new cwl tools which are custom
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/repo Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/commit/122dd14e Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/tree/122dd14e Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/diff/122dd14e Branch: refs/heads/cwl-browse Commit: 122dd14ef87a9de0db7251370b98f538a2a667ae Parents: 17cdbdd Author: ThilinaManamgoda <maanafun...@gmail.com> Authored: Mon Jun 6 18:36:41 2016 +0530 Committer: ThilinaManamgoda <maanafun...@gmail.com> Committed: Mon Jun 6 18:36:41 2016 +0530 ---------------------------------------------------------------------- .../CWLFiles/binding-test.cwl | 20 ---------------- .../CWLFiles/count-lines3-wf.cwl | 25 -------------------- taverna-cwl-activity-ui/CWLFiles/params2.cwl | 10 -------- 3 files changed, 55 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl ---------------------------------------------------------------------- diff --git a/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl b/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl deleted file mode 100644 index a72a583..0000000 --- a/taverna-cwl-activity-ui/CWLFiles/binding-test.cwl +++ /dev/null @@ -1,20 +0,0 @@ -#!/usr/bin/env cwl-runner - -class: CommandLineTool -cwlVersion: cwl:draft-3 - -inputs: - - id: reference - type: int - inputBinding: { position: 2 } - - - id: reads - type: - type: array - items: File - inputBinding: { prefix: "-YYY" } - inputBinding: { position: 3, prefix: "-XXX" } - -outputs: [] - -baseCommand: [bwa, mem] http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl ---------------------------------------------------------------------- diff --git a/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl b/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl deleted file mode 100644 index e22092a..0000000 --- a/taverna-cwl-activity-ui/CWLFiles/count-lines3-wf.cwl +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/env cwl-runner -class: Workflow -cwlVersion: cwl:draft-3 - -inputs: - - id: file12 - type: { type: array, items: File } - -outputs: - - id: count_output - type: { type: array, items: int } - source: "#step1/output" - -requirements: - - class: ScatterFeatureRequirement - -steps: - - id: step1 - run: wc2-tool.cwl - scatter: "#step1/file1" - inputs: - - id: file1 - source: "#file1" - outputs: - - id: output http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/122dd14e/taverna-cwl-activity-ui/CWLFiles/params2.cwl ---------------------------------------------------------------------- diff --git a/taverna-cwl-activity-ui/CWLFiles/params2.cwl b/taverna-cwl-activity-ui/CWLFiles/params2.cwl deleted file mode 100644 index 6352c4f..0000000 --- a/taverna-cwl-activity-ui/CWLFiles/params2.cwl +++ /dev/null @@ -1,10 +0,0 @@ -class: CommandLineTool -cwlVersion: cwl:draft-3 -requirements: - - class: InlineJavascriptRequirement - -inputs: {"$import": params_inc.yml} - -outputs: {"$import": params_inc.yml} - -baseCommand: "true"
