http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/b29c0312/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl ---------------------------------------------------------------------- diff --git a/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl b/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl deleted file mode 100644 index bd1ce36..0000000 --- a/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl +++ /dev/null @@ -1,360 +0,0 @@ -<?xml version ='1.0' encoding ='UTF-8' ?> -<definitions name='prodoric_ws' - targetNamespace='ws.prodoric' - xmlns:tns='ws.prodoric' - xmlns:soap='http://schemas.xmlsoap.org/wsdl/soap/' - xmlns:xsd='http://www.w3.org/2001/XMLSchema' - xmlns:soapenc='http://schemas.xmlsoap.org/soap/encoding/' - xmlns:wsdl='http://schemas.xmlsoap.org/wsdl/' - xmlns='http://schemas.xmlsoap.org/wsdl/'> - -<wsdl:types> -<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"; xmlns:apachesoap="http://xml.apache.org/xml-soap"; -xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/"; -targetNamespace="ws.prodoric"> - -<xsd:element name="ProteinAccString" type="xsd:string"/> -<xsd:element name="HelloStringIn" type="xsd:string"/> -<xsd:element name="HelloStringOut" type="xsd:string"/> -<xsd:element name="ProfileAcc" type="xsd:string"/> - -<xsd:element name="OperonParams" type="tns:ParamsType"/> -<xsd:element name="RegulatorParams" type="tns:ParamsType"/> -<xsd:element name="ProfileParameterParams" type="tns:ParamsType"/> -<xsd:element name="ExpressionFromGeneParams" type="tns:ParamsType"/> -<xsd:element name="GenomeParams" type="tns:ParamsType"/> - <xsd:complexType name="ParamsType"> - - <xsd:sequence> - <xsd:element name="idtype" type="xsd:string"/> - <xsd:element name="id" type="xsd:string"/> - </xsd:sequence> - </xsd:complexType> - -<xsd:element name="UniprotAccArray" type="tns:StringArrayType"/> -<xsd:complexType name="StringArrayType"> - <xsd:sequence> - <xsd:element name="str" type="xsd:string" minOccurs="0" maxOccurs="unbounded"/> - - </xsd:sequence> -</xsd:complexType> - -<xsd:element name="ArrayOfOperonResult" type="tns:OperonResultArrayType"/> -<xsd:complexType name="OperonResultArrayType"> - <xsd:sequence> - <xsd:element name="OperonResult" type="tns:OperonResultType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="OperonResultType"> - <xsd:sequence> - <xsd:element name="gene_acc" type="xsd:string"/> - - <xsd:element name="short_name" type="xsd:string"/> - <xsd:element name="gene_name" type="xsd:string"/> - <xsd:element name="orf_id" type="xsd:string"/> - <xsd:element name="operon_acc" type="xsd:string"/> - <xsd:element name="operon_name" type="xsd:string"/> - <xsd:element name="references" type="xsd:string"/> - </xsd:sequence> -</xsd:complexType> - -<xsd:element name="ArrayOfRegulatorResult" type="tns:RegulatorResultArrayType"/> - -<xsd:complexType name="RegulatorResultArrayType"> - <xsd:sequence> - <xsd:element name="RegulatorResult" type="tns:RegulatorResultType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="RegulatorResultType"> - <xsd:sequence> - <xsd:element name="protein_acc" type="xsd:string"/> - <xsd:element name="short_name" type="xsd:string"/> - <xsd:element name="protein_name" type="xsd:string"/> - - <xsd:element name="orf_id" type="xsd:string"/> - <xsd:element name="mode_of_action" type="xsd:string"/> - <xsd:element name="promoter_acc" type="xsd:string"/> - <xsd:element name="promoter_name" type="xsd:string"/> - <xsd:element name="site_acc" type="xsd:string"/> - <xsd:element name="site_name" type="xsd:string"/> - <xsd:element name="sequence" type="xsd:string"/> - <xsd:element name="references" type="xsd:string"/> - </xsd:sequence> - -</xsd:complexType> - -<xsd:element name="ArrayOfProfileParameterResult" type="tns:ProfileParameterResultArrayType"/> -<xsd:complexType name="ProfileParameterResultArrayType"> - <xsd:sequence> - <xsd:element name="ProfileParameterResult" type="tns:ProfileParameterResultType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="ProfileParameterResultType"> - <xsd:sequence> - <xsd:element name="profile_acc" type="xsd:string"/> - <xsd:element name="description" type="xsd:string"/> - - <xsd:element name="condition" type="xsd:string"/> - <xsd:element name="details" type="xsd:string"/> - <xsd:element name="genome_acc" type="xsd:string"/> - <xsd:element name="genome" type="xsd:string"/> - <xsd:element name="references" type="xsd:string"/> - </xsd:sequence> -</xsd:complexType> - -<xsd:element name="ArrayOfProfileResult" type="tns:ProfileResultArrayType"/> -<xsd:complexType name="ProfileResultArrayType"> - <xsd:sequence> - - <xsd:element name="ProfileResult" type="tns:ProfileResultType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="ProfileResultType"> - <xsd:sequence> - <xsd:element name="gene_acc" type="xsd:string"/> - <xsd:element name="orf_id" type="xsd:string"/> - <xsd:element name="short_name" type="xsd:string"/> - <xsd:element name="gene_name" type="xsd:string"/> - <xsd:element name="regulation" type="xsd:string"/> - - <xsd:element name="fold_change" type="xsd:string"/> - </xsd:sequence> -</xsd:complexType> - -<xsd:element name="ArrayOfExpressionFromGene" type="tns:ExpressionFromGeneArrayType"/> -<xsd:complexType name="ExpressionFromGeneArrayType"> - <xsd:sequence> - <xsd:element name="ExpressionFromGene" type="tns:ExpressionFromGeneType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="ExpressionFromGeneType"> - <xsd:sequence> - - <xsd:element name="profile_acc" type="xsd:string"/> - <xsd:element name="description" type="xsd:string"/> - <xsd:element name="condition" type="xsd:string"/> - <xsd:element name="regulation" type="xsd:string"/> - <xsd:element name="fold_change" type="xsd:string"/> - <xsd:element name="references" type="xsd:string"/> - </xsd:sequence> -</xsd:complexType> - -<xsd:element name="ArrayOfGenomeResult" type="tns:GenomeResultArrayType"/> - -<xsd:complexType name="GenomeResultArrayType"> - <xsd:sequence> - <xsd:element name="GenomeResult" type="tns:GenomeResultType" minOccurs="0" maxOccurs="unbounded"/> - </xsd:sequence> -</xsd:complexType> -<xsd:complexType name="GenomeResultType"> - <xsd:sequence> - <xsd:element name="genome_acc" type="xsd:string"/> - <xsd:element name="genome_name" type="xsd:string"/> - </xsd:sequence> - -</xsd:complexType> - -</xsd:schema> - -</wsdl:types> - -<message name='getOperonRequest'> - <part name='params' element='tns:OperonParams'/> -</message> -<message name='getOperonResponse'> - <part name='return' element='tns:ArrayOfOperonResult'/> -</message> - -<message name='getRegulatorsFromGeneRequest'> - <part name='params' element='tns:RegulatorParams'/> -</message> - -<message name='getRegulatorsFromGeneResponse'> - <part name='return' element='tns:ArrayOfRegulatorResult'/> -</message> - -<message name='getProfileParameterRequest'> - <part name='params' element='tns:ProfileParameterParams'/> -</message> -<message name='getProfileParameterResponse'> - <part name='return' element='tns:ArrayOfProfileParameterResult'/> -</message> - -<message name='getProfileRequest'> - <part name='params' element='tns:ProfileAcc'/> -</message> -<message name='getProfileResponse'> - <part name='return' element='tns:ArrayOfProfileResult'/> - -</message> - -<message name='getExpressionFromGeneRequest'> - <part name='params' element='tns:ExpressionFromGeneParams'/> -</message> -<message name='getExpressionFromGeneResponse'> - <part name='return' element='tns:ArrayOfExpressionFromGene'/> -</message> - -<message name='getGenomeRequest'> - <part name='params' element='tns:GenomeParams'/> -</message> -<message name='getGenomeResponse'> - <part name='return' element='tns:ArrayOfGenomeResult'/> - -</message> - -<message name='getUniProtAccRequest'> - <part name='protein_acc' element='tns:ProteinAccString'/> -</message> -<message name='getUniProtAccResponse'> - <part name='uniprot_acc' element='tns:UniprotAccArray'/> -</message> - -<message name='helloRequest'> - <part name='input' element='tns:HelloStringIn'/> -</message> -<message name='helloResponse'> - <part name='return' element='tns:HelloStringOut'/> -</message> - - -<portType name='prodoricPortType'> - - <operation name='getOperon'> - <input message='tns:getOperonRequest'/> - <output message='tns:getOperonResponse'/> - </operation> - - <operation name='getRegulatorsFromGene'> - <input message='tns:getRegulatorsFromGeneRequest'/> - <output message='tns:getRegulatorsFromGeneResponse'/> - </operation> - - <operation name='getProfileParameter'> - <input message='tns:getProfileParameterRequest'/> - <output message='tns:getProfileParameterResponse'/> - </operation> - - <operation name='getProfile'> - <input message='tns:getProfileRequest'/> - <output message='tns:getProfileResponse'/> - </operation> - - <operation name='getExpressionFromGene'> - <input message='tns:getExpressionFromGeneRequest'/> - <output message='tns:getExpressionFromGeneResponse'/> - </operation> - - <operation name='getGenome'> - <input message='tns:getGenomeRequest'/> - <output message='tns:getGenomeResponse'/> - </operation> - - <operation name='getUniProtAcc'> - <input message='tns:getUniProtAccRequest'/> - <output message='tns:getUniProtAccResponse'/> - </operation> - - <operation name='hello'> - <input message='tns:helloRequest'/> - <output message='tns:helloResponse'/> - </operation> - -</portType> - - -<binding name='prodoricBinding' type='tns:prodoricPortType'> - <soap:binding style='document' transport='http://schemas.xmlsoap.org/soap/http'/> - - <operation name='getOperon'> - <soap:operation soapAction='ws.prodoric#getOperon'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - <operation name='getRegulatorsFromGene'> - <soap:operation soapAction='ws.prodoric#getRegulatorsFromGene'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - <operation name='getProfileParameter'> - <soap:operation soapAction='ws.prodoric#getProfileParameter'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - <operation name='getProfile'> - <soap:operation soapAction='ws.prodoric#getProfile'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - - <operation name='getExpressionFromGene'> - <soap:operation soapAction='ws.prodoric#getExpressionFromGene'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - - <operation name='getGenome'> - <soap:operation soapAction='ws.prodoric#getGenome'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - <operation name='getUniProtAcc'> - <soap:operation soapAction='ws.prodoric#getUniProtAcc'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - - <operation name='hello'> - <soap:operation soapAction='ws.prodoric#hello'/> - <input> - <soap:body use='literal' namespace='ws.prodoric' /> - </input> - <output> - <soap:body use='literal' namespace='ws.prodoric' /> - </output> - </operation> - -</binding> - - -<service name='prodoric_webservice'> - <port name='prodoricPort' binding='tns:prodoricBinding'> - <soap:address location='http://134.169.104.13/webservice/prodoric_server.php'/> - </port> - -</service> -</definitions>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/b29c0312/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl ---------------------------------------------------------------------- diff --git a/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl b/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl deleted file mode 100644 index b3016fa..0000000 --- a/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl +++ /dev/null @@ -1,233 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<definitions xmlns:tns="http://www.ebi.ac.uk/webservices/whatizit/ws"; xmlns:xsd="http://www.w3.org/2001/XMLSchema"; xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"; xmlns:mime="http://schemas.xmlsoap.org/wsdl/mime/"; xmlns="http://schemas.xmlsoap.org/wsdl/"; targetNamespace="http://www.ebi.ac.uk/webservices/whatizit/ws"; name="whatizit"> - - <types> - <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"; targetNamespace="http://www.ebi.ac.uk/webservices/whatizit/ws"; version="1.0"> - - <xs:element xmlns:ns1="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns1:search" name="search"/> - <xs:complexType name="search"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="pipelineName"/> - <xs:element type="xs:string" minOccurs="0" name="query"/> - - <xs:element name="limit"> - <xs:simpleType> - <xs:restriction base="xs:int"> - <xs:minInclusive value="0"/> - <xs:maxExclusive value="10000"/> - </xs:restriction> - </xs:simpleType> - </xs:element> - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns2="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns2:searchResponse" name="searchResponse"/> - <xs:complexType name="searchResponse"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="return"/> - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns3="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns3:WhatizitException" name="WhatizitException"/> - <xs:complexType name="WhatizitException"> - - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="message"/> - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns4="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns4:contact" name="contact"/> - <xs:complexType name="contact"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="pipelineName"/> - - <xs:element type="xs:string" minOccurs="0" name="text"/> - <xs:element type="xs:boolean" name="convertToHtml"/> - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns5="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns5:contactResponse" name="contactResponse"/> - <xs:complexType name="contactResponse"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="return"/> - - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns6="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns6:queryPmid" name="queryPmid"/> - <xs:complexType name="queryPmid"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="pipelineName"/> - <xs:element type="xs:string" minOccurs="0" name="pmid"/> - </xs:sequence> - - </xs:complexType> - - <xs:element xmlns:ns7="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns7:queryPmidResponse" name="queryPmidResponse"/> - <xs:complexType name="queryPmidResponse"> - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="return"/> - </xs:sequence> - </xs:complexType> - - <xs:element xmlns:ns8="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns8:getPipelinesStatus" name="getPipelinesStatus"/> - - <xs:complexType name="getPipelinesStatus"/> - - <xs:element xmlns:ns9="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns9:getPipelinesStatusResponse" name="getPipelinesStatusResponse"/> - <xs:complexType name="getPipelinesStatusResponse"> - <xs:sequence> - <xs:element xmlns:ns10="http://www.ebi.ac.uk/webservices/whatizit/ws"; type="ns10:selectItem" minOccurs="0" name="return" maxOccurs="unbounded"/> - </xs:sequence> - </xs:complexType> - - <xs:complexType name="selectItem"> - - <xs:sequence> - <xs:element type="xs:string" minOccurs="0" name="description"/> - <xs:element type="xs:boolean" name="disabled"/> - <xs:element type="xs:string" minOccurs="0" name="label"/> - <xs:element type="xs:anyType" minOccurs="0" name="value"/> - </xs:sequence> - </xs:complexType> - </xs:schema> - </types> - - - - <message name="contact"> - <part element="tns:contact" name="parameters"/> - </message> - - <message name="contactResponse"> - <part element="tns:contactResponse" name="parameters"/> - </message> - - <message name="WhatizitException"> - <part element="tns:WhatizitException" name="fault"/> - - </message> - - <message name="getPipelinesStatus"> - <part element="tns:getPipelinesStatus" name="parameters"/> - </message> - - <message name="getPipelinesStatusResponse"> - <part element="tns:getPipelinesStatusResponse" name="parameters"/> - </message> - - <message name="queryPmid"> - <part element="tns:queryPmid" name="parameters"/> - - </message> - - <message name="queryPmidResponse"> - <part element="tns:queryPmidResponse" name="parameters"/> - </message> - - <message name="search"> - <part element="tns:search" name="parameters"/> - </message> - - <message name="searchResponse"> - <part element="tns:searchResponse" name="parameters"/> - - </message> - - - <portType name="whatizit"> - <operation name="contact"> - <input message="tns:contact"/> - <output message="tns:contactResponse"/> - <fault message="tns:WhatizitException" name="WhatizitException"/> - </operation> - <operation name="getPipelinesStatus"> - <input message="tns:getPipelinesStatus"/> - - <output message="tns:getPipelinesStatusResponse"/> - <fault message="tns:WhatizitException" name="WhatizitException"/> - </operation> - <operation name="queryPmid"> - <input message="tns:queryPmid"/> - <output message="tns:queryPmidResponse"/> - <fault message="tns:WhatizitException" name="WhatizitException"/> - </operation> - <operation name="search"> - - <input message="tns:search"/> - <output message="tns:searchResponse"/> - <fault message="tns:WhatizitException" name="WhatizitException"/> - </operation> - </portType> - - <binding type="tns:whatizit" name="pipelineBinding"> - <soap:binding style="document" transport="http://schemas.xmlsoap.org/soap/http"/> - <operation name="contact"> - <soap:operation soapAction=""/> - - <input> - <soap:body use="literal"/> - </input> - <output> - <soap:body use="literal"/> - </output> - <fault name="WhatizitException"> - <soap:fault use="literal" name="WhatizitException"/> - </fault> - - </operation> - <operation name="getPipelinesStatus"> - <soap:operation soapAction=""/> - <input> - <soap:body use="literal"/> - </input> - <output> - <soap:body use="literal"/> - </output> - - <fault name="WhatizitException"> - <soap:fault use="literal" name="WhatizitException"/> - </fault> - </operation> - <operation name="queryPmid"> - <soap:operation soapAction=""/> - <input> - <soap:body use="literal"/> - </input> - - <output> - <soap:body use="literal"/> - </output> - <fault name="WhatizitException"> - <soap:fault use="literal" name="WhatizitException"/> - </fault> - </operation> - <operation name="search"> - <soap:operation soapAction=""/> - - <input> - <soap:body use="literal"/> - </input> - <output> - <mime:multipartRelated> - <mime:part> - <soap:body parts="" use="literal"/> - </mime:part> - <mime:part> - - <mime:content type="text/xml" part="parameters"/> - </mime:part> - </mime:multipartRelated> - </output> - <fault name="WhatizitException"> - <soap:fault use="literal" name="WhatizitException"/> - </fault> - </operation> - </binding> - - <service name="whatizit"> - <port binding="tns:pipelineBinding" name="pipeline"> - <soap:address location="http://www.ebi.ac.uk:80/webservices/whatizit/ws"/> - </port> - </service> -</definitions> \ No newline at end of file
