format is added to customtool1.cwl
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/repo Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/commit/a76e71b5 Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/tree/a76e71b5 Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/diff/a76e71b5 Branch: refs/heads/cwl-browse Commit: a76e71b57b82763bf5269b01583f1ccb44029fcc Parents: 2d28ba8 Author: ThilinaManamgoda <[email protected]> Authored: Mon Jun 20 03:55:30 2016 +0530 Committer: ThilinaManamgoda <[email protected]> Committed: Mon Jun 20 03:55:30 2016 +0530 ---------------------------------------------------------------------- taverna-cwl-activity-ui/CWLFiles/customtool1.cwl | 4 ++++ .../java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java | 2 -- 2 files changed, 4 insertions(+), 2 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/a76e71b5/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl ---------------------------------------------------------------------- diff --git a/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl b/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl index 13692d5..20939e7 100644 --- a/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl +++ b/taverna-cwl-activity-ui/CWLFiles/customtool1.cwl @@ -21,11 +21,15 @@ class: CommandLineTool cwlVersion: cwl:draft-3 +$namespaces: + edam: http://edamontology.org/ + inputs: - id: input_1 type: int label: input 1 testing label description: this is a short description of input 1 + format: edam:format_2323 - id: input_2 type: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/a76e71b5/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java ---------------------------------------------------------------------- diff --git a/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java b/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java index c509d11..6113aa8 100644 --- a/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java +++ b/taverna-cwl-activity-ui/src/main/java/org/apache/taverna/cwl/ui/serviceprovider/Testing.java @@ -84,8 +84,6 @@ public static void main(String[] args) { // System.out.println(file.getName()); Map cwlFile = (Map) cwlReader.load(new FileInputStream(file)); //processInputs(cwlFile); - if(file.getName().equals("bedtool-genomecov.cwl"))System.out.println(((String)(( ArrayList<Map>)cwlFile.get(INPUTS)).get(0).get("format")).split(":")[0]); - if(file.getName().equals("bedtool-genomecov.cwl"))System.out.println(((Map)(cwlFile.get("$namespaces"))).get("edam")); }catch(Exception e){ System.out.println(e.getMessage()); }
