http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/PortProfile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/PortProfile.java b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/PortProfile.java new file mode 100644 index 0000000..d89b571 --- /dev/null +++ b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/PortProfile.java @@ -0,0 +1,22 @@ +package io.github.taverna_extras.component.api.profile; +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +public interface PortProfile extends AnnotatedElement { +}
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/Profile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/Profile.java b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/Profile.java new file mode 100644 index 0000000..c08ddc9 --- /dev/null +++ b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/Profile.java @@ -0,0 +1,65 @@ +package io.github.taverna_extras.component.api.profile; +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +import java.util.List; +import java.util.Map; + +import io.github.taverna_extras.component.api.ComponentException; +import io.github.taverna_extras.component.api.NamedItem; +import io.github.taverna_extras.component.api.Registry; + +import org.apache.jena.ontology.OntModel; + +public interface Profile extends NamedItem, AnnotatedElement { + + Registry getComponentRegistry(); + + String getXML() throws ComponentException; + + io.github.taverna_extras.component.api.profile.doc.Profile getProfileDocument() + throws ComponentException; + + String getId(); + + String getOntologyLocation(String ontologyId); + + Map<String, String> getPrefixMap() throws ComponentException; + + OntModel getOntology(String ontologyId); + + List<PortProfile> getInputPortProfiles(); + + List<SemanticAnnotationProfile> getInputSemanticAnnotationProfiles() + throws ComponentException; + + List<PortProfile> getOutputPortProfiles(); + + List<SemanticAnnotationProfile> getOutputSemanticAnnotationProfiles() + throws ComponentException; + + List<ActivityProfile> getActivityProfiles(); + + List<SemanticAnnotationProfile> getActivitySemanticAnnotationProfiles() + throws ComponentException; + + ExceptionHandling getExceptionHandling(); + + void delete() throws ComponentException; +} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/SemanticAnnotationProfile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/SemanticAnnotationProfile.java b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/SemanticAnnotationProfile.java new file mode 100644 index 0000000..c7e040f --- /dev/null +++ b/taverna-component-repository-api/src/main/java/io/github/taverna_extras/component/api/profile/SemanticAnnotationProfile.java @@ -0,0 +1,72 @@ +package io.github.taverna_extras.component.api.profile; +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +import java.util.List; + +import org.apache.jena.ontology.Individual; +import org.apache.jena.ontology.OntClass; +import org.apache.jena.ontology.OntModel; +import org.apache.jena.ontology.OntProperty; + +public interface SemanticAnnotationProfile { + + /** + * Returns the ontology that defines semantic annotation. + * + * @return the ontology that defines semantic annotation + */ + OntModel getOntology(); + + /** + * Returns the predicate for the semantic annotation. + * + * @return the predicate for the semantic annotation + */ + OntProperty getPredicate(); + + String getPredicateString(); + + String getClassString(); + + /** + * Returns the individual that the semantic annotation must use. + * + * May be null if no explicit individual is required. + * + * @return the individual that the semantic annotation must use + */ + Individual getIndividual(); + + /** + * Returns the individuals in the range of the predicate defined in the + * ontology. + * + * @return the individuals in the range of the predicate defined in the + * ontology + */ + List<Individual> getIndividuals(); + + Integer getMinOccurs(); + + Integer getMaxOccurs(); + + OntClass getRangeClass(); + +} \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Component.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Component.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Component.java deleted file mode 100644 index e014fb9..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Component.java +++ /dev/null @@ -1,89 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.net.URL; -import java.util.SortedMap; - -import org.apache.taverna.scufl2.api.container.WorkflowBundle; - -/** - * The abstract interface supported by a component. - * - * @author Donal Fellows - * @author David Withers - */ -public interface Component extends NamedItem { - /** - * @return the name of the Component. - */ - @Override - String getName(); - - /** - * Returns the URL for the Component. - * - * @return the URL for the Component. - */ - URL getComponentURL(); - - /** - * Creates a new version of this Component. - * - * @param bundle - * the workflow that the new ComponentVersion will use. - * @return a new version of this Component. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - Version addVersionBasedOn(WorkflowBundle bundle, String revisionComment) - throws ComponentException; - - /** - * Returns the ComponentVersion that has the specified version number. - * - * @param version - * the version number of the ComponentVersion to return. - * @return the ComponentVersion that has the specified version number. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - Version getComponentVersion(Integer version) throws ComponentException; - - /** - * @return the description of the Component. - */ - @Override - String getDescription(); - - /** - * Returns a SortedMap of version number to ComponentVersion. - * <p> - * The returned map is sorted increasing numeric order. - * - * @return a SortedMap of version number to ComponentVersion. - */ - SortedMap<Integer, Version> getComponentVersionMap(); - - Registry getRegistry(); - - Family getFamily(); - - void delete() throws ComponentException; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentException.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentException.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentException.java deleted file mode 100644 index 044903e..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentException.java +++ /dev/null @@ -1,48 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * Thrown when there is a problem interacting with a ComponentRegistry. - * - * @author David Withers - */ -public class ComponentException extends Exception { - private static final long serialVersionUID = -5222074350812438467L; - - public ComponentException() { - super(); - } - - public ComponentException(String message, Throwable cause) { - super(message, cause); - } - - public ComponentException(String message) { - super(message); - } - - public ComponentException(Throwable cause) { - super(cause); - } - - public ComponentException(String messageTemplate, Object...parameters) { - super(String.format(messageTemplate, parameters)); - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentFactory.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentFactory.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentFactory.java deleted file mode 100644 index 5b69b61..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/ComponentFactory.java +++ /dev/null @@ -1,45 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.net.URL; - -import io.github.taverna_extras.component.api.profile.Profile; - -public interface ComponentFactory { - public Registry getRegistry(URL registryBase) throws ComponentException; - - public Family getFamily(URL registryBase, String familyName) - throws ComponentException; - - public Component getComponent(URL registryBase, String familyName, - String componentName) throws ComponentException; - - public Version getVersion(URL registryBase, String familyName, - String componentName, Integer componentVersion) - throws ComponentException; - - public Version getVersion(Version.ID ident) throws ComponentException; - - public Component getComponent(Version.ID ident) throws ComponentException; - - public Profile getProfile(URL url) throws ComponentException; - - public Profile getBaseProfile() throws ComponentException; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Family.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Family.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Family.java deleted file mode 100644 index ca4ec54..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Family.java +++ /dev/null @@ -1,117 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.util.List; - -import io.github.taverna_extras.component.api.profile.Profile; -import org.apache.taverna.scufl2.api.container.WorkflowBundle; - -public interface Family extends NamedItem { - /** - * Creates a new Component and adds it to this ComponentFamily. - * - * @param componentName - * the name of the Component to create. Must not be null. - * @param bundle - * the workflow for the Component. Must not be null. - * @return the new Component. - * @throws ComponentException - * <ul> - * <li>if componentName is null, - * <li>if dataflow is null, - * <li>if a Component with this name already exists, - * <li>if there is a problem accessing the ComponentRegistry. - * </ul> - */ - Version createComponentBasedOn(String componentName, String description, - WorkflowBundle bundle) throws ComponentException; - - /** - * Returns the Component with the specified name. - * <p> - * If this ComponentFamily does not contain a Component with the specified - * name <code>null</code> is returned. - * - * @param componentName - * the name of the Component to return. Must not be null. - * @return the Component with the specified name. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - Component getComponent(String componentName) throws ComponentException; - - /** - * Removes the specified Component from this ComponentFamily. - * <p> - * If this ComponentFamily does not contain the Component this method has no - * effect. - * - * @param component - * the Component to remove. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - void removeComponent(Component component) throws ComponentException; - - /** - * Returns all the Components in this ComponentFamily. - * <p> - * If this ComponentFamily does not contain any Components an empty list is - * returned. - * - * @return all the Components in this ComponentFamilies. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - List<Component> getComponents() throws ComponentException; - - /** - * Returns the ComponentProfile for this ComponentFamily. - * - * @return the ComponentProfile for this ComponentFamily. - * @throws ComponentException - */ - Profile getComponentProfile() throws ComponentException; - - /** - * Returns the ComponentRegistry that contains this ComponentFamily. - * - * @return the ComponentRegistry that contains this ComponentFamily. - */ - Registry getComponentRegistry(); - - /** - * @return the name of the component Family. - */ - @Override - String getName(); - - /** - * @return the description of the component Family. - */ - @Override - String getDescription(); - - /** - * Delete this family from its registry. - * @throws ComponentException - */ - void delete() throws ComponentException; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/License.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/License.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/License.java deleted file mode 100644 index 2906288..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/License.java +++ /dev/null @@ -1,23 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -public interface License extends NamedItem { - public String getAbbreviation(); -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/NamedItem.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/NamedItem.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/NamedItem.java deleted file mode 100644 index 775e515..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/NamedItem.java +++ /dev/null @@ -1,26 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -public interface NamedItem { - /** Name this entity. */ - public String getName(); - /** Describe this entity. */ - public String getDescription(); -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Registry.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Registry.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Registry.java deleted file mode 100644 index e6d1e23..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Registry.java +++ /dev/null @@ -1,158 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - - -import java.net.URL; -import java.util.List; -import java.util.Set; - -import io.github.taverna_extras.component.api.profile.Profile; - -public interface Registry { - - License getPreferredLicense() throws ComponentException; - - Set<Version.ID> searchForComponents(String prefixString, String text) - throws ComponentException; - - /** - * Returns all the ComponentFamilies in this ComponetRegistry. - * <p> - * If this ComponentRegistry does not contain any ComponentFamilies an empty - * list is returned. - * - * @return all the ComponentFamilies in this ComponetRegistry. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - List<Family> getComponentFamilies() throws ComponentException; - - List<License> getLicenses() throws ComponentException; - - List<SharingPolicy> getPermissions() throws ComponentException; - - /** - * Adds a ComponentProfile to this ComponentRegistry. - * - * @param componentProfile - * the ComponentProfile to add. Must not be null. - * @param sharingPolicy - * @param license - * @return the ComponentProfile added to this ComponentRegistry. - * @throws ComponentException - * <ul> - * <li>if componentProfile is null, - * <li>if there is a problem accessing the ComponentRegistry. - * </ul> - */ - Profile addComponentProfile(Profile componentProfile, License license, - SharingPolicy sharingPolicy) throws ComponentException; - - /** - * Returns all the ComponentProfiles in this ComponetRegistry. - * <p> - * If this ComponentRegistry does not contain any ComponentProfiles an empty - * list is returned. - * - * @return all the ComponentProfiles in this ComponetRegistry. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - List<Profile> getComponentProfiles() throws ComponentException; - - /** - * Returns the ComponentProfile with the given ID in this ComponetRegistry. - * <p> - * If this ComponentRegistry does not contain the ComponentProfile, a - * <tt>null</tt> is returned. - * - * @return the matching ComponentProfile in this ComponetRegistry, or - * <tt>null</tt> if there is no such thing. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - Profile getComponentProfile(String id) throws ComponentException; - - String getRegistryBaseString(); - - /** - * Returns the location of this ComponentRepository. - * - * @return the location of this ComponentRepository - */ - URL getRegistryBase(); - - /** - * Removes a the ComponentFamily with the specified name from this - * ComponentRegistry. - * <p> - * If this ComponentRegistry does not contain a ComponentFamily with the - * specified name this method has no effect. - * - * @param componentFamily - * the ComponentFamily to remove. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - void removeComponentFamily(Family componentFamily) throws ComponentException; - - /** - * Creates a new ComponentFamily and adds it to this ComponentRegistry. - * - * @param familyName - * the name of the ComponentFamily to create. Must not be null. - * @param componentProfile - * the ComponentProfile for the new ComponentFamily. Must not be - * null. - * @param sharingPolicy - * the SharingPolicy to use for the new ComponentFamily. - * @return the new ComponentFamily - * @throws ComponentException - * <ul> - * <li>if familyName is null, - * <li>if componentProfile is null, - * <li>if a ComponentFamily with this name already exists, - * <li>if there is a problem accessing the ComponentRegistry. - * </ul> - */ - Family createComponentFamily(String familyName, Profile componentProfile, - String description, License license, SharingPolicy sharingPolicy) - throws ComponentException; - - /** - * Returns the ComponentFamily with the specified name. - * <p> - * If this ComponentRegistry does not contain a ComponentFamily with the - * specified name <code>null</code> is returned. - * - * @param familyName - * the name of the ComponentFamily to return. Must not be null. - * @return the ComponentFamily with the specified name in this - * ComponentRepository or null if none exists. - * @throws ComponentException - * if there is a problem accessing the ComponentRegistry. - */ - Family getComponentFamily(String familyName) throws ComponentException; - - /** - * @return A description of the type of registry this is. - */ - String getRegistryTypeName(); -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/SharingPolicy.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/SharingPolicy.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/SharingPolicy.java deleted file mode 100644 index 9965339..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/SharingPolicy.java +++ /dev/null @@ -1,32 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * @author alanrw - * - */ -public interface SharingPolicy { - - /** - * @return The user-relevant name of the permission - */ - public abstract String getName(); - -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Version.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Version.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Version.java deleted file mode 100644 index 2929ed0..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/Version.java +++ /dev/null @@ -1,224 +0,0 @@ -package io.github.taverna_extras.component.api; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.io.Serializable; -import java.net.URL; - -import org.apache.taverna.scufl2.api.container.WorkflowBundle; - -public interface Version { - /** @return The version number of this version */ - Integer getVersionNumber(); - - /** @return The description of this version */ - String getDescription(); - - /** @return The implementation for this version */ - WorkflowBundle getImplementation() throws ComponentException; - - /** @return The component of which this is a version */ - Component getComponent(); - - /** @return The identification token for this version */ - ID getID(); - - URL getHelpURL(); - - interface ID extends Serializable { - /** @return The name of the family of the component to which we refer to */ - String getFamilyName(); - - /** @return The base URL of the registry containing the component */ - URL getRegistryBase(); - - /** - * @return The name of the component referred to, unique within its - * family - */ - String getComponentName(); - - /** - * @return The version number of the version of the component referred - * to - */ - Integer getComponentVersion(); - - /** - * Tests whether this ID is equal to the given one, <i>excluding</i> the - * version. - * - * @param id - * The ID to compare to. - * @return A boolean - */ - boolean mostlyEqualTo(ID id); - - /** - * Tests whether this ID is equal to the given component, - * <i>excluding</i> the version. - * - * @param component - * The component to compare to. - * @return A boolean - */ - boolean mostlyEqualTo(Component component); - } - - class Identifier implements ID { - private static final long serialVersionUID = 1139928258250264997L; - - private final URL registryBase; - private final String familyName; - private final String componentName; - private final Integer componentVersion; - - public Identifier(URL registryBase, String familyName, - String componentName, Integer componentVersion) { - super(); - this.registryBase = registryBase; - this.familyName = familyName; - this.componentName = componentName; - this.componentVersion = componentVersion; - } - - /** - * @return the registryBase - */ - @Override - public URL getRegistryBase() { - return registryBase; - } - - /** - * @return the familyName - */ - @Override - public String getFamilyName() { - return familyName; - } - - /** - * @return the componentName - */ - @Override - public String getComponentName() { - return componentName; - } - - /** - * @return the componentVersion - */ - @Override - public Integer getComponentVersion() { - return componentVersion; - } - - @Override - public int hashCode() { - final int prime = 31; - int result = 1; - result *= prime; - result += (componentName == null) ? 0 : componentName.hashCode(); - result *= prime; - result += (componentVersion == null) ? 0 : componentVersion - .hashCode(); - result *= prime; - result += (familyName == null) ? 0 : familyName.hashCode(); - result *= prime; - result += (registryBase == null) ? 0 : registryBase.hashCode(); - return result; - } - - @Override - public boolean equals(Object obj) { - if (this == obj) - return true; - if (obj == null) - return false; - if (!ID.class.isAssignableFrom(obj.getClass())) - return false; - ID other = (ID) obj; - if (componentName == null) { - if (other.getComponentName() != null) - return false; - } else if (!componentName.equals(other.getComponentName())) - return false; - if (componentVersion == null) { - if (other.getComponentVersion() != null) - return false; - } else if (!componentVersion.equals(other.getComponentVersion())) - return false; - if (familyName == null) { - if (other.getFamilyName() != null) - return false; - } else if (!familyName.equals(other.getFamilyName())) - return false; - if (registryBase == null) { - if (other.getRegistryBase() != null) - return false; - } else if (!registryBase.toString().equals( - other.getRegistryBase().toString())) - // NB: Comparison of URLs is on their string form! - return false; - return true; - } - - @Override - public String toString() { - return getComponentName() + " V. " + getComponentVersion() - + " in family " + getFamilyName() + " on " - + getRegistryBase().toExternalForm(); - } - - @Override - public boolean mostlyEqualTo(ID id) { - if (this == id) - return true; - if (id == null) - return false; - if (getClass() != id.getClass()) - return false; - if (componentName == null) { - if (id.getFamilyName() != null) - return false; - } else if (!componentName.equals(id.getComponentName())) - return false; - if (familyName == null) { - if (id.getFamilyName() != null) - return false; - } else if (!familyName.equals(id.getFamilyName())) - return false; - if (registryBase == null) { - if (id.getRegistryBase() != null) - return false; - } else if (!registryBase.toString().equals( - id.getRegistryBase().toString())) - // NB: Comparison of URLs is on their string form! - return false; - return true; - } - - @Override - public boolean mostlyEqualTo(Component c) { - return mostlyEqualTo(new Identifier(c.getRegistry() - .getRegistryBase(), c.getFamily().getName(), c.getName(), 0)); - } - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentConfig.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentConfig.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentConfig.java deleted file mode 100644 index 7de348c..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentConfig.java +++ /dev/null @@ -1,23 +0,0 @@ -package io.github.taverna_extras.component.api.config; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -public interface ComponentConfig { - String URI = "http://ns.taverna.org.uk/2010/activity/component";; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentPropertyNames.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentPropertyNames.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentPropertyNames.java deleted file mode 100644 index 457161d..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/config/ComponentPropertyNames.java +++ /dev/null @@ -1,32 +0,0 @@ -package io.github.taverna_extras.component.api.config; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * The names of properties used in JSON configurations associated with - * components. - * - * @author Donal Fellows - */ -public interface ComponentPropertyNames { - String REGISTRY_BASE = "registryBase"; - String FAMILY_NAME = "familyName"; - String COMPONENT_NAME = "componentName"; - String COMPONENT_VERSION = "componentVersion"; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/package-info.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/package-info.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/package-info.java deleted file mode 100644 index a0b3e2f..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/package-info.java +++ /dev/null @@ -1,25 +0,0 @@ -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -/** - * An abstract API for working with components in a registry. - * @author Donal Fellows - * @author David Withers - */ -package io.github.taverna_extras.component.api; \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ActivityProfile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ActivityProfile.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ActivityProfile.java deleted file mode 100644 index 8795c8a..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ActivityProfile.java +++ /dev/null @@ -1,23 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -public interface ActivityProfile extends AnnotatedElement { - -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/AnnotatedElement.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/AnnotatedElement.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/AnnotatedElement.java deleted file mode 100644 index 0ad0da4..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/AnnotatedElement.java +++ /dev/null @@ -1,28 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.util.List; - -import io.github.taverna_extras.component.api.ComponentException; - -public interface AnnotatedElement { - List<SemanticAnnotationProfile> getSemanticAnnotations() - throws ComponentException; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionHandling.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionHandling.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionHandling.java deleted file mode 100644 index ee5810d..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionHandling.java +++ /dev/null @@ -1,47 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.util.ArrayList; -import java.util.List; - -/** - * @author alanrw - * - */ -public class ExceptionHandling { - private final boolean failLists; - private final List<HandleException> remapped = new ArrayList<HandleException>(); - - public ExceptionHandling( - io.github.taverna_extras.component.api.profile.doc.ExceptionHandling proxied) { - for (io.github.taverna_extras.component.api.profile.doc.HandleException he : proxied - .getHandleException()) - remapped.add(new HandleException(he)); - this.failLists = proxied.getFailLists() != null; - } - - public boolean failLists() { - return failLists; - } - - public List<HandleException> getHandleExceptions() { - return remapped; - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionReplacement.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionReplacement.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionReplacement.java deleted file mode 100644 index 69163cf..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/ExceptionReplacement.java +++ /dev/null @@ -1,43 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - - -import io.github.taverna_extras.component.api.profile.doc.Replacement; - -/** - * @author alanrw - * - */ -public class ExceptionReplacement { - private final String id, message; - - public ExceptionReplacement(Replacement replacement) { - id = replacement.getReplacementId(); - message = replacement.getReplacementMessage(); - } - - public String getReplacementId() { - return id; - } - - public String getReplacementMessage() { - return message; - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/HandleException.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/HandleException.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/HandleException.java deleted file mode 100644 index fb29cd6..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/HandleException.java +++ /dev/null @@ -1,55 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - - -import static java.util.regex.Pattern.DOTALL; -import static java.util.regex.Pattern.compile; - -import java.util.regex.Pattern; - -/** - * @author alanrw - * - */ -public class HandleException { - private final Pattern pattern; - private ExceptionReplacement replacement; - private final boolean pruneStack; - - public HandleException( - io.github.taverna_extras.component.api.profile.doc.HandleException proxied) { - pruneStack = proxied.getPruneStack() != null; - pattern = compile(proxied.getPattern(), DOTALL); - if (proxied.getReplacement() != null) - replacement = new ExceptionReplacement(proxied.getReplacement()); - } - - public boolean matches(String s) { - return pattern.matcher(s).matches(); - } - - public boolean pruneStack() { - return pruneStack; - } - - public ExceptionReplacement getReplacement() { - return replacement; - } -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/PortProfile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/PortProfile.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/PortProfile.java deleted file mode 100644 index d89b571..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/PortProfile.java +++ /dev/null @@ -1,22 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -public interface PortProfile extends AnnotatedElement { -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/Profile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/Profile.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/Profile.java deleted file mode 100644 index c08ddc9..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/Profile.java +++ /dev/null @@ -1,65 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.util.List; -import java.util.Map; - -import io.github.taverna_extras.component.api.ComponentException; -import io.github.taverna_extras.component.api.NamedItem; -import io.github.taverna_extras.component.api.Registry; - -import org.apache.jena.ontology.OntModel; - -public interface Profile extends NamedItem, AnnotatedElement { - - Registry getComponentRegistry(); - - String getXML() throws ComponentException; - - io.github.taverna_extras.component.api.profile.doc.Profile getProfileDocument() - throws ComponentException; - - String getId(); - - String getOntologyLocation(String ontologyId); - - Map<String, String> getPrefixMap() throws ComponentException; - - OntModel getOntology(String ontologyId); - - List<PortProfile> getInputPortProfiles(); - - List<SemanticAnnotationProfile> getInputSemanticAnnotationProfiles() - throws ComponentException; - - List<PortProfile> getOutputPortProfiles(); - - List<SemanticAnnotationProfile> getOutputSemanticAnnotationProfiles() - throws ComponentException; - - List<ActivityProfile> getActivityProfiles(); - - List<SemanticAnnotationProfile> getActivitySemanticAnnotationProfiles() - throws ComponentException; - - ExceptionHandling getExceptionHandling(); - - void delete() throws ComponentException; -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-component/blob/b7b61e71/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/SemanticAnnotationProfile.java ---------------------------------------------------------------------- diff --git a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/SemanticAnnotationProfile.java b/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/SemanticAnnotationProfile.java deleted file mode 100644 index c7e040f..0000000 --- a/taverna-component-repository-api/src/main/java/org/apache/taverna/component/api/profile/SemanticAnnotationProfile.java +++ /dev/null @@ -1,72 +0,0 @@ -package io.github.taverna_extras.component.api.profile; -/* - * Licensed to the Apache Software Foundation (ASF) under one - * or more contributor license agreements. See the NOTICE file - * distributed with this work for additional information - * regarding copyright ownership. The ASF licenses this file - * to you under the Apache License, Version 2.0 (the - * "License"); you may not use this file except in compliance - * with the License. You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, - * software distributed under the License is distributed on an - * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY - * KIND, either express or implied. See the License for the - * specific language governing permissions and limitations - * under the License. - */ - -import java.util.List; - -import org.apache.jena.ontology.Individual; -import org.apache.jena.ontology.OntClass; -import org.apache.jena.ontology.OntModel; -import org.apache.jena.ontology.OntProperty; - -public interface SemanticAnnotationProfile { - - /** - * Returns the ontology that defines semantic annotation. - * - * @return the ontology that defines semantic annotation - */ - OntModel getOntology(); - - /** - * Returns the predicate for the semantic annotation. - * - * @return the predicate for the semantic annotation - */ - OntProperty getPredicate(); - - String getPredicateString(); - - String getClassString(); - - /** - * Returns the individual that the semantic annotation must use. - * - * May be null if no explicit individual is required. - * - * @return the individual that the semantic annotation must use - */ - Individual getIndividual(); - - /** - * Returns the individuals in the range of the predicate defined in the - * ontology. - * - * @return the individuals in the range of the predicate defined in the - * ontology - */ - List<Individual> getIndividuals(); - - Integer getMinOccurs(); - - Integer getMaxOccurs(); - - OntClass getRangeClass(); - -} \ No newline at end of file
