
-       @Required
-       public void setCounter(InvocationCounter counter) {
-               this.counter = counter;
-       }
-
-       @Required
-       public void setRunDB(RunDBSupport runDB) {
-               this.runDB = runDB;
-       }
-
-       @Required
-       public void setFactory(ConfigurableRunFactory factory) {
-               this.factory = factory;
-       }
-
-       @Required
-       public void setUsageRecords(UsageRecordRecorder usageRecords) {
-               this.usageRecords = usageRecords;
-       }
-
-       @Required
-       public void setUserStore(UserStoreAPI userStore) {
-               this.userStore = userStore;
-       }
-
-       @Required
-       public void setLocalWorkerModel(WorkerModel worker) {
-               localWorker = worker;
-       }
-
-       public void setAdminHtmlFile(String filename) {
-               this.adminHtmlFile = filename;
-       }
-
-       public void setResourceRoot(String root) {
-               this.resourceRoot = root;
-       }
-
-       protected byte[] getResource(String name) throws IOException {
-               if (AdminBean.class.getResource(name) == null)
-                       throw new FileNotFoundException(name);
-               return 
IOUtils.toByteArray(AdminBean.class.getResourceAsStream(name));
-       }
-
-       private ManagementModel state;
-       private InvocationCounter counter;
-       private RunDBSupport runDB;
-       private ConfigurableRunFactory factory;
-       private UsageRecordRecorder usageRecords;
-       private UserStoreAPI userStore;
-       private WorkerModel localWorker;
-       private String adminHtmlFile = "/admin.html";
-       private String resourceRoot = "/static/";
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response getUserInterface() throws IOException {
-               return Response.ok(getResource(adminHtmlFile), 
"text/html").build();
-       }
-
-       @Override
-       @RolesAllowed(ADMIN)
-       public Response getStaticResource(String file) throws IOException {
-               if (file.matches("^[-_.a-zA-Z0-9]+$")) {
-                       String type = "application/octet-stream";
-                       if (file.endsWith(".html"))
-                               type = "text/html";
-                       else if (file.endsWith(".js"))
-                               type = "text/javascript";
-                       else if (file.endsWith(".jpg"))
-                               type = "image/jpeg";
-                       else if (file.endsWith(".gif"))
-                               type = "image/gif";
-                       else if (file.endsWith(".png"))
-                               type = "image/png";
-                       else if (file.endsWith(".svg"))
-                               type = "image/svg+xml";
-                       else if (file.endsWith(".css"))
-                               type = "text/css";
-                       try {
-                               return Response.ok(getResource(resourceRoot + 
file), type)
-                                               .build();
-                       } catch (IOException e) {
-                               // ignore; we just treat as 404
-                       }
-               }
-               return Response.status(NOT_FOUND).entity("no such 
resource").build();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public AdminDescription getDescription(UriInfo ui) {
-               return new AdminDescription(ui);
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRoot() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean getAllowNew() {
-               return state.getAllowNewWorkflowRuns();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean setAllowNew(boolean newValue) {
-               state.setAllowNewWorkflowRuns(newValue);
-               return state.getAllowNewWorkflowRuns();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsAllowNew() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean getLogWorkflows() {
-               return state.getLogIncomingWorkflows();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean setLogWorkflows(boolean newValue) {
-               state.setLogIncomingWorkflows(newValue);
-               return state.getLogIncomingWorkflows();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsLogWorkflows() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean getLogFaults() {
-               return state.getLogOutgoingExceptions();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public boolean setLogFaults(boolean newValue) {
-               state.setLogOutgoingExceptions(newValue);
-               return state.getLogOutgoingExceptions();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsLogFaults() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getURFile() {
-               return state.getUsageRecordLogFile();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setURFile(String newValue) {
-               state.setUsageRecordLogFile(newValue);
-               return state.getUsageRecordLogFile();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsURFile() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int invokeCount() {
-               return counter.getCount();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsInvokationCount() {
-               return opt();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int runCount() {
-               return runDB.countRuns();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRunCount() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getRegistryHost() {
-               return factory.getRegistryHost();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setRegistryHost(String newValue) {
-               factory.setRegistryHost(newValue);
-               return factory.getRegistryHost();
-       }
-
-       @Override
-       public Response optionsRegistryHost() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getRegistryPort() {
-               return factory.getRegistryPort();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setRegistryPort(int newValue) {
-               factory.setRegistryPort(newValue);
-               return factory.getRegistryPort();
-       }
-
-       @Override
-       public Response optionsRegistryPort() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getRegistryJar() {
-               return factory.getRmiRegistryJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setRegistryJar(String registryJar) {
-               factory.setRmiRegistryJar(registryJar);
-               return factory.getRmiRegistryJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRegistryJar() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getRunLimit() {
-               return factory.getMaxRuns();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setRunLimit(int newValue) {
-               factory.setMaxRuns(newValue);
-               return factory.getMaxRuns();
-       }
-
-       @Override
-       public Response optionsRunLimit() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getDefaultLifetime() {
-               return factory.getDefaultLifetime();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setDefaultLifetime(int newValue) {
-               factory.setDefaultLifetime(newValue);
-               return factory.getDefaultLifetime();
-       }
-
-       @Override
-       public Response optionsDefaultLifetime() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList currentRuns() {
-               StringList result = new StringList();
-               result.string = runDB.listRunNames();
-               return result;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsCurrentRuns() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getJavaBinary() {
-               return factory.getJavaBinary();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setJavaBinary(String newValue) {
-               factory.setJavaBinary(newValue);
-               return factory.getJavaBinary();
-       }
-
-       @Override
-       public Response optionsJavaBinary() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList getExtraArguments() {
-               String[] xargs = factory.getExtraArguments();
-               StringList result = new StringList();
-               result.string = asList(xargs == null ? new String[0] : xargs);
-               return result;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList setExtraArguments(StringList newValue) {
-               if (newValue == null || newValue.string == null)
-                       factory.setExtraArguments(new String[0]);
-               else
-                       factory.setExtraArguments(newValue.string
-                                       .toArray(new 
String[newValue.string.size()]));
-               StringList result = new StringList();
-               result.string = asList(factory.getExtraArguments());
-               return result;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsExtraArguments() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getServerWorkerJar() {
-               return factory.getServerWorkerJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setServerWorkerJar(String newValue) {
-               factory.setServerWorkerJar(newValue);
-               return factory.getServerWorkerJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsServerWorkerJar() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getExecuteWorkflowScript() {
-               return factory.getExecuteWorkflowScript();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setExecuteWorkflowScript(String newValue) {
-               factory.setExecuteWorkflowScript(newValue);
-               return factory.getExecuteWorkflowScript();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsExecuteWorkflowScript() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getRegistrationWaitSeconds() {
-               return factory.getWaitSeconds();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setRegistrationWaitSeconds(int newValue) {
-               factory.setWaitSeconds(newValue);
-               return factory.getWaitSeconds();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRegistrationWaitSeconds() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getRegistrationPollMillis() {
-               return factory.getSleepTime();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setRegistrationPollMillis(int newValue) {
-               factory.setSleepTime(newValue);
-               return factory.getSleepTime();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRegistrationPollMillis() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getRunasPasswordFile() {
-               return factory.getPasswordFile();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setRunasPasswordFile(String newValue) {
-               factory.setPasswordFile(newValue);
-               return factory.getPasswordFile();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsRunasPasswordFile() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getServerForkerJar() {
-               return factory.getServerForkerJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setServerForkerJar(String newValue) {
-               factory.setServerForkerJar(newValue);
-               return factory.getServerForkerJar();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsServerForkerJar() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int startupTime() {
-               return factory.getLastStartupCheckCount();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsStartupTime() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Integer lastExitCode() {
-               return factory.getLastExitCode();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsLastExitCode() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList factoryProcessMapping() {
-               StringList result = new StringList();
-               result.string = asList(factory.getFactoryProcessMapping());
-               return result;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsFactoryProcessMapping() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public URList usageRecords() {
-               URList result = new URList();
-               result.usageRecord = usageRecords.getUsageRecords();
-               return result;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsUsageRecords() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public UserList users(UriInfo ui) {
-               UserList ul = new UserList();
-               UriBuilder ub = secure(ui).path("{id}");
-               for (String user : userStore.getUserNames())
-                       ul.user.add(ub.build(user));
-               return ul;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsUsers() {
-               return opt("POST");
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public UserDesc user(String username) {
-               UserDesc desc = new UserDesc();
-               User u = userStore.getUser(username);
-               desc.username = u.getUsername();
-               desc.localUserId = u.getLocalUsername();
-               desc.admin = u.isAdmin();
-               desc.enabled = u.isEnabled();
-               return desc;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsUser(String username) {
-               return opt("PUT", "DELETE");
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response useradd(UserDesc userdesc, UriInfo ui) {
-               if (userdesc.username == null)
-                       throw new IllegalArgumentException("no user name 
supplied");
-               if (userdesc.password == null)
-                       userdesc.password = randomUUID().toString();
-               userStore.addUser(userdesc.username, userdesc.password, false);
-               if (userdesc.localUserId != null)
-                       userStore.setUserLocalUser(userdesc.username, 
userdesc.localUserId);
-               if (userdesc.admin != null && userdesc.admin)
-                       userStore.setUserAdmin(userdesc.username, true);
-               if (userdesc.enabled != null && userdesc.enabled)
-                       userStore.setUserEnabled(userdesc.username, true);
-               return created(secure(ui).path("{id}").build(userdesc.username))
-                               .build();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public UserDesc userset(String username, UserDesc userdesc) {
-               if (userdesc.password != null)
-                       userStore.setUserPassword(username, userdesc.password);
-               if (userdesc.localUserId != null)
-                       userStore.setUserLocalUser(username, 
userdesc.localUserId);
-               if (userdesc.admin != null)
-                       userStore.setUserAdmin(username, userdesc.admin);
-               if (userdesc.enabled != null)
-                       userStore.setUserEnabled(username, userdesc.enabled);
-               userdesc = null; // Stop reuse!
-
-               UserDesc desc = new UserDesc();
-               User u = userStore.getUser(username);
-               desc.username = u.getUsername();
-               desc.localUserId = u.getLocalUsername();
-               desc.admin = u.isAdmin();
-               desc.enabled = u.isEnabled();
-               return desc;
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response userdel(String username) {
-               userStore.deleteUser(username);
-               return noContent().build();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int operatingCount() {
-               try {
-                       return factory.getOperatingCount();
-               } catch (Exception e) {
-                       throw new GeneralFailureException(e);
-               }
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsOperatingCount() {
-               return opt();
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int getOperatingLimit() {
-               return factory.getOperatingLimit();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public int setOperatingLimit(int operatingLimit) {
-               factory.setOperatingLimit(operatingLimit);
-               return factory.getOperatingLimit();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsOperatingLimit() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList getPermittedWorkflowURIs() {
-               StringList sl = new StringList();
-               List<URI> uris = localWorker.getPermittedWorkflowURIs();
-               if (uris != null)
-                       for (URI uri : uris)
-                               sl.string.add(uri.toString());
-               return sl;
-       }
-
-       private static final URI myExp = 
URI.create("http://www.myexperment.org/";);
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public StringList setPermittedWorkflowURIs(StringList permitted) {
-               List<URI> uris = new ArrayList<>();
-               for (String uri : permitted.string)
-                       try {
-                               uris.add(myExp.resolve(uri));
-                       } catch (Exception e) {
-                               // Ignore
-                       }
-               localWorker.setPermittedWorkflowURIs(uris);
-               return getPermittedWorkflowURIs();
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsPermittedWorkflowURIs() {
-               return opt("PUT");
-       }
-
-       // /////////////////////////////////////////////////////
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String getGenerateProvenance() {
-               return Boolean.toString(localWorker.getGenerateProvenance());
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public String setGenerateProvenance(String newValue) {
-               boolean b = Boolean.parseBoolean(newValue);
-               localWorker.setGenerateProvenance(b);
-               return Boolean.toString(localWorker.getGenerateProvenance());
-       }
-
-       @RolesAllowed(ADMIN)
-       @Override
-       public Response optionsGenerateProvenance() {
-               return opt("PUT");
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/admin/package-info.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/admin/package-info.java 
b/server-webapp/src/main/java/org/taverna/server/master/admin/package-info.java
deleted file mode 100644
index 930fd75..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/admin/package-info.java
+++ /dev/null
@@ -1,33 +0,0 @@
-/*
- * Copyright (C) 2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-/**
- * This package contains the RESTful administration interface to Taverna 
Server.
- * @author Donal Fellows
- */
-@XmlSchema(namespace = ADMIN, elementFormDefault = QUALIFIED, 
attributeFormDefault = QUALIFIED, xmlns = {
-               @XmlNs(prefix = "xlink", namespaceURI = XLINK),
-               @XmlNs(prefix = "ts", namespaceURI = SERVER),
-               @XmlNs(prefix = "ts-rest", namespaceURI = SERVER_REST),
-               @XmlNs(prefix = "ts-soap", namespaceURI = SERVER_SOAP),
-               @XmlNs(prefix = "feed", namespaceURI = FEED),
-               @XmlNs(prefix = "admin", namespaceURI = ADMIN),
-               @XmlNs(prefix = "ur", namespaceURI = UR),
-               @XmlNs(prefix = "ds", namespaceURI = XSIG) })
-package org.taverna.server.master.admin;
-
-import static javax.xml.bind.annotation.XmlNsForm.QUALIFIED;
-import static org.taverna.server.master.common.Namespaces.ADMIN;
-import static org.taverna.server.master.common.Namespaces.FEED;
-import static org.taverna.server.master.common.Namespaces.SERVER;
-import static org.taverna.server.master.common.Namespaces.SERVER_REST;
-import static org.taverna.server.master.common.Namespaces.SERVER_SOAP;
-import static org.taverna.server.master.common.Namespaces.UR;
-import static org.taverna.server.master.common.Namespaces.XLINK;
-import static org.taverna.server.master.common.Namespaces.XSIG;
-
-import javax.xml.bind.annotation.XmlNs;
-import javax.xml.bind.annotation.XmlSchema;
-

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/ContentTypes.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/ContentTypes.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/ContentTypes.java
deleted file mode 100644
index 1a89b8d..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/ContentTypes.java
+++ /dev/null
@@ -1,50 +0,0 @@
-/*
- * Copyright (C) 2010-2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.api;
-
-import static java.util.Arrays.asList;
-import static java.util.Collections.singletonList;
-import static javax.ws.rs.core.MediaType.APPLICATION_JSON_TYPE;
-import static javax.ws.rs.core.MediaType.APPLICATION_OCTET_STREAM_TYPE;
-import static javax.ws.rs.core.MediaType.APPLICATION_XML_TYPE;
-
-import java.util.List;
-
-import javax.ws.rs.core.MediaType;
-import javax.ws.rs.core.Variant;
-
-/**
- * The content types supported at various points in the REST interface.
- * 
- * @author Donal Fellows
- */
-public interface ContentTypes {
-       /** "application/zip" */
-       public static final MediaType APPLICATION_ZIP_TYPE = new MediaType(
-                       "application", "zip");
-
-       /** "application/vnd.taverna.baclava+xml" */
-       public static final MediaType BACLAVA_MEDIA_TYPE = new MediaType(
-                       "application", "vnd.taverna.baclava+xml");
-
-       /**
-        * The media types that we are willing to serve up directories as. Note 
that
-        * we <i>only</i> serve directories up as these.
-        */
-       public static final List<Variant> DIRECTORY_VARIANTS = asList(new 
Variant(
-                       APPLICATION_XML_TYPE, (String) null, "UTF-8"), new 
Variant(
-                       APPLICATION_JSON_TYPE, (String) null, "UTF-8"), new 
Variant(
-                       APPLICATION_ZIP_TYPE, (String) null, null));
-
-       /**
-        * The baseline set of media types that we are willing to serve up 
files as.
-        * Note that we <i>also</i> serve files up as their auto-detected media
-        * type. In all cases, this means we just shovel the bytes (or 
characters,
-        * in the case of <tt>text/*</tt> subtypes) back at the client.
-        */
-       public static final List<Variant> INITIAL_FILE_VARIANTS = 
singletonList(new Variant(
-                       APPLICATION_OCTET_STREAM_TYPE, (String) null, null));
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/DirectoryBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/DirectoryBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/DirectoryBean.java
deleted file mode 100644
index 8fa5c78..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/DirectoryBean.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.rest.TavernaServerDirectoryREST;
-import org.taverna.server.master.interfaces.TavernaRun;
-import org.taverna.server.master.utils.FilenameUtils;
-
-/**
- * Description of properties supported by {@link DirectoryREST}.
- * 
- * @author Donal Fellows
- */
-public interface DirectoryBean extends SupportAware {
-       void setFileUtils(FilenameUtils fileUtils);
-
-       TavernaServerDirectoryREST connect(TavernaRun run);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/FeedBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/FeedBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/FeedBean.java
deleted file mode 100644
index 5ace6a3..0000000
--- a/server-webapp/src/main/java/org/taverna/server/master/api/FeedBean.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.InteractionFeed;
-import org.taverna.server.master.interaction.InteractionFeedSupport;
-
-/**
- * Description of properties supported by {@link InteractionFeed}.
- * 
- * @author Donal Fellows
- */
-public interface FeedBean {
-       void setInteractionFeedSupport(InteractionFeedSupport feed);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/InputBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/InputBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/InputBean.java
deleted file mode 100644
index eecea44..0000000
--- a/server-webapp/src/main/java/org/taverna/server/master/api/InputBean.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package org.taverna.server.master.api;
-
-import javax.ws.rs.core.UriInfo;
-
-import org.taverna.server.master.ContentsDescriptorBuilder;
-import org.taverna.server.master.interfaces.TavernaRun;
-import org.taverna.server.master.rest.TavernaServerInputREST;
-import org.taverna.server.master.utils.FilenameUtils;
-
-/**
- * Description of properties supported by {@link InputREST}.
- * 
- * @author Donal Fellows
- */
-public interface InputBean extends SupportAware {
-       TavernaServerInputREST connect(TavernaRun run, UriInfo ui);
-
-       void setCdBuilder(ContentsDescriptorBuilder cd);
-
-       void setFileUtils(FilenameUtils fn);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/ListenerPropertyBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/ListenerPropertyBean.java
 
b/server-webapp/src/main/java/org/taverna/server/master/api/ListenerPropertyBean.java
deleted file mode 100644
index 5c480d4..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/ListenerPropertyBean.java
+++ /dev/null
@@ -1,15 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.interfaces.Listener;
-import org.taverna.server.master.interfaces.TavernaRun;
-import org.taverna.server.master.rest.TavernaServerListenersREST;
-
-/**
- * Description of properties supported by {@link ListenerPropertyREST}.
- * 
- * @author Donal Fellows
- */
-public interface ListenerPropertyBean extends SupportAware {
-       TavernaServerListenersREST.Property connect(Listener listen,
-                       TavernaRun run, String propertyName);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/ListenersBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/ListenersBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/ListenersBean.java
deleted file mode 100644
index c02bf62..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/ListenersBean.java
+++ /dev/null
@@ -1,13 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.interfaces.TavernaRun;
-import org.taverna.server.master.rest.TavernaServerListenersREST;
-
-/**
- * Description of properties supported by {@link ListenersREST}.
- * 
- * @author Donal Fellows
- */
-public interface ListenersBean extends SupportAware {
-       TavernaServerListenersREST connect(TavernaRun run);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/ManagementModel.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/ManagementModel.java
 
b/server-webapp/src/main/java/org/taverna/server/master/api/ManagementModel.java
deleted file mode 100644
index 6bc6058..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/ManagementModel.java
+++ /dev/null
@@ -1,61 +0,0 @@
-/*
- * Copyright (C) 2010-2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.api;
-
-/**
- * The model of the webapp's state Java Bean.
- * 
- * @author Donal Fellows
- */
-public interface ManagementModel {
-       /**
-        * @return whether we allow the creation of new workflow runs.
-        */
-       boolean getAllowNewWorkflowRuns();
-
-       /**
-        * @return whether we should log all workflows sent to us.
-        */
-       boolean getLogIncomingWorkflows();
-
-       /**
-        * @return whether outgoing exceptions should be logged before being
-        *         converted to responses.
-        */
-       boolean getLogOutgoingExceptions();
-
-       /**
-        * @return the file that all usage records should be appended to, or
-        *         <tt>null</tt> if they should be just dropped.
-        */
-       String getUsageRecordLogFile();
-
-       /**
-        * @param logIncomingWorkflows
-        *            whether we should log all workflows sent to us.
-        */
-       void setLogIncomingWorkflows(boolean logIncomingWorkflows);
-
-       /**
-        * @param allowNewWorkflowRuns
-        *            whether we allow the creation of new workflow runs.
-        */
-       void setAllowNewWorkflowRuns(boolean allowNewWorkflowRuns);
-
-       /**
-        * @param logOutgoingExceptions
-        *            whether outgoing exceptions should be logged before being
-        *            converted to responses.
-        */
-       void setLogOutgoingExceptions(boolean logOutgoingExceptions);
-
-       /**
-        * @param usageRecordLogFile
-        *            the file that all usage records should be appended to, or
-        *            <tt>null</tt> if they should be just dropped.
-        */
-       void setUsageRecordLogFile(String usageRecordLogFile);
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/OneListenerBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/OneListenerBean.java
 
b/server-webapp/src/main/java/org/taverna/server/master/api/OneListenerBean.java
deleted file mode 100644
index 9f80a12..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/OneListenerBean.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.interfaces.Listener;
-import org.taverna.server.master.interfaces.TavernaRun;
-import 
org.taverna.server.master.rest.TavernaServerListenersREST.TavernaServerListenerREST;
-
-/**
- * Description of properties supported by {@link InputREST}.
- * 
- * @author Donal Fellows
- */
-public interface OneListenerBean {
-       TavernaServerListenerREST connect(Listener listen, TavernaRun run);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/RunBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/RunBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/RunBean.java
deleted file mode 100644
index 4903ea9..0000000
--- a/server-webapp/src/main/java/org/taverna/server/master/api/RunBean.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.ContentsDescriptorBuilder;
-import org.taverna.server.master.interfaces.TavernaRun;
-
-/**
- * Description of properties supported by {@link RunREST}.
- * 
- * @author Donal Fellows
- */
-public interface RunBean extends SupportAware {
-       void setCdBuilder(ContentsDescriptorBuilder cdBuilder);
-
-       void setRun(TavernaRun run);
-
-       void setRunName(String runName);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/SecurityBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/SecurityBean.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/SecurityBean.java
deleted file mode 100644
index 04fbd6e..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/SecurityBean.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.taverna.server.master.interfaces.TavernaRun;
-import org.taverna.server.master.interfaces.TavernaSecurityContext;
-import org.taverna.server.master.rest.TavernaServerSecurityREST;
-
-/**
- * Description of properties supported by {@link RunSecurityREST}.
- * 
- * @author Donal Fellows
- */
-public interface SecurityBean extends SupportAware {
-       TavernaServerSecurityREST connect(TavernaSecurityContext context, 
TavernaRun run);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/SupportAware.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/SupportAware.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/SupportAware.java
deleted file mode 100644
index c632657..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/SupportAware.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package org.taverna.server.master.api;
-
-import org.springframework.beans.factory.annotation.Required;
-import org.taverna.server.master.TavernaServerSupport;
-
-/**
- * Indicates that this is a class that wants to be told by Spring about the
- * main support bean.
- * 
- * @author Donal Fellows
- */
-public interface SupportAware {
-       /**
-        * How to tell the bean about the support bean.
-        * 
-        * @param support
-        *            Reference to the support bean.
-        */
-       @Required
-       void setSupport(TavernaServerSupport support);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/TavernaServerBean.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/TavernaServerBean.java
 
b/server-webapp/src/main/java/org/taverna/server/master/api/TavernaServerBean.java
deleted file mode 100644
index 5a14fb6..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/TavernaServerBean.java
+++ /dev/null
@@ -1,101 +0,0 @@
-/*
- * Copyright (C) 2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.api;
-
-import javax.annotation.Nonnull;
-
-import org.springframework.beans.factory.annotation.Required;
-import org.taverna.server.master.ContentsDescriptorBuilder;
-import org.taverna.server.master.TavernaServerSupport;
-import org.taverna.server.master.interfaces.Policy;
-import org.taverna.server.master.interfaces.RunStore;
-import org.taverna.server.master.interfaces.TavernaSecurityContext;
-import org.taverna.server.master.interfaces.UriBuilderFactory;
-import org.taverna.server.master.notification.NotificationEngine;
-import org.taverna.server.master.notification.atom.EventDAO;
-import org.taverna.server.master.rest.TavernaServerREST;
-import org.taverna.server.master.soap.TavernaServerSOAP;
-import org.taverna.server.master.utils.FilenameUtils;
-
-/**
- * The methods of the webapp that are accessed by beans other than itself or
- * those which are told directly about it. This exists so that an AOP proxy can
- * be installed around it.
- * 
- * @author Donal Fellows
- */
-public interface TavernaServerBean extends TavernaServerSOAP, 
TavernaServerREST,
-               UriBuilderFactory {
-       /**
-        * @param policy
-        *            The policy being installed by Spring.
-        */
-       @Required
-       void setPolicy(@Nonnull Policy policy);
-
-       /**
-        * @param runStore
-        *            The run store being installed by Spring.
-        */
-       @Required
-       void setRunStore(@Nonnull RunStore runStore);
-
-       /**
-        * @param converter
-        *            The filename converter being installed by Spring.
-        */
-       @Required
-       void setFileUtils(@Nonnull FilenameUtils converter);
-
-       /**
-        * @param cdBuilder
-        *            The contents descriptor builder being installed by Spring.
-        */
-       @Required
-       void setContentsDescriptorBuilder(
-                       @Nonnull ContentsDescriptorBuilder cdBuilder);
-
-       /**
-        * @param notificationEngine
-        *            The notification engine being installed by Spring.
-        */
-       @Required
-       void setNotificationEngine(@Nonnull NotificationEngine 
notificationEngine);
-
-       /**
-        * @param support
-        *            The support bean being installed by Spring.
-        */
-       @Required
-       void setSupport(@Nonnull TavernaServerSupport support);
-
-       /**
-        * @param eventSource
-        *            The event source bean being installed by Spring.
-        */
-       @Required
-       void setEventSource(@Nonnull EventDAO eventSource);
-
-       /**
-        * The nastier parts of security initialisation in SOAP calls, which we 
want
-        * to go away.
-        * 
-        * @param context
-        *            The context to configure.
-        * @return True if we did <i>not</i> initialise things.
-        */
-       boolean initObsoleteSOAPSecurity(@Nonnull TavernaSecurityContext 
context);
-
-       /**
-        * The nastier parts of security initialisation in REST calls, which we 
want
-        * to go away.
-        * 
-        * @param context
-        *            The context to configure.
-        * @return True if we did <i>not</i> initialise things.
-        */
-       boolean initObsoleteRESTSecurity(@Nonnull TavernaSecurityContext 
context);
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/api/package-info.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/api/package-info.java 
b/server-webapp/src/main/java/org/taverna/server/master/api/package-info.java
deleted file mode 100644
index fe76a09..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/api/package-info.java
+++ /dev/null
@@ -1,6 +0,0 @@
-/**
- * API <tt>interface</tt>s for the main service classes.
- * 
- * @author Donal Fellows
- */
-package org.taverna.server.master.api;
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/Capability.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/Capability.java 
b/server-webapp/src/main/java/org/taverna/server/master/common/Capability.java
deleted file mode 100644
index 034d489..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/Capability.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package org.taverna.server.master.common;
-
-import java.net.URI;
-
-import javax.xml.bind.annotation.XmlAttribute;
-import javax.xml.bind.annotation.XmlSchemaType;
-import javax.xml.bind.annotation.XmlType;
-
-/**
- * Describes a single capability supported by Taverna Server's workflow
- * execution core.
- * 
- * @author Donal Fellows
- */
-@XmlType(name = "Capability")
-public class Capability {
-       @XmlAttribute
-       @XmlSchemaType(name = "anyURI")
-       public URI capability;
-       @XmlAttribute
-       public String version;
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/Credential.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/Credential.java 
b/server-webapp/src/main/java/org/taverna/server/master/common/Credential.java
deleted file mode 100644
index 5c16e79..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/Credential.java
+++ /dev/null
@@ -1,149 +0,0 @@
-/*
- * Copyright (C) 2011-2012 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.common;
-
-import static org.taverna.server.master.common.Namespaces.XLINK;
-
-import java.io.Serializable;
-import java.net.URI;
-import java.security.Key;
-import java.security.cert.Certificate;
-
-import javax.xml.bind.annotation.XmlAttribute;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlSchemaType;
-import javax.xml.bind.annotation.XmlSeeAlso;
-import javax.xml.bind.annotation.XmlTransient;
-import javax.xml.bind.annotation.XmlType;
-
-import javax.annotation.Nonnull;
-
-/**
- * A description of a private credential. This description is characterised by 
a
- * file visible to the workflow run that contains a particular key-pair.
- * 
- * @author Donal Fellows
- */
-@XmlType(name = "CredentialDescriptor")
-@XmlSeeAlso({ Credential.KeyPair.class, Credential.Password.class })
-@SuppressWarnings("serial")
-public abstract class Credential implements Serializable {
-       /** The location of this descriptor in the REST world. */
-       @XmlAttribute(namespace = XLINK)
-       public String href;
-       /**
-        * The location of this descriptor in the SOAP world. Must match 
corrected
-        * with the {@link #href} field.
-        */
-       @XmlTransient
-       public String id;
-       /**
-        * The service URI to use this credential with. If omitted, this 
represents
-        * the <i>default</i> credential to use.
-        */
-       @XmlElement
-       @XmlSchemaType(name = "anyURI")
-       public URI serviceURI;
-       /** The key extracted from the keystore. */
-       public transient Key loadedKey;
-       /** The trust chain of the key extracted from the keystore. */
-       public transient Certificate[] loadedTrustChain;
-
-       @Override
-       public int hashCode() {
-               return id.hashCode();
-       }
-
-       @Override
-       public final boolean equals(Object o) {
-               if (o == null || !(o instanceof Credential))
-                       return false;
-               return equals((Credential) o);
-       }
-
-       protected boolean equals(@Nonnull Credential c) {
-               return id.equals(c.id);
-       }
-
-       /**
-        * A description of a credential that is a public/private key-pair in 
some
-        * kind of key store.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "keypair")
-       @XmlType(name = "KeyPairCredential")
-       public static class KeyPair extends Credential {
-               /** The name of the credential within its store, i.e., it's 
alias. */
-               @XmlElement(required = true)
-               public String credentialName;
-               /**
-                * The keystore file containing the credential. This is 
resolved with
-                * respect to the workflow run working directory.
-                */
-               @XmlElement
-               public String credentialFile;
-               /**
-                * The type of keystore file. Defaults to <tt>JKS</tt> if 
unspecified.
-                */
-               @XmlElement
-               public String fileType;
-               /**
-                * The password used to unlock the keystore file. It is assumed 
that the
-                * same password is used for unlocking the credential within, 
or that
-                * the inner password is empty.
-                */
-               @XmlElement
-               public String unlockPassword;
-               /**
-                * The encoded serialized keystore containing the credential.
-                */
-               @XmlElement
-               public byte[] credentialBytes;
-
-               @Override
-               public String toString() {
-                       return "keypair(id=" + id + ")";
-               }
-       }
-
-       /**
-        * A description of a credential that is a username and password.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlRootElement(name = "userpass")
-       @XmlType(name = "PasswordCredential")
-       public static class Password extends Credential {
-               @XmlElement(required = true)
-               public String username;
-               @XmlElement(required = true)
-               public String password;
-
-               @Override
-               public String toString() {
-                       return "userpass(id=" + id + ")";
-               }
-       }
-
-       /**
-        * A credential that is just used for deleting credentials by ID. 
Cannot be
-        * marshalled as XML.
-        * 
-        * @author Donal Fellows
-        */
-       public static class Dummy extends Credential {
-               public Dummy(String id) {
-                       this.id = id;
-               }
-
-               @Override
-               public String toString() {
-                       return "dummy(id=" + id + ")";
-               }
-       }
-}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/DirEntryReference.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/DirEntryReference.java
 
b/server-webapp/src/main/java/org/taverna/server/master/common/DirEntryReference.java
deleted file mode 100644
index 318ae4f..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/DirEntryReference.java
+++ /dev/null
@@ -1,93 +0,0 @@
-/*
- * Copyright (C) 2010 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.common;
-
-import static org.taverna.server.master.common.Namespaces.XLINK;
-
-import java.net.URI;
-
-import javax.ws.rs.core.UriBuilder;
-import javax.xml.bind.annotation.XmlAttribute;
-import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlSchemaType;
-import javax.xml.bind.annotation.XmlSeeAlso;
-import javax.xml.bind.annotation.XmlType;
-import javax.xml.bind.annotation.XmlValue;
-
-import org.taverna.server.master.interfaces.Directory;
-import org.taverna.server.master.interfaces.DirectoryEntry;
-
-/**
- * A reference to something that is in a directory below the working directory
- * of a workflow run, described using JAXB. Note that when creating an XML
- * document containing one of these in a client, it is <i>not</i> necessary to
- * supply any attribute.
- * 
- * @author Donal Fellows
- */
-@XmlType(name = "DirectoryEntry")
-@XmlSeeAlso( { DirEntryReference.DirectoryReference.class,
-               DirEntryReference.FileReference.class })
-public class DirEntryReference {
-       /** A link to the entry. Ignored on input. */
-       @XmlAttribute(name = "href", namespace = XLINK)
-       @XmlSchemaType(name = "anyURI")
-       public URI link;
-       /** The last, user-displayable part of the name. Ignored on input. */
-       @XmlAttribute
-       public String name;
-       /** The path of the entry. */
-       @XmlValue
-       public String path;
-
-       /**
-        * Return the directory entry reference instance subclass suitable for 
the
-        * given directory entry.
-        * 
-        * @param entry
-        *            The entry to characterise.
-        * @return An object that describes the directory entry.
-        */
-       public static DirEntryReference newInstance(DirectoryEntry entry) {
-               return newInstance(null, entry);
-       }
-
-       /**
-        * Return the directory entry reference instance subclass suitable for 
the
-        * given directory entry.
-        * 
-        * @param ub
-        *            Used for constructing URIs. The {@link #link} field is not
-        *            filled in if this is <tt>null</tt>.
-        * @param entry
-        *            The entry to characterise.
-        * @return An object that describes the directory entry.
-        */
-       // Really returns a subclass, so cannot be constructor
-       public static DirEntryReference newInstance(UriBuilder ub,
-                       DirectoryEntry entry) {
-               DirEntryReference de = (entry instanceof Directory) ? new 
DirectoryReference()
-                               : new FileReference();
-               de.name = entry.getName();
-               String fullname = entry.getFullName();
-               de.path = fullname.startsWith("/") ? fullname.substring(1) : 
fullname;
-               if (ub != null)
-                       de.link = ub.build(entry.getName());
-               return de;
-       }
-
-       /** A reference to a directory, done with JAXB. */
-       @XmlRootElement(name = "dir")
-       @XmlType(name = "DirectoryReference")
-       public static class DirectoryReference extends DirEntryReference {
-       }
-
-       /** A reference to a file, done with JAXB. */
-       @XmlRootElement(name = "file")
-       @XmlType(name = "FileReference")
-       public static class FileReference extends DirEntryReference {
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/InputDescription.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/InputDescription.java
 
b/server-webapp/src/main/java/org/taverna/server/master/common/InputDescription.java
deleted file mode 100644
index bb98d6d..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/InputDescription.java
+++ /dev/null
@@ -1,110 +0,0 @@
-/*
- * Copyright (C) 2010 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.common;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.xml.bind.annotation.XmlAttribute;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
-import javax.xml.bind.annotation.XmlType;
-import javax.xml.bind.annotation.XmlValue;
-
-import org.taverna.server.master.interfaces.Input;
-import org.taverna.server.master.interfaces.TavernaRun;
-
-/**
- * A description of the inputs to a workflow, described using JAXB.
- * 
- * @author Donal Fellows
- */
-@XmlRootElement(name = "inputConfiguration")
-@XmlType(name = "InputConfigurationDescription")
-public class InputDescription extends VersionedElement {
-       /**
-        * The Baclava file handling the description of the elements. May be
-        * omitted/<tt>null</tt>.
-        */
-       @XmlElement(required = false)
-       public String baclavaFile;
-       /**
-        * The port/value assignment.
-        */
-       @XmlElement(nillable = false)
-       public List<Port> port = new ArrayList<>();
-
-       /**
-        * Make a blank input description.
-        */
-       public InputDescription() {
-       }
-
-       /**
-        * Make an input description suitable for the given workflow run.
-        * 
-        * @param run
-        */
-       public InputDescription(TavernaRun run) {
-               super(true);
-               baclavaFile = run.getInputBaclavaFile();
-               if (baclavaFile == null)
-                       for (Input i : run.getInputs())
-                               port.add(new Port(i));
-       }
-
-       /**
-        * The type of a single port description.
-        * 
-        * @author Donal Fellows
-        */
-       @XmlType(name = "PortConfigurationDescription")
-       public static class Port {
-               /**
-                * The name of this port.
-                */
-               @XmlAttribute(name = "portName", required = true)
-               public String name;
-               /**
-                * The file assigned to this port.
-                */
-               @XmlAttribute(name = "portFile", required = false)
-               public String file;
-               /**
-                * The file assigned to this port.
-                */
-               @XmlAttribute(name = "listDelimiter", required = false)
-               public String delimiter;
-               /**
-                * The value assigned to this port.
-                */
-               @XmlValue
-               public String value;
-
-               /**
-                * Make a blank port description.
-                */
-               public Port() {
-               }
-
-               /**
-                * Make a port description suitable for the given input.
-                * 
-                * @param input
-                */
-               public Port(Input input) {
-                       name = input.getName();
-                       if (input.getFile() != null) {
-                               file = input.getFile();
-                               value = "";
-                       } else {
-                               file = null;
-                               value = input.getValue();
-                       }
-                       delimiter = input.getDelimiter();
-               }
-       }
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/Namespaces.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/Namespaces.java 
b/server-webapp/src/main/java/org/taverna/server/master/common/Namespaces.java
deleted file mode 100644
index 1311272..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/Namespaces.java
+++ /dev/null
@@ -1,39 +0,0 @@
-/*
- * Copyright (C) 2010-2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.common;
-
-/**
- * A convenient place to keep the names of URIs so that they can be got right
- * <i>once</i>.
- * 
- * @author Donal Fellows
- */
-public interface Namespaces {
-       /**
-        * The XLink specification's namespace name.
-        */
-       public static final String XLINK = "http://www.w3.org/1999/xlink";;
-       /**
-        * The XML Digital Signature specification's namespace name.
-        */
-       public static final String XSIG = "http://www.w3.org/2000/09/xmldsig#";;
-       /**
-        * The Usage Record specification's namespace name.
-        */
-       public static final String UR = "http://schema.ogf.org/urf/2003/09/urf";;
-       /**
-        * The T2flow document format's namespace name.
-        */
-       public static final String T2FLOW = 
"http://taverna.sf.net/2008/xml/t2flow";;
-       /**
-        * The namespace for the server.
-        */
-       public static final String SERVER = 
"http://ns.taverna.org.uk/2010/xml/server/";;
-       public static final String SERVER_REST = SERVER + "rest/";
-       public static final String SERVER_SOAP = SERVER + "soap/";
-       public static final String FEED = SERVER + "feed/";
-       public static final String ADMIN = SERVER + "admin/";
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/2c71f9a9/server-webapp/src/main/java/org/taverna/server/master/common/Permission.java
----------------------------------------------------------------------
diff --git 
a/server-webapp/src/main/java/org/taverna/server/master/common/Permission.java 
b/server-webapp/src/main/java/org/taverna/server/master/common/Permission.java
deleted file mode 100644
index 258bfd0..0000000
--- 
a/server-webapp/src/main/java/org/taverna/server/master/common/Permission.java
+++ /dev/null
@@ -1,43 +0,0 @@
-/*
- * Copyright (C) 2011 The University of Manchester
- * 
- * See the file "LICENSE" for license terms.
- */
-package org.taverna.server.master.common;
-
-import javax.xml.bind.annotation.XmlEnum;
-import javax.xml.bind.annotation.XmlEnumValue;
-import javax.xml.bind.annotation.XmlType;
-
-/**
- * Description of a permission to access a particular workflow run. Note that
- * users always have full access to their own runs, as does any user with the "
- * <tt>{@value org.taverna.server.master.common.Roles#ADMIN}</tt>" ability.
- * 
- * @author Donal Fellows
- */
-@XmlType(name = "Permission")
-@XmlEnum
-public enum Permission {
-       /** Indicates that a user cannot see the workflow run at all. */
-       @XmlEnumValue("none")
-       None,
-       /**
-        * Indicates that a user can see the workflow run and its contents, but
-        * can't modify anything.
-        */
-       @XmlEnumValue("read")
-       Read,
-       /**
-        * Indicates that a user can update most aspects of a workflow, but 
cannot
-        * work with either its security features or its lifetime.
-        */
-       @XmlEnumValue("update")
-       Update,
-       /**
-        * Indicates that a user can update almost all aspects of a workflow, 
with
-        * only its security features being shrouded.
-        */
-       @XmlEnumValue("destroy")
-       Destroy
-}
\ No newline at end of file

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