Modified:
websites/staging/taverna/trunk/content/documentation/service-sets/index.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/service-sets/index.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/service-sets/index.html
Wed Mar 11 08:37:10 2015
@@ -104,150 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Service sets</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>A service set is a collection of services
that have something in common,
- for example a compatible functionality or suitability for a domain.</p>
-<p>You can save the set of services that are in the
- <a href="/documentation/glossary#service_panel">Service Panel</a> of the
Workbench by right-clicking on
- <em>Available Services</em> in the Service Panel.</p>
-<p>You can add a set of services to the Service Panel by right-clicking on
<em>Available Services</em>.
-The service set can either be specified in a file, or downloaded from a URL on
the Web that
- points to the service description file.
-You have the choice to replace your current set of services, or to add to your
set of services.</p>
-<p>Note that the service templates and local services are not removed when you
replace your service
- set.</p>
-<p>Currently available service sets include:</p>
-<ul>
-<li>
-<p><a href="http://www.myexperiment.org/packs/132.html";>NCBI Entrez Utilities
Web service set</a> -
- a set of
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html";>NCBI
Entrez services</a>
- providing access to
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/egquery_help.html";>EGQuery</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/esummary_help.html";>ESummary</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/einfo_help.html";>EInfo</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/elink_help.html";>ELink</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html";>ESearch</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/espell_help.html";>ESpell</a>,
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/epost_help.html";>EPost</a>
and
- <a
href="http://www.ncbi.nlm.nih.gov/entrez/query/static/efetch_help.html";>EFetch</a>
utilities.</p>
-</li>
-<li>
-<p><a href="http://www.myexperiment.org/packs/135.html";>Chemistry Web service
set</a> -
- a set of Web services for chemistry provided by
- <a href="/introduction/chemistry-web-services#chemspider">ChemSpider</a>,
- <a href="/introduction/chemistry-web-services#chebi">ChEBI</a> and <br />
-<a href="/introduction/chemistry-web-services#pubchem">PubChem</a>.</p>
-</li>
-</ul>
-<p>You can also find <a
href="http://www.myexperiment.org/tags/1963.html";>service sets on
myExperiment</a>.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified:
websites/staging/taverna/trunk/content/documentation/taverna-galaxy/index.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/taverna-galaxy/index.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/taverna-galaxy/index.html
Wed Mar 11 08:37:10 2015
@@ -104,149 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Taverna Galaxy</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>Galaxy is an open, Web-based platform for
data intensive biomedical research.
-Taverna 2-Galaxy integration is a first step towards making <a
href="http://galaxy.psu.edu/";>Galaxy</a>
- and Taverna 2 more interoperable.
-It allows the automatic generation of Galaxy tools from Taverna workflows.
-The tools can then be installed as usual in a Galaxy server and allow the
Taverna workflows to
-become part of a Galaxy pipeline.
-It has been developed by Kostas Karasavvas of <a
href="http://www.nbic.nl/";>NBIC</a>.</p>
-<p>Users do not need to install Taverna Galaxy themselves.
-It is available as part of the myExperiment <a
href="http://www.myexperiment.org/";>Web site</a>.
-While browsing Taverna workflows the user will see an additional link
- âDownload as Galaxy Toolâ in the download section of the workflow.
-The tool can then be installed into Galaxy in the usual manner by the Galaxy
administrator.
-They will also need a <a href="/documentation/server/">Taverna Server</a> that
will run the
- Taverna Galaxy tools.</p>
-<p>Also check out the Taverna-Galaxy <a
href="https://trac.nbic.nl/elabfactory/wiki/eGalaxy";>wiki</a>.</p>
-<h3 id="for-taverna-galaxy-users">For Taverna-Galaxy users</h3>
-<ul>
-<li>You can now include Taverna workflows as part of your Galaxy workflows</li>
-<li>The Taverna workflow will be made available as a Galaxy tool</li>
-<li>You can <a href="http://www.myexperiment.org/workflows";>search/browse</a>
Taverna workflows from the
- <a href="http://www.myexperiment.org/";>myExperiment</a> workflow
repository, and</li>
-<li>Just let your Galaxy administrator know which Taverna workflows you want
installed in Galaxy</li>
-</ul>
-<h3 id="try-it-out">Try it out</h3>
-<ul>
-<li>The <a href="http://galaxy.nbic.nl";>NBIC Galaxy Server</a> provides a demo
platform to run some
- pre-installed Taverna workflows in Galaxy</li>
-</ul>
-<h3 id="taverna-galaxy-in-use">Taverna-Galaxy in use</h3>
-<p>Dr Casey Bergman and his group of Life Sciences researchers from the
- <a href="http://bergmanlab.smith.man.ac.uk";>Bergman Lab</a> @ University of
Manchester working on
- eukaryotic genome biology have successfully installed and used the
integrated Taverna-Galaxy
- tools.</p>
-<p>See <a href="http://bergmanlab.smith.man.ac.uk/?p=943";>their blog</a> about
their experiences in
- installing and running Taverna-Galaxy.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified:
websites/staging/taverna/trunk/content/documentation/taverna-player/index.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/taverna-player/index.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/taverna-player/index.html
Wed Mar 11 08:37:10 2015
@@ -104,180 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Taverna Player</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>The Taverna Player is a Web-based
interface (implemented as Ruby on Rails plugin) for executing
- existing workflows through the <a href="/documentation/server">Taverna
Server</a>.
-It can be considered analogous to playing videos on <a
href="http://www.youtube.com";>YouTube</a>.
-Workflows can be run with data supplied by the creator, or with new data
uploaded by the user,
- but the workflows themselves cannot be altered.</p>
-<p>Taverna Player enables the running of Taverna workflows within a
Ruby-on-Rails application.
-Taverna Player has a REST API that allows inputs to the workflow to be
specified,
- a run to be started and monitored, and the resultant outputs to be
retrieved.
-Any interactions the workflow includes are presented to the user in a Web
browser for them to
- complete.
-Taverna Player has been released in the RubyGems registry and is used within
the
- <a href="http://www.biovel.eu/";>BioVeL Portal</a> to run a wide range of
biodiversity workflows.</p>
-<p>Taverna Player is not limited to the biodiversity domain â it is generic
and can be used to run
- any Taverna workflow and can be integrated into various online environments
- for example it
- can be embedded into (static) HTML pages to run specific workflows with
pre-defined data.</p>
-<p>For more information on Taverna Player or to download it, please see the
following:</p>
-<ul>
-<li>Package (Ruby on Rails plugin): <a
href="https://rubygems.org/gems/taverna-player";>https://rubygems.org/gems/taverna-player</a></li>
-<li>Documentation: <a
href="http://mygrid.github.io/taverna-player/";>http://mygrid.github.io/taverna-player/</a></li>
-<li>Source: <a
href="https://github.com/myGrid/taverna-player";>https://github.com/myGrid/taverna-player</a></li>
-<li>Metrics: <a
href="https://codeclimate.com/github/myGrid/taverna-player";>https://codeclimate.com/github/myGrid/taverna-player</a></li>
-</ul>
-<h2 id="integration-of-taverna-player-into-web-apps">Integration of Taverna
Player into Web apps</h2>
-<h3 id="biovel-portal">BioVeL Portal</h3>
-<p><a href="http://www.biovel.eu/";>BioVeL</a> provides workflows for the
processing of data in major areas of
- biodiversity research: ecological niche modelling, ecosystem functioning,
and taxonomy.
-Taverna Player has been successfully used within the <a
href="https://portal.biovel.eu/";>BioVeL Portal</a>
- to submit and run a wide range of biodiversity workflows using the
- <a href="/documentation/server">Taverna Server</a>.</p>
-<h3 id="scratchpads">Scratchpads</h3>
-<p><a href="http://scratchpads.eu/";>Scratchpads</a>, developed as part of the
<a href="http://vbrant.eu/";>ViBRANT</a>
- project, are online virtual research environments for biodiversity,
allowing anyone to
- share their data and create their own research networks.
-Sites are hosted at the Natural History Museum London, and offered freely to
any scientist.</p>
-<p>Taverna Player has been integrated with Scratchpads in two ways.
-Firstly, workflows can be embedded in a page in the same way as a video from
YouTube would be
- embedded; the workflow itself is running on the BioVeL Portal, but all data
entry and
- user-interaction is done in the embedded widget within the Scratchpads site.
-Secondly, the Scratchpads can use the Taverna Player REST API directly;
- this allows workflows to be run with a higher degree of control and results
to be ingested
- back into the Scratchpads for further analysis.
-In both cases, data can be automatically injected into the workflow run from
the host
- Scratchpads site.
-The actual execution of the workflow is done by the Taverna Server -
- the Player just interacts with the Server to submit a workflow for
execution,
- monitor its progress and fetch results.</p>
-<p>Read more about
- <a
href="http://dev.mygrid.org.uk/wiki/display/TavernaStrategy/Scratchpads";>Scratchpads
integration</a>
- and see relevant publications.</p>
-<h3 id="ipython-notebook">IPython Notebook</h3>
-<p><a href="http://ipython.org/";>IPython Notebook</a> is a browser-based
environment for interactive
- computing.
-Users can write, edit and replay Python scripts.
-IPython Notebook has support for interactive data visualization and report
presentation.
-A Notebook can be saved and shared.
-Notebooks can be replayed using the same or different data.
-The record of a Notebook ârunâ can be saved and displayed in a
- <a href="http://nbviewer.ipython.org/";>Notebook Viewer</a>.</p>
-<p>Taverna Player, through its API and and the use of HTML iframes, enables
the running of
- workflows within a portal like the BioVeL Portal to be included as part of
another Web site.
-It uses the REST API of the Taverna Player to allow workflow inputs to be
specified,
- a run started and monitored, and the resultant outputs retrieved - all
within the IPython
- Notebook.</p>
-<p>Read more about
- <a
href="http://dev.mygrid.org.uk/wiki/display/TavernaStrategy/IPython+Notebook";>IPython
Notebook integration</a>
- and see relevant publications.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified:
websites/staging/taverna/trunk/content/documentation/training-and-workshops/index.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/training-and-workshops/index.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/training-and-workshops/index.html
Wed Mar 11 08:37:10 2015
@@ -104,123 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Training and workshops</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>Education and training in the use of the
Taverna tools is provided in a number of different ways.
-There are dedicated workshops, <a href="/documentation/tutorials">online
tutorials</a>,
- <a
href="http://dev.mygrid.org.uk/wiki/display/about/Publications";>presentations
and publications</a>.</p>
-<p>Over fifty tutorials have been given on the use of Taverna, and not just by
us.
-For example, the French <a href="http://www.sigenae.org/";>Signen@e</a>
consortium have trained over 200
- people and produced tutorials in French.
-Over 800 people have been trained by the Taverna team.</p>
-<p>We are always keen to organise training and tutorials for users and
workshops for developers.
-Please <a href="/community">get in touch</a> if you want to arrange a training
or a workshop.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified:
websites/staging/taverna/trunk/content/documentation/tutorials/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/tutorials/index.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/tutorials/index.html
Wed Mar 11 08:37:10 2015
@@ -104,124 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Tutorials</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>An introductory Taverna 2
- <a
href="http://www.myexperiment.org/files/997/versions/1/download/SimplifiedTutorial.ppt";>tutorial</a>
- @ [MyExperiment]((http://www.myexperiment.org)
- on building simple workflows is available to show some of the features of
Taverna 2.</p>
-<p>A webinar
- â<a href="http://bitesizebio.com/webinars/the-taverna-project/";>The
Taverna Project â a workbench for bioinformatics design</a>â<br />
- @ <a href="http://bitesizebio.com/";>BitesizeBio</a> given by Paul Fisher on
March 8th 2011 is also
- available on-line.</p>
-<p>Also check out our <a href="/documentation/videos">video tutorials</a> and
- <a href="http://www.mygrid.org.uk/dev/wiki/display/taverna/Videos";>videos
from the old Wiki</a>.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified: websites/staging/taverna/trunk/content/documentation/videos/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/videos/index.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/videos/index.html Wed
Mar 11 08:37:10 2015
@@ -104,130 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="http://www.apache.org/";>Apache Software
Foundation</a></li>
- <li><a
href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
- <li><a
href="http://incubator.apache.org/projects/taverna.html";>Taverna Incubation
Status</a></li>
- </ul>
- </li>
- </ul>
- </div><!--/.nav-collapse -->
- </div><!--/.container-->
- </nav>
-
-
- <div id="page" class="container">
- <h1>Videos</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>Videos below showcase Taverna's
capabilities or how Taverna can be used in a specific domain:</p>
-<ul>
-<li><a href="http://www.youtube.com/watch?v=Zh0tn8amjAY";>Taverna 2 in action
video</a></li>
-<li><a href="http://www.youtube.com/watch?v=ZjsO6NQfIRI";>Quick Taverna
2.1-myExperiment video tutorial</a>
- (shows downloading a workflow from <a
href="http://www.myexperiment.org/";>myExperiment</a>
- using the Workbench, modifying it and running)</li>
-<li><a href="http://www.youtube.com/watch?v=m3XTY8rnceQ";>Building data mining
workflows video tutorial</a>
- (using the <a href="/introduction/related-projects#e-lico">e-LICO</a>
project tools)</li>
-<li><a href="http://www.youtube.com/watch?v=JtmqZfzyEKs";>e-LICO demo</a></li>
-<li><a href="http://www.youtube.com/watch?v=17WBk1fqX3c";>Shared Genomics demo
@ 2010 AMIA Summit on Translational Bioinformatics</a>
- (demonstrates searching for genomic features inside genes and their
categorisation using
- the Taverna Server)</li>
-</ul>
-<p>A set of
- <a href="http://www.mygrid.org.uk/dev/wiki/display/taverna/Videos";>videos
that accompany the User Manual</a>
- are also available to show how particular task can be done in
Taverna.</p></div>
-
- </div>
-
- <footer class="footer">
- <div class="container">
- <p id="copyright" class="text-muted">
- Copyright © 2014-2015 The Apache Software Foundation,
Licensed under the
- <a href="http://www.apache.org/licenses/LICENSE-2.0";>Apache
License, Version 2.0</a>.
- Apache and the Apache feather logo are trademarks of The Apache
Software Foundation.
- </p>
- </div>
- </footer>
-
-
-
- <script src="/lib/jquery/jquery-1.11.1.min.js"></script>
-<script src="/lib/bootstrap/js/bootstrap.min.js"></script>
-
-<script>
- jQuery(function($) {
- if($(window).width()>769){
- $('.navbar .dropdown').hover(function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(250).slideDown();
-
- }, function() {
- $(this).find('.dropdown-menu').first().stop(true,
true).delay(100).slideUp();
-
- });
-
- $('.navbar .dropdown > a').click(function(){
- location.href = this.href;
- });
-
- }
- });
-</script>
-
-
- </body>
-</html>
\ No newline at end of file
Modified:
websites/staging/taverna/trunk/content/documentation/web-service-developers/index.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/web-service-developers/index.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/web-service-developers/index.html
Wed Mar 11 08:37:10 2015
@@ -104,183 +104,3 @@
<li><a
href="/documentation/#tools">Tools and Services</a></li>
</ul>
</li>
- <li class="dropdown">
- <a href="/download"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Download<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a href="/download">Which Taverna
to use</a></li>
- <li><a
href="/download/workbench">TavernaWorkbench</a></li>
- <li><a
href="/download/language">Taverna's SCUFL2 Language</a></li>
- <li><a
href="/download/command-line-tool">Taverna Command Line</a></li>
- <li><a
href="/download/server">Taverna Server</a></li>
- <li><a
href="/documentation/plugins">Plugins</a></li>
- <li><a href="/download/code">Source
Code</a></li>
- <li><a href="/download/maven">Maven
Repository</a></li>
- <li><a
href="/download/system-requirements">System Requirements</a></li>
- <li><a
href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
- </ul>
- </li>
- <li class="dropdown">
- <a href="/community"
class="dropdown-toggle" data-toggle="dropdown" role="button"
aria-expanded="false">Community<span class="caret"></span></a>
- <ul class="dropdown-menu" role="menu">
- <li><a
href="/community/lists">Mailing Lists</a></li>
- <li><a href="/community/irc">IRC
chat</a></li>
- <li><a
href="/community#contribute">Contribute</a></li>
- <li><a
href="/community#reportbugs">Report a Bug</a></li>
- <li><a href="/community/edit">Edit
website</a></li>
- </ul>
- </li>
- </ul>
-
- <form >
-
-
- <!--<input type="submit" id="submit" value="Search">-->
- </form>
-
- <form class="navbar-form navbar-right" role="search"
- name="search" id="search"
action="http://www.google.com/search"; method="get">
- <input value="taverna.incubator.apache.org"
name="sitesearch" type="hidden"/>
- <div class="form-group input-group">
- <input type="text" name="q" id="query"
placeholder="Search" class="form-control">
- <span class="input-group-btn">
- <button type="submit" class="btn
btn-default">Search</button>
- </span>
- </div>
- </form>
-
- <ul class="nav navbar-nav navbar-right">
- <li class="dropdown">
- <a href="http://www.apache.org/"; class="dropdown-toggle"
data-toggle="dropdown" role="button" aria-expanded="false">ASF<span
class="caret"></span></a>
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Foundation</a></li>
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href="http://www.apache.org/foundation/how-it-works.html";>How it works</a></li>
- <li><a
href="http://www.apache.org/foundation/thanks.html";>Thanks</a></li>
- <li><a
href="http://www.apache.org/foundation/sponsorship.html";>Become a
Sponsor</a></li>
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- <h1>Web service developers</h1>
- <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
-
-Taverna is transitioning to the Apache Incubator.
-This webpage reflects material not yet released under Apache Incubator.
-Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
-</div>
-
-
- <div id="content"><p>Taverna aims to support Web services that
are
- <a
href="http://www.ws-i.org/Profiles/BasicProfile-1.1-2004-08-24.html";>WS-I</a>
(Web Services Interoparability) compliant,
- but this is a long-term goal and currently there are a few nuances.
-However, it should be possible to create Web services that are compatible with
Taverna if you follow certain guidelines.</p>
-<h2 id="wsdl-web-service-description-language-style-web-services">WSDL (Web
Service Description Language) style Web services</h2>
-<p><a href="/documentation/glossary#wsdl">WSDL</a> binding describes how the
Web service is bound to a messaging protocol;
- particularly the SOAP messaging protocol.
-A WSDL SOAP binding can be either a <strong>Remote Procedure Call
(RPC)</strong> style binding or a <strong>document</strong> style binding.
-A SOAP binding can also have an <strong>encoded</strong> use or a
<strong>literal</strong> use.
-This gives you four style/use models:</p>
-<ol>
-<li>RPC/encoded</li>
-<li>RPC/literal</li>
-<li>Document/encoded</li>
-<li>Document/literal</li>
-</ol>
-<p>There is also a fifth binding style that is commonly referred to as the
document/literal wrapped.
-Thus, developers have five binding styles to choose from when creating a WSDL
file.</p>
-<p>A good description of the differences between these styles can be found
- <a
href="http://www-128.ibm.com/developerworks/webservices/library/ws-whichwsdl/";>here</a>.</p>
-<p>Although Taverna supports bindings that are <strong>RPC/encoded</strong>
and <strong>RPC/literal</strong> to a fair extent,
- the preferred binding style is <strong>document/literal wrapped</strong>,
- i.e. the WSDL should have âstyleâ attributes that are set to
âdocumentâ and âuseâ attributes set to âliteralâ.
-This is particularly the case when dealing with complex types; for primitive
types no problems are anticipated.</p>
-<h3 id="currently-un-tested">Currently un-tested</h3>
-<p>The following are untested, and although not proven to fail the behaviour
is currently undefined.
-For this reason it is advised that these features are avoided.</p>
-<ul>
-<li>Multiple WSDL imports.
- Taverna has only been tested on services that contain either no, or only
one import of an additional wsdl file.
- For WSDLs that import more than one additional WSDL, particularly if that
WSDL has a different service endpoint to the others,
- the behaviour of Taverna is currently unclear.
- Its expected that it will fail when invoking the Web service.
- This does not affect imports of schemas.
- This has been thoroughly tested and works as expected.</li>
-<li>Multiple service endpoints. For a given WSDL Taverna currently only
references the first service endpoint.
- If more than one exists then operations belonging to the second endpoint
are expected to fail.</li>
-<li>Ambiguous type names.
- In the unusual case that an operation requires inputs that contain
identically named types
- that belong to different namespaces it is expected that Taverna should
not have any problems.
- However, because of the unusual nature of this it is untested and therefore
not recommended.</li>
-</ul>
-<h3 id="currently-known-to-fail">Currently known to fail</h3>
-<p>The following are situations that are known to fail in Taverna.</p>
-<ul>
-<li>Cyclic references.
- When processing the result of invoking an operation, Taverna resolves the
XML into a single document.
- If the response contains cyclic references, this is detected and an error
occurs (to prevent an infinitely long document!).
- For this reason cyclic references should be avoided.
- (Taverna will, however,
- work with such an operation as long as the cyclic reference is not
contained within the response data structure).</li>
-<li>Overloaded operations. Within the UI,
- Taverna only distinguishes between operations, for a given service, by
name.
- The operation signature is not used to distinguish between operations of
the same name.
- For this simple reason, Taverna does not support overloaded operations.</li>
-<li>anyType.
- Although Taverna can invoke a service that deals with the anyType type,
- the XML splitting mechanism cannot work since there is no information
about the data structure required or received.
- Such services can only be used by providing and/or manipulating the XML
directly.</li>
-</ul>
-<h2 id="advertise-your-services-with-biocatalogue">Advertise your services
with BioCatalogue</h2>
-<p>If your services are in the Life Sciences domain,
- one of the best ways to make people aware of your services and make them
easily discoverable from Taverna and
- the Web is to register and describe them in <a
href="http://www.biocatalogue.org/";>BioCatalogue</a>
- Life Sciences Web Services registry.</p></p>
-<p>With BioCatalogue, service providers can easily register, describe,
advertise and monitor their Web services.
- Users can easily find the right Web service using BioCatalogue's powerful
search and filtering.
-BioCatalogue provides combined information about services from both providers
and community
- as it has on-going expert curation as well as social curation by the
community.</p></div>
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