http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker index e46e219..e7c6dfc 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.biojava.TranscribeWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>import org.biojava.bio.seq.DNATools; import org.biojava.bio.seq.RNATools; import org.biojava.bio.symbol.SymbolList; @@ -24,7 +24,7 @@ rna_seq = symL.seqString(); <element class="string">uk.org.mygrid.resources:biojava:1.4pre1</element> </dependencies> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -33,16 +33,16 @@ rna_seq = symL.seqString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>rna_seq</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker index 9ed72e4..b1e35cd 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>BufferedReader getReader (String fileUrl) throws IOException { InputStreamReader reader; try { @@ -57,7 +57,7 @@ if (displayResults) { </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -66,8 +66,8 @@ if (displayResults) { <mimeTypes> <string>l('text/plain')</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -76,8 +76,8 @@ if (displayResults) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -86,16 +86,16 @@ if (displayResults) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>results</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker index 410ceb0..19aa4d9 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.EnvVariableWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="properties" to="properties" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="properties" to="properties" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>import java.net.URLEncoder; Properties sysProps = System.getProperties(); @@ -21,13 +21,13 @@ properties = sb.toString(); <dependencies /> <inputs /> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>properties</name> <depth>0</depth> <mimeTypes> <string>'text/xml'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask index 910d0d6..d5fd02b 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByExtTask @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>class FileExtFilter implements FileFilter { public FileExtFilter(String ext) { @@ -39,7 +39,7 @@ for (int i = 0; i < fileObjList.length; i++) { </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -48,8 +48,8 @@ for (int i = 0; i < fileObjList.length; i++) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -58,16 +58,16 @@ for (int i = 0; i < fileObjList.length; i++) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>1</granularDepth> <name>filelist</name> <depth>1</depth> <mimeTypes> <string>l('text/plain')</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask index 06906b6..4e57939 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.FileListByRegexTask @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>class FileRegexFilter implements FileFilter { public FileRegexFilter(String regex) { @@ -37,7 +37,7 @@ for (int i = 0; i < fileObjList.length; i++) { </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -46,8 +46,8 @@ for (int i = 0; i < fileObjList.length; i++) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -56,16 +56,16 @@ for (int i = 0; i < fileObjList.length; i++) { <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>1</granularDepth> <name>filelist</name> <depth>1</depth> <mimeTypes> <string>l('text/plain')</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand index c0adc09..7d242b2 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.LocalCommand @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if (command == void || command.equals("")) { throw new RuntimeException("The 'command' port cannot be null."); } @@ -46,7 +46,7 @@ result = sb.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -55,8 +55,8 @@ result = sb.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -65,16 +65,16 @@ result = sb.toString(); <mimeTypes> <string>l('text/plain')</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>result</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader index 6e9adb4..bd0f5e9 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileReader @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>BufferedReader getReader (String fileUrl, String encoding) throws IOException { InputStreamReader reader; try { @@ -42,7 +42,7 @@ filecontents = sb.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -51,8 +51,8 @@ filecontents = sb.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -61,16 +61,16 @@ filecontents = sb.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>filecontents</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter index 88ac962..4c6bb96 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.io.TextFileWriter @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script> BufferedWriter out; if (encoding == void) { @@ -14,7 +14,7 @@ outputFile = filecontents; </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -23,8 +23,8 @@ outputFile = filecontents; <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -33,8 +33,8 @@ outputFile = filecontents; <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -43,15 +43,15 @@ outputFile = filecontents; <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputFile</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker index b6263cf..90b9f1e 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="password" to="password" /><map from="userid" to="userid" /><map from="params" to="params" /><map from="url" to="url" /><map from="provideXml" to="provideXml" /><map from="driver" to="driver" /><map from="sql" to="sql" /></inputMap><outputMap><map from="resultList" to="resultList" /><map from="xmlresults" to="xmlresults" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap><map from="password" to="password" /><map from="userid" to="userid" /><map from="params" to="params" /><map from="url" to="url" /><map from="provideXml" to="provideXml" /><map from="driver" to="driver" /><map from="sql" to="sql" /></inputMap><outputMap><map from="resultList" to="resultList" /><map from="xmlresults" to="xmlresults" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script> import java.sql.Driver; @@ -128,7 +128,7 @@ finally { <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -146,9 +146,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -166,9 +166,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -186,9 +186,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -206,9 +206,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -226,9 +226,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -246,9 +246,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -266,13 +266,13 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>2</granularDepth> @@ -286,9 +286,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> @@ -302,8 +302,8 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker index fa0748c..3743ac7 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.jdbc.SQLUpdateWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap><map from="password" to="password" /><map from="userid" to="userid" /><map from="params" to="params" /><map from="url" to="url" /><map from="provideXml" to="provideXml" /><map from="driver" to="driver" /><map from="sql" to="sql" /></inputMap><outputMap><map from="resultList" to="resultList" /><map from="xmlresults" to="xmlresults" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap><map from="password" to="password" /><map from="userid" to="userid" /><map from="params" to="params" /><map from="url" to="url" /><map from="provideXml" to="provideXml" /><map from="driver" to="driver" /><map from="sql" to="sql" /></inputMap><outputMap><map from="resultList" to="resultList" /><map from="xmlresults" to="xmlresults" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>import java.sql.Driver; import java.sql.DriverManager; @@ -82,7 +82,7 @@ finally { <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -100,9 +100,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -120,9 +120,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -140,9 +140,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -160,11 +160,11 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -182,9 +182,9 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> @@ -202,13 +202,13 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> @@ -222,8 +222,8 @@ finally { </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker index 8b7a680..dc748b0 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideFastaWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker index 80f791a..da37aaa 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideGBSeqWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker index 2ce601b..282b23d 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideINSDSeqXMLWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker index aad694a..7f466c4 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.NucleotideTinySeqXMLWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker index c07b04e..208ffcb 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker index bf85c2b..94559e8 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinGBSeqWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker index c82209f..5c5e006 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinINSDSeqXMLWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker index b6f9337..9c50643 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.ProteinTinySeqXMLWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -21,7 +21,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -30,16 +30,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker index 71fef3c..f04b568 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedEFetchWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((id == void) || (id == null) || id.equals("")) { throw new RunTimeException("port id must have a non-empty value"); } @@ -24,7 +24,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -33,8 +33,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -43,8 +43,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -53,16 +53,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker index 37c440c..6b4f061 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.ncbi.PubMedESearchWorker @@ -1,4 +1,4 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap><map from="outputText" to="outputText" /></outputMap><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <script>if ((term == void) || (term == null) || term.equals("")) { throw new RunTimeException("port term must have a non-empty value"); } @@ -30,7 +30,7 @@ outputText = writer.toString(); </script> <dependencies /> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -39,8 +39,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -49,8 +49,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -59,8 +59,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -69,8 +69,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -79,8 +79,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -89,8 +89,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -99,8 +99,8 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> @@ -109,16 +109,16 @@ outputText = writer.toString(); <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <granularDepth>0</granularDepth> <name>outputText</name> <depth>0</depth> <mimeTypes> <string>'text/plain'</string> </mimeTypes> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl index a2317c5..2ff8903 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.BrowseUrl @@ -1,6 +1,6 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>url</name> <depth>0</depth> <mimeTypes> @@ -9,7 +9,7 @@ <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs /> <classLoaderSharing>workflow</classLoaderSharing> @@ -28,4 +28,4 @@ uri = new URI(url); Desktop.getDesktop().browse(uri);</script> <dependencies /> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/163747de/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader ---------------------------------------------------------------------- diff --git a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader index d3149d6..36bb7de 100644 --- a/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader +++ b/taverna-localworker-activity-ui/src/main/resources/net.sourceforge.taverna.scuflworkers.net.ExtractHeader @@ -1,6 +1,6 @@ -<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> +<activity xmlns="http://taverna.sf.net/2008/xml/t2flow";><class>org.apache.taverna.activities.localworker.LocalworkerActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean xmlns=""> <inputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>headers</name> <depth>1</depth> <mimeTypes> @@ -9,8 +9,8 @@ <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>header_key</name> <depth>0</depth> <mimeTypes> @@ -19,15 +19,15 @@ <handledReferenceSchemes /> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> - <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + <org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>header_value</name> <depth>0</depth> <mimeTypes /> <granularDepth>0</granularDepth> - </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> + </org.apache.taverna.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> @@ -52,4 +52,4 @@ for (String h : headers) { } }</script> <dependencies /> -</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file +</org.apache.taverna.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity> \ No newline at end of file
