Author: buildbot
Date: Fri Sep 23 21:17:01 2016
New Revision: 998094
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/community/references.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
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Modified: websites/staging/taverna/trunk/content/community/references.html
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--- websites/staging/taverna/trunk/content/community/references.html (original)
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@@ -189,6 +189,9 @@ h2:hover > .headerlink, h3:hover > .head
See also <a href="/community/publications">publications</a> and <a
href="/community/cite">how to cite Taverna</a>.</em></p>
<p><em>Please suggest an <a href="/community/edit">edit</a> of the website to
add or correct a publication listing.</em></p>
<h2 id="2016">2016<a class="headerlink" href="#2016" title="Permanent
link">¶</a></h2>
+<p>Pinar Alper, Khalid Belhajjame, Carole A. Goble. (2016). <strong>Automatic
vs Manual Provenance Abstractions: Mind the Gap.</strong>
+Preprint accepted to the 2016 workshop on the Theory and Applications of
Provenance, TAPP 2016. <a
href="https://arxiv.org/abs/1605.06669v1";>arXiv:1605.06669v1</a> [cs.SE]
+<a
href="https://www.usenix.org/system/files/conference/tapp16/tapp16-paper-alper.pdf";>[download
PDF]</a></p>
<p>Arzu Tugce Guler, Cathelijn J. F. Waaijer, Magnus Palmblad. (2016).
<strong>Scientific workflows for bibliometrics.</strong>
In: <em>Scientometrics</em>. <strong>107</strong>(2): 385–398.
@@ -198,57 +201,57 @@ In: <em>Scientometrics</em>. <strong>107
In: <em>Annals of the Rheumatic Diseases</em> 2016 <strong>75</strong>(A8).
<a
href="http://dx.doi.org/10.1136/annrheumdis-2016-209124.18";>doi:10.1136/annrheumdis-2016-209124.18</a></p>
<h2 id="2015">2015<a class="headerlink" href="#2015" title="Permanent
link">¶</a></h2>
+<p>Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith.
(2015).
+<strong>BioAcoustica: a free and open repository and analysis platform for
bioacoustics</strong>
+In <em>Database</em> <strong>2015</strong>(bav054).
+<a
href="http://dx.doi.org/10.1093/database/bav054";>doi:10.1093/database/bav054</a></p>
<p>Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina
Hettne, Raúl Palma,
Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean
Bechhofer,
Graham Klyne, Carole Goble. (2015).
<strong>Using a suite of ontologies for preserving workflow-centric research
objects.</strong>
In: <em>Journal of Web Semantics: Scence, Services and Agents on the World
Wide Web</em>. <strong>32</strong>: 16–42.
<a
href="http://dx.doi.org/10.1016/j.websem.2015.01.003";>doi:10.1016/j.websem.2015.01.003</a></p>
-<p>Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015).
-<strong>Scientific workflow optimization for improved peptide and protein
identification.</strong>
-In: <em>BMC Bioinformatics</em> <strong>16</strong>(1): 1–13.
-<a
href="http://dx.doi.org/10.1186/s12859-015-0714-x";>doi:10.1186/s12859-015-0714-x</a></p>
-<p>Steve OâHagan, Douglas B. Kell. (2015).
-<strong>Software review: the KNIME workflow environment and its applications
in genetic programming and machine learning</strong>.
-In: <em>Genetic Programming and Evolvable Machines</em> <strong>16</strong>(3)
387–391.
-<a
href="http://dx.doi.org/10.1007/s10710-015-9247-3";>doi:10.1007/s10710-015-9247-3</a>
-<a
href="http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf";>[preprint]</a></p>
<p>Renato De Giovanni, Alan R. Williams, Vera Hernández Ernst, Robert
Kulawik, Francisco Quevedo Fernandez,
Alex R. Hardisty. (2015).
<strong>ENM Components: a new set of web service-based workflow components for
ecological niche modelling</strong>.
In: <em>Ecography</em> <strong>39</strong>(4).
<a href="http://dx.doi.org/10.1111/ecog.01552";>doi:10.1111/ecog.01552</a></p>
-<p>Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith.
(2015).
-<strong>BioAcoustica: a free and open repository and analysis platform for
bioacoustics</strong>
-In <em>Database</em> <strong>2015</strong>(bav054).
-<a
href="http://dx.doi.org/10.1093/database/bav054";>doi:10.1093/database/bav054</a></p>
-<p>Yassene Mohammed, Christoph H. Borchers. (2015).
-<strong>An extensive library of surrogate peptides for all human
proteins</strong>
-<em>Journal of Proteomics</em> <strong>129</strong>: 93–97.
-<a
href="http://dx.doi.org/10.1016/j.jprot.2015.07.025";>doi:10.1016/j.jprot.2015.07.025</a>
-<a
href="https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins";>[researchgate]</a>
-<em>preprint not currently available</em></p>
-<p>Ji Liu, Esther Pacitti, Patrick Valduriez, Marta Mattoso. (2015).
-<strong>A Survey of Data-Intensive Scientific Workflow Management</strong>
-In: <em>Journal of Grid Computing</em> <strong>13</strong>: 457–493.
-<a
href="http://dx.doi.org/10.1007/s10723-015-9329-8";>doi:10.1007/s10723-015-9329-8</a>
-<a
href="http://www-sop.inria.fr/members/Patrick.Valduriez/pmwiki/Patrick/uploads//Publications/jogc2015";>[pdf]</a>
-<a
href="https://www.researchgate.net/publication/304292492_A_Survey_on_Scheduling_Workflows_in_Cloud_Environment";>[researchgate]</a></p>
<p>Susana Sánchez Expósito, Pablo MartÃn, Jose Enrique RuÃz, Lourdes
Verdes-Montenegro, Julian Garrido,
Raül Sirvent Pardell, Antonio RuÃz Falcó, Rosa Badia. (2015).
<strong>Web services as building blocks for Science Gateways in
Astrophysics</strong>.
At: <em>7th International Workshop on Science Gateways (IWSG) 2015</em>
<a href="http://dx.doi.org/10.1109/IWSG.2015.7";>doi:10.1109/IWSG.2015.7</a>
<a
href="http://amiga.iaa.es/FCKeditor/UserFiles/File/BuildingBlocks.pdf";>[pdf]</a></p>
+<p>Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015).
+<strong>Scientific workflow optimization for improved peptide and protein
identification.</strong>
+In: <em>BMC Bioinformatics</em> <strong>16</strong>(1): 1–13.
+<a
href="http://dx.doi.org/10.1186/s12859-015-0714-x";>doi:10.1186/s12859-015-0714-x</a></p>
+<p>Jeremy Leipzig. (2015).
+<strong>A review of bioinformatic pipeline frameworks</strong>.
+In: <em>Briefings in bioinformatics</em> (2016) 1–7 bbw020.<br />
+<a href="http://dx.doi.org/10.1093/bib/bbw020";>doi:10.1093/bib/bbw020</a></p>
+<p>Ji Liu, Esther Pacitti, Patrick Valduriez, Marta Mattoso. (2015).
+<strong>A Survey of Data-Intensive Scientific Workflow Management</strong>
+In: <em>Journal of Grid Computing</em> <strong>13</strong>: 457–493.
+<a
href="http://dx.doi.org/10.1007/s10723-015-9329-8";>doi:10.1007/s10723-015-9329-8</a>
+<a
href="http://www-sop.inria.fr/members/Patrick.Valduriez/pmwiki/Patrick/uploads//Publications/jogc2015";>[pdf]</a>
+<a
href="https://www.researchgate.net/publication/304292492_A_Survey_on_Scheduling_Workflows_in_Cloud_Environment";>[researchgate]</a></p>
<p>Fabrizio Marozzo, Domenico Talia, Paolo Trunfio. (2015).
<strong>JS4Cloud: script-based workflow programming for scalable data analysis
on cloud platforms</strong>
In: <em>Concurrency and Computation: Practice and Experience</em>.
<strong>27</strong>(17)" 5214–5237.
<a href="http://dx.doi.org/10.1002/cpe.3563";>doi:10.1002/cpe.3563</a>
<a
href="https://www.researchgate.net/publication/280971659_JS4Cloud_Script-based_workflow_programming_for_scalable_data_analysis_on_cloud_platforms";>[researchgate]</a></p>
-<p>Jeremy Leipzig. (2015).
-<strong>A review of bioinformatic pipeline frameworks</strong>.
-In: <em>Briefings in bioinformatics</em> (2016) 1–7 bbw020.<br />
-<a href="http://dx.doi.org/10.1093/bib/bbw020";>doi:10.1093/bib/bbw020</a></p>
+<p>Yassene Mohammed, Christoph H. Borchers. (2015).
+<strong>An extensive library of surrogate peptides for all human
proteins</strong>
+<em>Journal of Proteomics</em> <strong>129</strong>: 93–97.
+<a
href="http://dx.doi.org/10.1016/j.jprot.2015.07.025";>doi:10.1016/j.jprot.2015.07.025</a>
+<a
href="https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins";>[researchgate]</a>
+<em>preprint not currently available</em></p>
+<p>Steve OâHagan, Douglas B. Kell. (2015).
+<strong>Software review: the KNIME workflow environment and its applications
in genetic programming and machine learning</strong>.
+In: <em>Genetic Programming and Evolvable Machines</em> <strong>16</strong>(3)
387–391.
+<a
href="http://dx.doi.org/10.1007/s10710-015-9247-3";>doi:10.1007/s10710-015-9247-3</a>
+<a
href="http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf";>[preprint]</a></p>
<h2 id="2014">2014<a class="headerlink" href="#2014" title="Permanent
link">¶</a></h2>
<p>Pinar Alper, Carole A Goble, Khalid Belhajjame. (2014).
<strong>"On assisting scientific data curation in collection-based dataflows
using labels,"</strong>
