Add CWL components
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/repo Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/commit/ecc3b672 Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/tree/ecc3b672 Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/ecc3b672 Branch: refs/heads/cwlparser Commit: ecc3b6729c0dccfe0943475b3207c255b1bb3cb1 Parents: 4d32489 Author: Majdi Haouech <[email protected]> Authored: Mon Jun 4 10:33:03 2018 +0100 Committer: Majdi Haouech <[email protected]> Committed: Mon Jun 4 10:33:03 2018 +0100 ---------------------------------------------------------------------- .../scufl2/cwl/components/PortDetail.java | 62 ++++++++++++++ .../taverna/scufl2/cwl/components/Step.java | 85 ++++++++++++++++++++ .../scufl2/cwl/components/StepInput.java | 54 +++++++++++++ .../scufl2/cwl/components/StepOutput.java | 41 ++++++++++ 4 files changed, 242 insertions(+) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/ecc3b672/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java ---------------------------------------------------------------------- diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java new file mode 100644 index 0000000..563c76f --- /dev/null +++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/PortDetail.java @@ -0,0 +1,62 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +package org.apache.taverna.scufl2.cwl; + + +import java.util.ArrayList; + +public class PortDetail { + + + private String label; + + private int depth; + private String description; + private ArrayList<String> format; + public int getDepth() { + return depth; + } + public void setDepth(int depth) { + this.depth = depth; + } + public String getDescription() { + return description; + } + public void setDescription(String description) { + this.description = description; + } + public String getLabel() { + return label; + } + public void setLabel(String label) { + this.label = label; + } + public ArrayList<String> getFormat() { + return format; + } + public void setFormat(ArrayList<String> format) { + this.format = format; + } + + public void addFormat(String format){ + this.format.add(format); + } + +} \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/ecc3b672/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java ---------------------------------------------------------------------- diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java new file mode 100644 index 0000000..3f3d653 --- /dev/null +++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/Step.java @@ -0,0 +1,85 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +package org.apache.taverna.scufl2.cwl; + + +import java.util.ArrayList; +import java.util.Set; +import java.util.HashSet; + +public class Step { + + + private String id; + private String run; + + private Set<StepInput> inputs; + private Set<StepOutput> outputs; + + public Step() { + inputs = new HashSet<>(); + outputs = new HashSet<>(); + } + + public String getId() { + return id; + } + + public void setId(String id) { + this.id = id; + } + + public String getRun() { + return run; + } + + public void setRun(String run) { + this.run = run; + } + + public void addInput(String id, String source) { + inputs.add(new StepInput(id, source)); + } + + public void setInputs(Set<StepInput> inputs) { + this.inputs = inputs; + } + + public Set<StepInput> getInputs() { + return inputs; + } + + public void addOutput(String id) { + outputs.add(new StepOutput(id)); + } + + public void setOutputs(Set<StepOutput> outputs) { + this.outputs = outputs; + } + + public Set<StepOutput> getOutputs() { + return outputs; + } + + public String toString() { + return "Step " + id + ": run = " + run; + } + +} \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/ecc3b672/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepInput.java ---------------------------------------------------------------------- diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepInput.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepInput.java new file mode 100644 index 0000000..0432272 --- /dev/null +++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepInput.java @@ -0,0 +1,54 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +package org.apache.taverna.scufl2.cwl; + +import java.util.*; + +public class StepInput { + + private String id; + private String source; + + public StepInput() { + this.id = null; + this.source = null; + } + + public StepInput(String id, String source) { + this.id = id; + this.source = source; + } + + public void setId(String id) { + this.id = id; + } + + public String getId() { + return id; + } + + public void setSource(String source) { + this.source = source; + } + + public String getSource() { + return source; + } +} \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/ecc3b672/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepOutput.java ---------------------------------------------------------------------- diff --git a/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepOutput.java b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepOutput.java new file mode 100644 index 0000000..145fa2d --- /dev/null +++ b/taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/StepOutput.java @@ -0,0 +1,41 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ + +package org.apache.taverna.scufl2.cwl; + +public class StepOutput { + + private String id; + + public StepOutput() { + this.id = null; + } + + public StepOutput(String id) { + this.id = id; + } + + public void setId(String id) { + this.id = id; + } + + public String getId() { + return id; + } +} \ No newline at end of file
