Author: buildbot
Date: Thu Mar 12 11:53:25 2015
New Revision: 943502
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/documentation/scufl2/api.html
websites/staging/taverna/trunk/content/documentation/scufl2/bundle.html
websites/staging/taverna/trunk/content/documentation/scufl2/datalink.html
websites/staging/taverna/trunk/content/documentation/scufl2/index.html
websites/staging/taverna/trunk/content/documentation/scufl2/language.html
websites/staging/taverna/trunk/content/documentation/scufl2/ontology.html
websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
websites/staging/taverna/trunk/content/documentation/scufl2/profile.html
websites/staging/taverna/trunk/content/documentation/scufl2/taverna_bundle.html
websites/staging/taverna/trunk/content/documentation/scufl2/uris.html
websites/staging/taverna/trunk/content/documentation/scufl2/workflow.html
websites/staging/taverna/trunk/content/download/scufl2/index.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Thu Mar 12 11:53:25 2015
@@ -1 +1 @@
-1666149
+1666151
Propchange: websites/staging/taverna/trunk/content/
------------------------------------------------------------------------------
--- cms:source-revision (original)
+++ cms:source-revision Thu Mar 12 11:53:25 2015
@@ -1 +1 @@
-1666149
+1666151
Modified: websites/staging/taverna/trunk/content/documentation/scufl2/api.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/api.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/api.html Thu
Mar 12 11:53:25 2015
@@ -184,15 +184,16 @@
<div id="page" class="container">
<h1>SCUFL2 API</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>Currently the most up to date
information can be found in the github
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>Currently the most up to date
information can be found in the github
<a
href="https://github.com/apache/incubator-taverna-language";>readme</a></p>
<h3 id="previous-versions">Previous Versions</h3>
<p>For information on previous None Apache versions see the
<a href="http://dev.mygrid.org.uk/wiki/display/developer/SCUFL2+API";>Mygrid
pages</a></p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -207,8 +208,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/bundle.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/bundle.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/bundle.html Thu
Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Scufl2-WorkflowBundle</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The entry point of the Taverna Workflow
Bundle.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The entry point of the Taverna
Workflow Bundle.</p>
<p>Defines the <em>workflows</em> and <em>profiles</em> of a
<a href="/documentation/scufl2/taverna_bundle">Taverna Workflow Bundle</a>.
The <em>main workflow</em> is also normally defined, which would be the
top-level workflow to execute.
@@ -460,9 +461,9 @@ Each of the workflows and profiles must
<strong>May</strong> parse the <code>/workflowBundle.rdf</code> as RDF/XML <br
/>
<strong>May</strong> parse the {/workflowBundle.rdf}} according to the XML
schema if the <code>xsi:type="WorkflowBundleDocument"</code>
is set on the <code>rdf:RDF</code> element.</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -477,8 +478,8 @@ Each of the workflows and profiles must
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/datalink.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/datalink.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/datalink.html
Thu Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Scufl2-DataLink</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The definition of a data link.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The definition of a data
link.</p>
<div class="codehilite"><pre><span class="n">Bundle</span> <span
class="n">path</span><span class="p">:</span> <span class="o">/</span><span
class="n">workflow</span><span class="o">/\</span>$<span
class="n">workflowName</span><span class="p">.</span><span class="n">n3</span>
</pre></div>
@@ -297,9 +298,9 @@ itself. Additional metadata should be ad
Must be set where more than one datalinks <em>sendsTo</em> the same
ReceivingPort.
The positions for a port must be sequentially assigned from 0 without
gaps.</li>
</ul></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -314,8 +315,8 @@ itself. Additional metadata should be ad
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified: websites/staging/taverna/trunk/content/documentation/scufl2/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/index.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/index.html Thu
Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>SCUFL2 Taverna Language</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>SCUFL2 is the new (since Taverna 3)
mechanism for specifying Taverna workflows.
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>SCUFL2 is the new (since
Taverna 3) mechanism for specifying Taverna workflows.
SCUFL2 defines a model, a workflow bundle file format (.wfbundle), and a Java
API for working with workflow structures.
SCUFL2 is the workflow language for Taverna 3, and replaces Taverna 2's t2flow
format.</p>
<h2 id="summary">Summary</h2>
@@ -224,9 +225,9 @@ However, this format also has its caveat
<li>SCUFL2 <a href="/documentation/scufl2/bundle">Workflow Bundle</a>
format</li>
<li><a href="/documentation/scufl2/api">SCUFL2 API</a> for Java</li>
</ul></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -241,8 +242,8 @@ However, this format also has its caveat
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/language.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/language.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/language.html
Thu Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>SCUFL2 language</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The SCUFL2 language is the abstract set
of constructs that define a Taverna workflow.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The SCUFL2 language is the
abstract set of constructs that define a Taverna workflow.</p>
<p>This has been formalized in an <a href="/documentation/scufl2/ontology">OWL
ontology</a>,
which is used by the <code>scufl2-rdfxml</code> module of the <a
href="/documentation/scufl2/api">SCUFL2 API</a>
to serialise the <a href="/documentation/scufl2/taverna_bundle">Taverna
workflow bundle</a>.</p>
@@ -194,9 +195,9 @@
<a href="/documentation/scufl2/profile">profiles</a>.</p>
<p>You can browse a serialisation of using the SCUFL2 ontology within a
Taverna workflow bundle in this
example (Links to follow):</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -211,8 +212,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/ontology.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/ontology.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/ontology.html
Thu Mar 12 11:53:25 2015
@@ -184,11 +184,12 @@
<div id="page" class="container">
<h1>Scufl2 Ontology </h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>Details of the Scufl2 Ontology will be
available here later.</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>Details of the Scufl2 Ontology
will be available here later.</p></div>
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -203,8 +204,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
Thu Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Scufl2-Processors</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The definition of a processor.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The definition of a
processor.</p>
<ul>
<li>Bundle path: <code>/workflow/\$workflowName.n3</code></li>
</ul>
@@ -242,9 +243,9 @@ Additional metadata should be added to a
Their URIs <strong>must</strong> be relative to this processor, their type and
<strong>scufl2:name</strong>.
So for instance <processor/Hello/out/greeting> is a
<strong>scufl2:OutputProcessorPort</strong> in <processor/Hello>,
and has a <strong>scufl2:name</strong> "greeting".</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -259,8 +260,8 @@ So for instance <processor/Hello/out/
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/profile.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/profile.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/profile.html
Thu Mar 12 11:53:25 2015
@@ -184,11 +184,12 @@
<div id="page" class="container">
<h1>Scufl2 Profile</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>Details of the Scufl2 profile still to
be added.</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>Details of the Scufl2 profile
still to be added.</p></div>
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -203,8 +204,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/taverna_bundle.html
==============================================================================
---
websites/staging/taverna/trunk/content/documentation/scufl2/taverna_bundle.html
(original)
+++
websites/staging/taverna/trunk/content/documentation/scufl2/taverna_bundle.html
Thu Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Taverna Workflow Bundle</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The primary <a
href="/documentation/scufl2">SCUFL2</a> file format is the Taverna <em>workflow
bundle</em>.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The primary <a
href="/documentation/scufl2">SCUFL2</a> file format is the Taverna <em>workflow
bundle</em>.</p>
<table><tbody>
<tr>
<th>Media type</th>
@@ -506,9 +507,9 @@ One can for instance imagine an UCF arch
(see: <a href="http://labs.adobe.com/technologies/mars/";>Mars project</a>)
and should be opened in Adobe Acrobat Reader.
However, it can also contain <code>workflowBundle.rdf</code>,
<code>workflow/importantResearch.rdf</code>,
and could therefore also be opened using SCUFL2 tools. </p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -523,8 +524,8 @@ However, it can also contain <code>workf
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified: websites/staging/taverna/trunk/content/documentation/scufl2/uris.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/uris.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/uris.html Thu
Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Scufl2 URIs</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><ul>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><ul>
<li><a href="#Scufl2URIs-URItreeofexampleworkflowbundle">URI tree of example
workflow bundle</a></li>
<li><a href="#Scufl2URIs-CompleteURItreeforexampleworkflowbundle">Complete URI
tree for example workflow bundle</a></li>
</ul>
@@ -332,9 +333,9 @@
<span class="n">http</span><span class="p">:</span><span
class="o">//</span><span class="n">ns</span><span class="p">.</span><span
class="n">taverna</span><span class="p">.</span><span class="n">org</span><span
class="p">.</span><span class="n">uk</span><span class="o">/</span>2010<span
class="o">/</span><span class="n">workflowBundle</span><span
class="o">/</span>28<span class="n">f7c554</span><span class="o">-</span>4<span
class="n">f35</span><span class="o">-</span>401<span class="n">f</span><span
class="o">-</span><span class="n">b34b</span><span class="o">-</span>516<span
class="n">e9a0ef731</span><span class="o">/</span><span
class="n">profile</span><span class="o">/</span><span
class="n">tavernaServer</span><span class="o">/</span><span
class="n">configuration</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span>
<span class="p">]]</span><span class="o">></span>
</pre></div></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -349,8 +350,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified:
websites/staging/taverna/trunk/content/documentation/scufl2/workflow.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/workflow.html
(original)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/workflow.html
Thu Mar 12 11:53:25 2015
@@ -184,8 +184,9 @@
<div id="page" class="container">
<h1>Scufl2-Workflow</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The definition of a workflow, its
processors, inputs/outputs and links.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The definition of a workflow,
its processors, inputs/outputs and links.</p>
<ul>
<li>Bundle path: <code>/workflow/\$name.n3</code></li>
</ul>
@@ -248,9 +249,9 @@ Additional metadata should be added to a
Their URIs <strong>must</strong> be relative to this workflow, their type and
<strong>scufl2:name</strong>.
So for instance <workflow/Helloworld/processor/Hello> is a
<strong>scufl2:Processor</strong> in <workflow/Helloworld>,
and has a <strong>scufl2:name</strong> "Hello".</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -265,8 +266,8 @@ So for instance <workflow/Helloworld/
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
Modified: websites/staging/taverna/trunk/content/download/scufl2/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/download/scufl2/index.html (original)
+++ websites/staging/taverna/trunk/content/download/scufl2/index.html Thu Mar
12 11:53:25 2015
@@ -184,12 +184,13 @@
<div id="page" class="container">
<h1>Taverna Language</h1>
- <div class="col-sd-9 col-md-10">
- <div id="content"><p>The Taverna Language SCUFL2 will be the
first Taverna product released under Apache.</p>
+ <div class="row">
+ <div class="col-sd-9 col-md-10">
+ <div id="content"><p>The Taverna Language SCUFL2
will be the first Taverna product released under Apache.</p>
<p>Download detail will here here shortly.</p></div>
- </div>
- <div class="col-sd-3 col-md2">
- <ul class="nav nav-pills nav-stacked">
+ </div>
+ <div class="col-sd-3 col-md2">
+ <ul class="nav nav-pills nav-stacked">
<li><a href="/documentation/scufl2">Scufl2 home</a></li>
<li><a href="/documentation/scufl2/bundle">Workflow Bundle</a></li>
<li><a href="/documentation/scufl2/workflow">Workflow</a></li>
@@ -204,8 +205,8 @@
<li><a href="/download/scufl2">Download</a></li>
</ul>
+ </div>
</div>
-
</div>
<footer class="footer">
