See <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/234/changes>
Changes: [stain] Avoid duplicate ASF header [stain] Remove (c) Edward Kawas, The BioMoby Project [stain] Remove (c) Edward Kawas, The BioMoby Project ------------------------------------------ [...truncated 246 lines...] [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/configuration/taverna-database-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml (2 KB at 1.0 KB/sec) [INFO] Downloading: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/commons/taverna-commons/1.0.0-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/release/uk/org/taverna/commons/taverna-commons/1.0.0-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/external/uk/org/taverna/commons/taverna-commons/1.0.0-SNAPSHOT/maven-metadata.xml [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/commons/taverna-commons/1.0.0-SNAPSHOT/maven-metadata.xml (822 B at 0.6 KB/sec) [INFO] Downloading: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/configuration/taverna-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/release/uk/org/taverna/configuration/taverna-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/external/uk/org/taverna/configuration/taverna-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/uk/org/taverna/configuration/taverna-configuration-api/0.1.1-SNAPSHOT/maven-metadata.xml (2 KB at 1.2 KB/sec) [INFO] Downloading: http://repository.springsource.com/maven/bundles/release/net/sf/taverna/t2/core/reference-core-extensions/2.0.1-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://www.mygrid.org.uk/maven/snapshot-repository/net/sf/taverna/t2/core/reference-core-extensions/2.0.1-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/external/net/sf/taverna/t2/core/reference-core-extensions/2.0.1-SNAPSHOT/maven-metadata.xml [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/net/sf/taverna/t2/core/reference-core-extensions/2.0.1-SNAPSHOT/maven-metadata.xml (2 KB at 1.1 KB/sec) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ biomart-activity --- [INFO] Deleting <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target> [INFO] [INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ biomart-activity --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ biomart-activity --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/classes> [INFO] [INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ biomart-activity --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ biomart-activity --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/test-classes> [INFO] [INFO] --- maven-surefire-plugin:2.7.1:test (default-test) @ biomart-activity --- [INFO] Surefire report directory: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running net.sf.taverna.t2.activities.biomart.BiomartActivityFactoryTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec Results : Tests run: 2, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-bundle-plugin:2.3.7:bundle (default-bundle) @ biomart-activity --- [INFO] [INFO] >>> maven-source-plugin:2.1.2:jar (default) > generate-sources @ biomart-activity >>> [WARNING] Failed to getClass for org.apache.maven.plugin.source.SourceJarMojo [INFO] [INFO] <<< maven-source-plugin:2.1.2:jar (default) < generate-sources @ biomart-activity <<< [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (default) @ biomart-activity --- [INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar> [INFO] [INFO] >>> maven-source-plugin:2.1.2:test-jar (default) > generate-sources @ biomart-activity >>> [WARNING] Failed to getClass for org.apache.maven.plugin.source.TestSourceJarMojo [INFO] [INFO] <<< maven-source-plugin:2.1.2:test-jar (default) < generate-sources @ biomart-activity <<< [INFO] [INFO] --- maven-source-plugin:2.1.2:test-jar (default) @ biomart-activity --- [INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> [INFO] [INFO] --- maven-jar-plugin:2.3.1:test-jar (default) @ biomart-activity --- [INFO] Building jar: <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar> [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ biomart-activity --- [INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar> [INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/pom.xml> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.pom> [INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-sources.jar> [INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> [INFO] Installing <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar> to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/.repository/net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-tests.jar> [INFO] [INFO] --- maven-bundle-plugin:2.3.7:install (default-install) @ biomart-activity --- [INFO] Installing net/sf/taverna/t2/activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Taverna 2 Biomart Activity UI 2.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [WARNING] Failure to transfer org.apache.maven.plugins:maven-install-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-install-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out [WARNING] Failure to transfer org.apache.maven.plugins:maven-resources-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-resources-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out [WARNING] Failure to transfer org.apache.maven.plugins:maven-deploy-plugin/maven-metadata.xml from http://snapshots.maven.codehaus.org/maven2/ was cached in the local repository, resolution will not be reattempted until the update interval of Maven Snapshots has elapsed or updates are forced. Original error: Could not transfer metadata org.apache.maven.plugins:maven-deploy-plugin/maven-metadata.xml from/to Maven Snapshots (http://snapshots.maven.codehaus.org/maven2/): Connect to snapshots.maven.codehaus.org:80 [snapshots.maven.codehaus.org/52.5.67.234] failed: Connection timed out [INFO] Downloading: http://repository.springsource.com/maven/bundles/release/net/sf/taverna/t2/ui-api/activity-icons-api/2.0-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/external/net/sf/taverna/t2/ui-api/activity-icons-api/2.0-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://www.mygrid.org.uk/maven/snapshot-repository/net/sf/taverna/t2/ui-api/activity-icons-api/2.0-SNAPSHOT/maven-metadata.xml [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/net/sf/taverna/t2/ui-api/activity-icons-api/2.0-SNAPSHOT/maven-metadata.xml (2 KB at 1.0 KB/sec) [INFO] Downloading: 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http://repository.springsource.com/maven/bundles/release/net/sf/taverna/t2/ui-impl/2.0-SNAPSHOT/maven-metadata.xml [INFO] Downloading: http://repository.springsource.com/maven/bundles/external/net/sf/taverna/t2/ui-impl/2.0-SNAPSHOT/maven-metadata.xml [INFO] Downloaded: http://www.mygrid.org.uk/maven/snapshot-repository/net/sf/taverna/t2/ui-impl/2.0-SNAPSHOT/maven-metadata.xml (807 B at 0.6 KB/sec) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ biomart-activity-ui --- [INFO] Deleting <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/target> [INFO] [INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ biomart-activity-ui --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ biomart-activity-ui --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/src/main/java/net/sf/taverna/t2/activities/biomart/servicedescriptions/BiomartServiceDescription.java>:[1,2] class, interface, or enum expected [INFO] 1 error [INFO] ------------------------------------------------------------- [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] MartService ........................................ SUCCESS [06:36 min] [INFO] Taverna 2 Biomart Activity. ........................ SUCCESS [ 20.731 s] [INFO] Taverna 2 Biomart Activity UI ...................... FAILURE [ 28.003 s] [INFO] Taverna 2 Biomoby Activity ......................... SKIPPED [INFO] Taverna 2 Biomoby Activity UI ...................... SKIPPED [INFO] Taverna 2 NCBI web service Activity UI ............. SKIPPED [INFO] Taverna 2 Soaplab Activity ......................... SKIPPED [INFO] Taverna 2 Soaplab Activity UI ...................... SKIPPED [INFO] Apache Taverna Plugin for Bioinformatics ........... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 07:32 min [INFO] Finished at: 2016-09-07T12:40:07+00:00 [INFO] Final Memory: 42M/444M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project biomart-activity-ui: Compilation failure [ERROR] <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/src/main/java/net/sf/taverna/t2/activities/biomart/servicedescriptions/BiomartServiceDescription.java>:[1,2] class, interface, or enum expected [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :biomart-activity-ui [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/pom.xml> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT.pom [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-sources.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-sources.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-test-sources.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-test-sources.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-martservice/target/martservice-2.0.1-SNAPSHOT-tests.jar> to org.biomart/martservice/2.0.1-SNAPSHOT/martservice-2.0.1-SNAPSHOT-tests.jar Compressed 689.85 KB of artifacts by 46.4% relative to #233 [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-ncbi-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/ncbi-activity-ui/3.0.1-SNAPSHOT/ncbi-activity-ui-3.0.1-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/biomart-activity-ui/2.0-SNAPSHOT/biomart-activity-ui-2.0-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/pom.xml> to org.apache.taverna.bioinformatics/apache-taverna-plugin-bioinformatics/3.1.0-incubating-SNAPSHOT/apache-taverna-plugin-bioinformatics-3.1.0-incubating-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomoby-activity/pom.xml> to net.sf.taverna.t2.activities/biomoby-activity/2.0.1-SNAPSHOT/biomoby-activity-2.0.1-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-soaplab-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/soaplab-activity-ui/2.0-SNAPSHOT/soaplab-activity-ui-2.0-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomoby-activity-ui/pom.xml> to net.sf.taverna.t2.ui-activities/biomoby-activity-ui/2.0.1-SNAPSHOT/biomoby-activity-ui-2.0.1-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/pom.xml> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.pom [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-sources.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-sources.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-test-sources.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-biomart-activity/target/biomart-activity-2.0.1-SNAPSHOT-tests.jar> to net.sf.taverna.t2.activities/biomart-activity/2.0.1-SNAPSHOT/biomart-activity-2.0.1-SNAPSHOT-tests.jar [JENKINS] Archiving <https://builds.apache.org/job/incubator-taverna-plugin-bioinformatics/ws/taverna-soaplab-activity/pom.xml> to net.sf.taverna.t2.activities/soaplab-activity/3.0.1-SNAPSHOT/soaplab-activity-3.0.1-SNAPSHOT.pom No prior successful build to compare, so performing full copy of artifacts channel stopped No JDK named ?jdk-1.8.0? found
