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The "cTAKESParser" page has been changed by ChrisMattmann: https://wiki.apache.org/tika/cTAKESParser?action=diff&rev1=4&rev2=5 Comment: - finishing up the example You will need to place the CTAKESConfig.properties file in a classpath directory, e.g., org/apache/tika/parser/ctakes and include it on the classpath when calling the parser. Follow these steps: 1. `mkdir -p $HOME/src/ctakes-config/org/apache/tika/parser/ctakes && cd $HOME/src/ctakes-config/org/apache/tika/parser/ctakes` - 2. `curl -kO "https://issues.apache.org/jira/secure/attachment/12737116/CTAKESConfig.properties"' + 2. `curl -kO "https://issues.apache.org/jira/secure/attachment/12737116/CTAKESConfig.properties"` = Setting up the Tika Config file = @@ -94, +94 @@ To download and set up the custom Tika config, do the following. 1. `cd $HOME/src/ctakes-config` - 2. `curl kO "here|https://issues.apache.org/jira/secure/attachment/12737115/tika-config.xml"` + 2. `curl -kO "https://issues.apache.org/jira/secure/attachment/12737115/tika-config.xml"` = Putting it all together: Tika-App = - With all of the above information set and provided, you can call the cTAKESParser in Tika. Below is an example of how to use it on a downloaded PDF file from PubMed. You can find an example PDF file [[here|http://onlinelibrary.wiley.com/doi/10.1002/ajh.23615/epdf]]. + With all of the above information set and provided, you can call the cTAKESParser in Tika. Below is an example of how to use it on a downloaded PDF file from PubMed. You can find an example PDF file [[http://onlinelibrary.wiley.com/doi/10.1002/ajh.23615/epdf|here]]. The cTAKES parser can then be invoked from tika-app as follows: @@ -109, +109 @@ Which will produce (after much printing and output): {{{ - Content-Length: 457115 + Content-Length: 457115 Content-Type: application/pdf Creation-Date: 2013-11-20T13:24:11Z Last-Modified: 2013-11-22T14:13:25Z @@ -1362, +1362 @@ xmpTPg:NPages: 7 }}} + = Will this work from Tika Server? = + + Yes, it will! However it's a little tricky since cTAKES also includes its own version of Apache CXF and the jar version numbers are different than the version Tika Server uses, causing the classpath we generated before to fail (the one for tika-app). To obviate this, follow the below steps: + + First, generate a script that will build us a classpath from `$CTAKES_HOME/lib` that doesn't include the cxf jar files. This would look something like this: + + {{{ + #!/bin/bash + + CLASSPATH="" + for f in $(ls ${CTAKES_HOME}/lib/*.jar); do + if [[ $f != *"cxf"* ]]; then + CLASSPATH+=$f + CLASSPATH+=":" + fi + done + + echo $CLASSPATH + }}} + + Save this script as `gen-server-classpath.sh`. Then, start Tika-server like so: + + {{{ + java -classpath tika-server/target/tika-server-1.10-SNAPSHOT.jar:${CTAKES_HOME}/desc:${CTAKES_HOME}/resources::./config:`gen-server-classpath.sh` org.apache.tika.server.TikaServerCli --config tika-config.xml + }}} + + With Tika server started, let's post that biomedical PDF file to it and see what happens! + + {{{ + curl -T Vose-2013-American_Journal_of_Hematology.pdf -H "Content-Disposition: attachment;filename=Vose-2013-American_Journal_of_Hematology.pdf" http://localhost:9998/rmeta + }}} + + And the output should be: + + {{{ + [ + { + "Content-Type": "application/pdf", + "Creation-Date": "2013-11-20T13:24:11Z", + "Last-Modified": "2013-11-22T14:13:25Z", + "Last-Save-Date": "2013-11-22T14:13:25Z", + "WPS-ARTICLEDOI": "10.1002/ajh.23615", + "WPS-JOURNALDOI": "10.1002/(ISSN)1096-8652", + "WPS-PROCLEVEL": "2", + "X-Parsed-By": [ + "org.apache.tika.parser.CompositeParser", + "org.apache.tika.parser.ctakes.CTAKESParser", + "org.apache.tika.parser.DefaultParser", + "org.apache.tika.parser.pdf.PDFParser" + ], + "X-TIKA:content": "\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nJW-AJH#130002 1083..1088\n\n\nContinuing medical education activity\nin American Journal of Hematology\n\nCME Author: Julie M. Vose, M.D., M.B.A.\nCME Editor: Ayalew Tefferi, M.D.\n\nCME Information: Mantle Cell Lymphoma: 2013 Update on\nDiagnosis, Risk-Stratification andClinical Management\nIf you wish to receive credit for this activity, please refer\n\nto the website: www.wileyhealthlearning.com\n\nAccreditation and Designation Statement:\n\nBlackwell Futura Media Services is accredited by the\nAccreditation Council for Continuing Medical Education to\nprovide continuing medical education for physicians.\nBlackwell Futura Media Services designates this journal-\n\nbased CME for a maximum of 1 AMA PRA Category 1\nCreditTM. Physicians should only claim credit commensu-\nrate with the extent of their participation in the activity.\n\nEducational Objectives\n\nUpon completion of this educational activity, participants\nwill be better able to:\n1. Identify the histologic types and prognostic models\n\nused for mantle cell lymphoma\n2. Explain the different options for initial therapy for man-\n\ntle cell lymphoma\n3. Explain the different options for treatment of recurrent\n\nmantle cell lymphoma\n\nActivity Disclosures\n\nNo commercial support has been accepted related to the\ndevelopment or publication of this activity.\nAuthor: Julie M. Vose, M.D., M.B.A., discloses research\n\ngrant support from Allos Therapeautics/Spectrum, Bristol-\nMyers Squibb, Celgene, Genentech, GlaxoSmithKline, Incyte\nCorp., Janssen Biotech, Millennium, Onyx Pharmaceuticals,\nPharmacyclics, Sanofi-Aventis US, Inc., and US Biotest, Inc.\nCME Editor: Ayalew Tefferi, M.D. has no conflicts of\n\ninterest to disclose.\nThis activity underwent peer review in line with the stand-\n\nards of editorial integrity and publication ethics maintained\nby American Journal of Hematology. The peer reviewers\nhave no conflicts of interest to disclose. The peer review\nprocess for American Journal of Hematology is single\n\nblinded. As such, the identities of the reviewers are not dis-\nclosed in line with the standard accepted practices of medi-\ncal journal peer review.\nConflicts of interest have been identified and resolved in\n\naccordance with Blackwell Futura Media Services’s Policy\non Activity Disclosure and Conflict of Interest. The primary\nresolution method used was peer review and review by a\nnon-conflicted expert.\n\nInstructions on Receiving Credit\n\nThis activity is intended for physicians. For information\non applicability and acceptance of continuing medical edu-\ncation credit for this activity, please consult your professio-\nnal licensing board.\nThis activity is designed to be completed within one\n\nhour; physicians should claim only those credits that reflect\nthe time actually spent in the activity. To successfully earn\ncredit, participants must complete the activity during the\nvalid credit period, which is up to two years from initial pub-\nlication. Additionally, up to 3 attempts and a score of 70%\nor better is needed to pass the post test.\nFollow these steps to earn credit:\n\n� Log on to www.wileyhealthlearning.com\n� Read the target audience, educational objectives, and\nactivity disclosures.\n\n� Read the activity contents in print or online format.\n� Reflect on the activity contents.\n� Access the CME Exam, and choose the best answer\nto each question.\n\n� Complete the required evaluation component of the\nactivity.\n\n� Claim your Certificate.\nThis activity will be available for CME credit for twelve\n\nmonths following its launch date. At that time, it will be\nreviewed and potentially updated and extended for an addi-\ntional twelve months.\n\nVC 2013 Wiley Periodicals, Inc.\n\nAmerican Journal of Hematology http://wileyonlinelibrary.com/cgi-bin/jhome/351051082\n\n\n\n\n\nANNUAL CLINICAL UPDATES IN HEMATOLOGICAL MALIGNANCIES:\nA CONTINUING MEDICAL EDUCATION SERIES\n\nMantle cell lymphoma: 2013 Update on diagnosis,\nrisk-stratification, and clinical management\n\nJulie M. Vose*\n\nDisease Overview: Mantle cell lymphoma (MCL) is a non-Hodgkin lymphoma characterized by involvement\nof the lymph nodes, spleen, blood, and bone marrow with a short remission duration to standard therapies\nand a median overall survival of 4–5 years.\nDiagnosis: Diagnosis is based on lymph node, bone marrow, or tissue morphology of centrocytic lympho-\ncytes, small cell type, or blastoid variant cells. A chromosomal translocation t(11:14) is the molecular hall-\nmark of MCL, resulting in the overexpression of cyclin D1. Cyclin D1 is detected by immunohistochemistry\nin 98% of cases. The absence of SOX-11 or a low Ki-67 may correlate with a more indolent form of MCL.\nThe differential diagnosis of MCL includes small lymphocytic lymphoma, marginal zone lymphoma, and fol-\nlicular lymphoma.\nRisk Stratification: The Mantle Cell Lymphoma International Prognostic Index (MIPI) is the prognostic\nmodel most often used and incorporates ECOG performance status, age, leukocyte count, and lactic dehy-\ndrogenase. A modification of the MIPI also adds the Ki-67 proliferative index if available. The median over-\nall survival (OS) for the low risk group was not reached (5-year OS of 60%). The median OS for the\nintermediate risk group was 51 months and 29 months for the high risk group.\nRisk-Adapted Therapy: For selected indolent, low MIPI MCL patients, initial observation may be appropriate\ntherapy. For younger patients with intermediate or high risk MIPI MCL, aggressive therapy with a cytarabine\ncontaining regimen6 autologous stem cell transplantation should be considered. For older MCL patients\nwith intermediate or high risk MIPI, combination chemotherapy with R-CHOP, R-Bendamustine, or a clinical\ntrial should be considered. At the time of relapse, agents directed at activated pathways in MCL cells such\nas bortezomib (NFkB inhibitor) or lenalidamide (anti-angiogenesis) are approved agents. Clinical trials with\nIbruitinib (Bruton’s Tyrosine Kinase inhibitor) or Idelalisib (PI3K inhibitor) have demonstrated excellent clin-\nical activity in MCL patients. Autologous or allogeneic stem cell transplantation can also be considered in\nyoung patients. Am. J. Hematol. 88:1083–1088, 2013. VC 2013 Wiley Periodicals, Inc.\n\nDisease Overview\nMantle cell lymphoma (MCL) was originally identified in\n\nthe Kiel classification as a “centrocytic lymphoma” [1]. This\ntype of lymphoma was termed a lymphocytic lymphoma of\nintermediate differentiation by Berard and Dorfman [2]. A\ndistinct subtype of MCL was characterized by atypical small\nlymphoid cells with wide mantles around benign germinal\ncenters and was called a mantle zone lymphoma [3]. With\nthe advent of the revised European-American and the later\nWorld Health Organization classifications, MCL was made\na distinct lymphoma subtype and was termed an aggres-\nsive lymphoma [4,5]. MCL represents about 4% of all\nlymphomas in the US and 7–9% in Europe [6].\n\nPatients with MCL have a median age in their 60s and\nhave a striking male predominance (2:1). Patients generally\nhave stage III/IV disease and present with extensive lymph-\nadenopathy, blood and bone marrow involvement, and\nsplenomegaly [7]. Eighty percent of the patients with the\nmantle zone variant have splenomegaly which may be\nmassive. The MCL patients can present with pancytopenia\nor a leukemic presentation with extensive leukocytosis [8].\nSome degree of peripheral blood involvement can be\ndetected in most cases by flow cytometry [9]. Other extra-\nnodal sites include the gastrointestinal tract either in the\nstomach or colon, liver, or in Waldeyer’s ring [10]. Some\npatients have sheets of lymphomatous polyps of the large\nbowel, lymphomatous polyposis, which sometimes leads to\nthe diagnosis of MCL [11]. If random blind biopsies are\ndone of normal appearing mucosa of the colon in patients\n\nwho have been diagnosed with MCL in other locations, a\nlarge percentage are positive for MCL involvement [11].\nOther extranodal sites for MCL involvement include the\nskin, lacrimal glands, and central nervous system [10].\n\nDiagnosis\nThe diagnosis is made on a biopsy of a lymph node, tis-\n\nsue, bone marrow, or blood phenotype, which shows the\ntypical morphology of monomorphic small to medium sized\nlymphoid cells with irregular nuclear contours [5]. Four\ncytologic variants of MCL are recognized, including the\nsmall cell variant, mantle zone variant, diffuse variant, and\nthe blastic variant [12]. Immunophenotyping is commonly\nused with the MCL cells being CD201, CD51, and positive\nfor Cyclin D1, whereas being negative for CD10 and Bcl6\n[5]. The hallmark chromosomal translocation t(11:14)\n(q13;32) identifies MCL and can be shown in most cases\n\nDivision of Hematology/Oncology, University of Nebraska Medical Center,\nOmaha, Nebraska\n\nConflict of interest: Nothing to report.\n\n*Correspondence to: Julie M. Vose, Division of Hematology/Oncology, Uni-\nversity of Nebraska Medical Center, Omaha, NE 68198-7680. E-mail:\[email protected]\n\nReceived for publication 17 October 2013; Accepted 17 October 2013\n\nAm. J. Hematol. 88:1083–1088, 2013.\n\nPublished online in Wiley Online Library (wileyonlinelibrary.com).\nDOI: 10.1002/ajh.23615\n\nVC 2013 Wiley Periodicals, Inc.\n\nAmerican Journal of Hematology http://wileyonlinelibrary.com/cgi-bin/jhome/351051083\n\nAJH Educational Material\n\n\n\n[13]. This translocation leads to the aberrant expression of\ncyclin D1, which is not typically expressed in normal lym-\nphocytes. A few cyclin D1 negative cases have been identi-\nfied and appear to have an overexpression of cyclin D2 or\nD3 instead [14]. Recently, overexpression of the transcrip-\ntion factor, SOX11, has been described as a diagnostic\nmarker for MCL with the absence of SOX11 a characteristic\nof indolent MCL [15]. Biologic features such as a high Ki-\n67 proliferation index or p53 mutations and p16 deletions\nare closely related to the more aggressive MCL subtypes\nsuch as the blastoid variants [16]. A model of molecular\npathogenesis and progression of MCL has been proposed\nby Jares et al. (Fig. 1) [17].\n\nStaging procedures should include a complete blood\ncount, chemistry profile, a lactic dehydrogenase (LDH), a\nbone marrow evaluation, with immunophenotyping by flow\ncytometry of the bone marrow and blood, and computed\ntomography of the chest, abdomen, and pelvis. There are\nlimited studies in using FDG-PET scanning for MCL, but it\nis often clinically useful. The standard uptake values of\nsites involved with MCL often have low or intermediate val-\nues [18]. Evaluation of the gastrointestinal tract with endos-\ncopy is warranted if there are clinical symptoms or if a\ndose intense regimen will be used. Evaluation of the cere-\nbral spinal fluid is not usually done unless there are neuro-\nlogic symptoms or if the patient has the blastoid variant\n[19]. The majority of patients have stage III or IV disease\nafter complete staging is completed.\n\nRisk Stratification\nThe International Prognostic Index (IPI) was first devel-\n\noped for patients with diffuse large B-cell non-Hodgkin lym-\nphoma [20]. This was used for patients with MLC but was\nnot very discriminatory, particularly for the lower risk\npatients. More recently, the first prognostic index for MCL,\nthe Mantle cell International Prognostic Index (MIPI), was\nformulated by the European MCL Network [21]. The inde-\npendent prognostic factors for shorter overall survival from\nthe MIPI were higher age, worse ECOG performance\n\nstatus, higher LDH, and a higher white blood cell count at\ndiagnosis. These were calculated as a continuous parame-\nter and three groups emerged: MIPI low-risk with the\nmedian overall survival not reached (5-yr OS 60%), MIPI\nintermediate risk with a median OS of 51 months, and a\nMIPI high risk group with a median OS of 29 months (Fig.\n2)[21]. This index has now been validated by other groups\n[22] (Table I).\n\nA simplified modification of the MIPI has also been\ndeveloped, which has high concordance to the original\nMIPI, but slightly less discriminatory power [21]. The addi-\ntion of the Ki-67 proliferation index also provides some\nadditional discriminatory power [21] (Table II).\n\nFor each prognostic factor, 0 to 3 points are given and\nthe points are summed up to a maximum of 11. Patients\nwith 0–3 points are low risk, patients with 4–5 points are\nintermediate risk, and patients with 6–11 points are high\nrisk. These risk categories correspond to the categories of\nthe original MIPI [21].\n\nFigure 1. A proposed model of molecular pathogenesis and progression of MCL (Reproduced from Ref. 17, with permission from [Nat Rev Cancer]). [Color figure can\nbe viewed in the online issue, which is available at wileyonlinelibrary.com.]\n\nFigure 2. Overall survival for low, intermediate, and high risk MCL according to\nthe MIPI classification (Reproduced from Ref. 21], with permission from [Blood])\n\nannual clinical updates in hematological malignancies: a continuing medical education series\n\n1084 American Journal of Hematology\n\n\n\n\nGene expression profiling has been performed on a large\nseries of MCL patients to evaluate a molecular predictor\nconsisting of 20 proliferation associated genes [23]. How-\never, a microarray-based technique is not feasible on a\nwide scale. Therefore, further testing of a minimum number\nof genes by formalin-fixed, paraffin-embedded tissue speci-\nmens has been studied [24]. This study identified five\ngenes including RAN, MYC, TNFRSF10B, POLE2, and\nSLC29A2 which were validated by a quantitative reverse-\ntranscriptase polymerase chain reaction (qRT-PCR) based\ntest and predicted survival in 73 patients with MCL. Further\nvalidation of these genes and technique is needed before\nthis is used outside a research context.\n\nRisk-Adapted Therapy\nMCL is responsive to a variety of initial therapies, but rel-\n\natively short-term remissions are achieved with conven-\ntional chemotherapy regimens. The median duration of\nremission in most trials is 1.5–3 years, and the median OS\nis 3–6 years with standard chemotherapy. However, there\nis a wide variation in outcomes with some patients having a\nvery aggressive presentation and succumbing to their dis-\nease in a short period of time, while other patients at the\nopposite end of the spectrum have a very indolent clinical\ncourse. Because of the rarity of MCL, most trials have not\nbeen large randomized trials, and much of the available\ninformation is based on smaller phase II trials with histori-\ncal controls.\n\nInitial management of asymptomatic low MIPI or\nelderly MCL patients\n\nGiven the unfavorable prognosis and the fact that stand-\nard therapy does not appear to cure patients with MCL, a\n“watch and wait” strategy for patients with asymptomatic,\nlow MIPI or elderly MCL patients should be considered.\nThis strategy would be similar to that used for asymptom-\natic patients with follicular or other indolent lymphomas. In\na study from Weill-Cornell Medical Center, 97 patients with\nMCL were evaluated [25]. Of the 97, 31 (32%) were\nobserved at the time of initial evaluation. These MCL\npatients were 46% low-MIPI index when compared to 32%\nlow-MIPI in the patients who received initial treatment. The\nmedian time to treatment for the observation group was 12\nmonths (range 4 to 128 months) [25]. When this observa-\ntional patient group needed treatment, the majority received\ncyclophosphamide, doxorubicin, oncovin, and prednisone\n(CHOP)—like treatment (55%), with some patients receiv-\ning rituximab monotherapy (13%), and at the time of publi-\ncation five patients had never received any therapy [25].\n\nWhen the asymptomatic elderly MCL patient population\ndoes become symptomatic and requires therapy, a number\n\nof options are available for treatment. Probably, the most\ncommonly used regimen in the past has been an\nanthracycline-based therapy such as CHOP [26]. Rituximab\nmonotherapy has some modest activity in MCL [27]. More\nrecently, rituximab has been added to the drugs in CHOP\n(R-CHOP) and tested in MCL. The first report of R-CHOP\nfor the treatment of MCL was in 40 previously untreated\npatients and yielded an overall response rate (ORR) of\n96%, including a complete response (CR) of 48% [28].\nDespite 36% of the patients having a molecular CR, there\nwas no difference in the median progression-free survival\n(PFS) between the patients who achieved a molecular CR\n(16.5 months) and those who did not (18.8 months) [28].\nThere were similar results from a randomized study in the\nGerman lymphoma study group which compared front-line\nCHOP to R-CHOP. In this study, the addition of rituximab\nto CHOP improved the ORR (94% vs. 75%, P50.0054)\nand the CR rate (34% vs. 7%, P50.00024) [29]. However,\nthis did not translate into significant improvements in PFS\nor OS in this study [29].\n\nPurine analogues have also been used for the treatment\nof MCL in the older patient population. Single agent fludar-\nabine demonstrated an ORR< 40%; however, when com-\nbined with cyclophosphamide and rituximab the response\nrate is closer to 60% [30,31]. More recently, a large\nrandomized trial done in Germany demonstrated that\nR-CHOP was superior to R-FC in the older MCL patient\npopulation with a 4 year OS of 65% for R-CHOP and 50%\nfor R-FC (P5 0.0032) [32]. In addition, a second random-\nization was done for maintenance either with rituximab or\ninterferon. The arm that produced the best PFS and OS,\nwas R-CHOP followed by rituximab maintenance with a\n4-year OS of 87% [32]. This is the first large randomized\ntrial which demonstrated a benefit for rituximab mainte-\nnance in PFS for patients with MCL.\n\nAnother agent that has been tested in patients with MCL,\nwhich demonstrated good activity is Bendamustine. A\nrandomized trial done in Europe compared R-CHOP to\nR-Bendamustine in a number of different lymphomas [33].\nIn this trial, the patients with MCL had a similar ORR (89%\nfor BR and 95% for R-CHOP). The BR regimen was asso-\nciated with a lower progression rate 42% vs. 63% for the\nR-CHOP arm [33]. In addition, the hematologic toxicity and\nalopecia were less in the R-Bendamustine arm [33]. A sec-\nond study evaluating R-CHOP vs. R-Bendamustine did not\ndemonstrate a superior outcome for the R-Bendamustine\nbut did demonstrate an equivalent outcome [34]\nSome clinical studies are testing agents used in relapsed\nMCL in combinations in the front-line setting such as\nR-CHOP1Bortezomib [35].\nRecommendations: Asymptomatic elderly or low-\nMIPI patients can be observed without any therapy.\nWhen the patients become symptomatic, first line therapy\nchoices include R-CHOP (6 rituximab maintenance), R-\nBendamustine, or a clinical trial.\n\nInitial management of a young symptomatic patient\nSeveral studies have suggested that aggressive thera-\n\npies in younger patients with MCL may improve the out-\ncomes. One of the first studies to evaluate this was the\nEuropean MCL Network study where responding patients\nunder age 65 years were randomized after induction ther-\napy to receive either myeloablative radio-chemotherapy fol-\nlowed by autologous stem cell transplantation (ASCT) or\nmaintenance interferon [36]. In this study, the patients in\nthe ASCT arm had an improved PFS over those in the\ninterferon arm [36]. Several other single arm and retrospec-\ntive studies have suggested patients receiving an induction\nregimen that contains high-dose cytarabine, such as\n\nTABLE I. The Original MIPI Score Calculations\n\n[0.0335 3 age in (years)] 3 age (years)\n1 0.6978 (if ECOG performance status>1)\n1 1.367 3 log10 (LDH/ULN LDH)\n1 0.9393 3 log10 (white blood cells per 10\n\n6 L)\n\nTABLE II. Simplified MIPI Index\n\nPoints Age, years ECOG PS LDH/ULN LDH WBC, 109/L\n\n0 <50 0–1 < 0.67 <6.700\n1 50–59 – 0.67–0.99 6.700–9.999\n2 60–69 2–4 1.00–1.49 1.0–14.999\n3 �70 – �1.500 �15.000\n\nannual clinical updates in hematological malignancies: a continuing medical education series\n\nAmerican Journal of Hematology 1085\n\n\n\nhyperfractioned cyclophosphamide, vincristine, doxorubicin,\nand dexamethasone alternating with high-dose cytarabine\nand methotrexate (HyperCVAD 6rituximab) experience\nimproved survival [37–39].\n\nThe addition to rituximab to 6–8 cycles of HyperCVAD\nalternating with high dose cytarabine and methotrexate\nyielded a CR rate of 87% and had a 7-year failure-free sur-\nvival rate of 52% and OS of 68% [37]. This regimen was\ntested in a multicenter trial and was found to have a similar\nORR of 88% and CR rate of 58%; however, there was\ngrade IV hematologic toxicity in 87% of the patients making\nthis regimen difficult to give in some community settings\n[38]. It was also suggested in a retrospective study that\npatients receiving R-HyperCVAD as an induction with auto\nASCT in CR1 had an improved outcome as compared to\nR-CHOP [39]. However, a further analysis of a separate\ncohort of MCL patients demonstrated that when corrected\nfor the MIPI, the outcomes may be similar [40].\n\nBecause the R-HyperCVAD alternating with methotrex-\nate/cytarabine is difficult to administer, modifications which\ndrop the methotrexate portion [41] or drop both the metho-\ntrexate and cytarabine have been tested [42]. In the study\nfrom Geisler et al. [41], 160 younger MCL patients received\nrituximab1maxi-CHOP, alternating with rituximab1 cytara-\nbine. Responders received high-dose chemotherapy with\nASCT. The 6-year PFS was 66% and the OS was 70%.\nCompared to a historical control without the cytarabine, the\nresults were much improved with the regimen as outlined\n[41]. In a small pilot trial in an older population, the rituxi-\nmab–Hyper CVAD regimen without the methotrexate or\ncytarabine, but with maintenance rituximab demonstrated\nan ORR of 77% and a median PFS of 37 months [42].\nAnother approach has been for patients to receive R-\nCHOP X 3 cycles, then Rituximab, cisplatin, cytarabine,\ndexamethasone (R-DHAP) X 3, followed by high dose\nchemotherapy and autologous stem cell transplantation\n[43]. This study also demonstrated an excellent 5-year\noverall survival of 75% [43].\n\nThe role of autologous stem cell transplantation in CR1\nhas not been tested in a randomized trial. However in a ret-\nrospective analysis of 167 MCL patients under age 65, the\npatients received either R-HyperCVAD or R-CHOP followed\nby an auto ASCT in CR1 had an improved PFS compared\nto R-CHOP alone (P< 0.004), even when corrected for\nprognostic factors. [44]. The best induction regimen before\ntransplant has not been defined but is currently being eval-\nuated in clinical trials.\nRecommendations: For young symptomatic patients with\nMCL, considerations include R-HyperCVAD with high-dose\ncytarabine (6Methotrexate) followed by ASCT in CR1 for\nselected patients. For patients who are not candidates for\nstandard R-HyperCVAD with high dose cytarabine/metho-\ntrexate, possible alternatives include R-CHOP or\nR-Bendamustine. If possible, ASCT in CR1 should still be\nconsidered for these patients as well.\n\nManagement of relapse/refractory MCL\nFor patients with relapsed but asymptomatic MCL, fur-\n\nther “watch and wait” maybe possible as there are a per-\ncentage of patients with indolent MCL who may not need\ntherapy for months or years. Once the patient becomes\nsymptomatic many options are considerations. The Benda-\nmustine1 rituximab (BR) regimen has also been tested in\nrelapsed MCL patients. A phase II study of BR in 63\npatients with relapsed/refractory MCL demonstrated an\nORR or 90% with a CR of 60% and a median PFS of 30\nmonths [45].\n\nBecause many standard lymphoma salvage regimens\nhave limited activity in MCL, novel treatment approaches\n\nbased on targeting known signaling pathways have been\ntested. The first such agent to be tested as a proteasome\ninhibitor, bortezomib. As a monotherapy, bortezomib has\ndemonstrated ORRs in the 30–40% range [46]. In a large\nphase II study of 141 evaluable MCL patients treated with\nbortezomib, there was an ORR of 33% with a CR rate of\n8% [47]. With further follow up, the phase II study of borte-\nzomib demonstrated a median time to progression of 6.7\nmonths and a median OS of 23.5 months [48]. Bortezomib\nhas also been combined with other agents such as Benda-\nmustine and rituximab in the BVR regimen which also had\nexcellent activity. In patients with MCL, the ORR rate for\nthe BVR regimen was 71% [49].\n\nThe PI3Kinase/Akt/mTOR pathway is implicated in the\npathogenesis of MCL [50]. Based upon this information the\nmTOR inhibitor, temsirolimus was tested in a phase II study\nof patients with relapsed/refractory MCL. In this study, tem-\nsirolimus demonstrated moderate activity with an ORR of\n44% [51]. In a phase III study of 162 relapsed/refractory\npatients with MCL, high doses of temsirolimus (175 mg/75\nmg) resulted in an ORR of 22% and a PFS of 4.8 months\n[52]. Other mTOR inhibitors, such as everolimus, have also\ndemonstrated activity in MCL [53].\n\nThe immunomodulatory agent lenalidomide has also\nshown promising activity against MCL. In a phase II study,\nZinzani et al. [54] reported an ORR of 41% in 39 MCL\npatients treated with lenalidomide. The larger EMERGE\ntrial tested single agent lenalidomide in 134 patients with\nrelapsed MCL. The ORR was 28% with a 7.5% CR rate\n[55]. There studies led to the FDA approval of lenalidomide\nfor patients with relapsed MCL who had failed bortezomib.\nLenalidomide has also been combined with rituximab with\npromising results. In a study by Wang et al. [56], 52\npatients with recurrent MCL were treated with lenalidamide\nand rituximab for recurrent disease. In this study, the ORR\nwas 58% and the CR rate was 33% with the combination\nbeing well tolerated.\n\nOther agents that appear to have activity in MCL include\nthe brutons tyrosine kinase (BTK) inhibitor (PCI-32765,\nIbruitinib) and PI3Kinase inhibitor (GS-1101, Idelalisib)\nwhich target the B-cell receptor pathways. In a study of 51\nMCL patients, the BTK inhibitor was reported to have a\n69% ORR and a CR rate of 16%, with no differences\nbetween bortezomib na€ıve and patients who had relapsed\nafter receiving bortezomib [57]. Kahl et al. reported on 38\npatients with MCL who were treated with Idelalisib who\ndemonstrated a 48% ORR [58].\n\nThere is not much data available for standard involved\nfield irradiation in MCL. However, there is data with the use\nof radioimmunotherapy (RIT) with Yttrium 90—Ibritumomab\nTiuxetan in patients with relapsed MCL demonstrating an\nORR of 31% [59]. When RIT is used to consolidate after\nimmunochemotherapy, it resulted in improvement of the\npercentages of responses compared with historical controls\n[60].\n\nThe use of high-dose chemotherapy and ASCT for\npatients with relapsed MCL has not demonstrated as prom-\nising results as with front-line use. However, a resent analy-\nsis of the CIBMTR data demonstrated in 159 MCL patients\nreceiving an autologous transplant for relapsed disease,\nthe 5-year OS was 44% and for 99 patients receiving an\nallogeneic transplant for MCL, the 5-year OS was 32%\n[61]. In appropriate patients with relapsed MCL who had a\nlong initial remission and have been successfully salvaged,\nASCT in CR2 maybe a consideration. Allogeneic stem cell\ntransplantation is felt to be the only potentially curative\ntreatment for advanced MCL. A number of small studies\nusing various reduced intensity preparative regimens with\nan allogeneic source of stem cell have been reported\n\nannual clinical updates in hematological malignancies: a continuing medical education series\n\n1086 American Journal of Hematology\n\n\n\n[62,63]. In a study by Tam et al. [62], 35 patients with\nrelapsed MCL receiving a reduced intensity regimen with\nan allogeneic stem cell transplant. With a median follow up\nof 56 months, the 6-year PFS was 46% and the 6-year\nactuarial OS was 53% [62]. Although the relapse rates are\nless with allogeneic transplantation, the risks of graft-\nversus host disease and infectious complications are much\nhigher resulting in similar short term but apparently\nimproved long term results compared to autologous stem\ncell transplantation for relapsed MCL.\nRecommendations: My first choice for a relapsed MCL\npatient would be bendamustine/rituximab if the patient has\nnot previously received bendamustine. Other options would\ninclude a bortezomib containing regimen or lenalidamide. If\nthe patient is a candidate for stem cell transplantation, con-\nsideration for an autologous transplant if there was a long\nfirst remission or a reduced intensity allogeneic stem cell\ntransplant should be given. When clinically available, B-cell\nreceptor pathway inhibitors would be an excellent choice\nfor therapy as well.\n\nReferences\n1. Gerard-Marchant R, Hamlin I, Lennert K, et al. Classification of non-Hodgkin’s\n\nlymphomas [letter]. Lancet 1974;2:405–408.\n\n2. Berard CW, Dorfman RF. Histopathology of malignant lymphomas. Clin Hae-\nmatol 1974;3:39–45.\n\n3. Weisenburger DD, Kim H, Rappaport H. Mantle-zone lymphoma. A follicular\nvariant of intermediate lymphocytic lymphoma. Cancer 1982;49:1429–1434.\n\n4. Harris NL, Jaffe ES, Stein H, et al. A revised European-American classification\nof lymphoid neoplasms: A proposal from the International Lymphoma Study\nGroup. Blood 1994;84:1361–1392.\n\n5. Swerdlow SH, Campo E, Harris N, et al. WHO Classification of Tumors of the\nHaematopietic and Lymphoid Tissues. Lyon, France: IARC; 2008.\n\n6. Non-Hodgkin’s Lymphoma Classification project. A clinical evaluation of the\nInternational Lymphoma Study Group. Blood 1997;89:3909–3918.\n\n7. Tiemann M, Schrader C, Klapper W, et al. Histopathology, cell proliferation\nindices and clinical outcome in 304 patients with mantle cell lymphoma (MCL):\n\nA clinicopathological study from the European MCL Network. Br J Haematol\n2005;131:29–38.\n\n8. Ferrer A, Salaverria I, Bosch F, et al. Leukemic involvement is a common fea-\nture in mantle cell lymphoma. Cancer 2007;109:2473–2480.\n\n9. Ghielmini M, Zucca E. How I treat mantle cell lymphoma. Blood 2009;114:\n1469–1476.\n\n10. Samaha H, Dumontet C, Ketterer N, et al. Mantle cell lymphoma: A retrospec-\ntive study of 121 cases. Leukemia 1998;34:329–336.\n\n11. Romaguera JE, Medeiros LJ, Hagemeister FB, et al. Frequency of gastrointes-\ntinal involvement and its clinical significance in mantle cell lymphoma. Cancer\n2003;97:586–591.\n\n12. Bertoni R, Ponzoni M. The cellular origin of mantle cell lymphoma. Int J Bio-\nchem Cell Biol 2007;39:1747–1753.\n\n13. Bertoni F, Rinaldi A, Zucca E, Cavalli F. Update on the molecular biology of\nmantle cell lymphoma. Hematol Oncol 2006;24:22–27.\n\n14. Rosenwald A, Wright G, Wiestner A, et al. The proliferation gene expression\nsignature is a quantitative integrator of oncogenic events that predicts survival\nin mantle cell lymphoma. Cancer Cell 2003;3:185–197.\n\n15. Fernandez V, Salamero O, Espinet B, et al. Genomic and gene expression\nprofiling defines indolent forms of mantle cell lymphoma. Cancer Res 2010;70:\n1408–1418.\n\n16. Bernard M, Gressin R, Lefrere F, et al. Blastic variant of mantle cell lym-\nphoma: A rare but highly aggressive subtype. Leukemia 2001;15:1785–1791.\n\n17. Jares P, Colomer D, Campo E. Genetic and molecular pathogenesis of mantle\ncell lymphoma: Perspectives for new targeted therapeutics. Nat Rev Cancer\n2007;7:750–762.\n\n18. Gill S, Wolf M, Prince HM, et al. [18F] fluorodeoxyglucose positron emission\ntomography scanning for staging, response assessment, and disease surveil-\nlance in patients with mantle cell lymphoma. Clin Lymphoma Myeloma 2008;8:\n159–165.\n\n19. Ferrer A, Bosch F, Villamor N, et al. Central nervous system involvement in\nmantle cell lymphoma. Ann Onc 2008;19:135–141.\n\n20. International Non-Hodgkin’s Lymphoma Prognostic Factors Project. A predic-\ntive model for aggressive non-Hodgkin’s lymphoma. N Engl J Med 1993;329:\n987–994.\n\n21. Hoster E, Dreyling M, Klapper W, et al. A new prognostic index (MIPI) for\npatients with advanced mantle cell lymphoma. Blood 2008;111:558–565.\n\n22. Geisler CH, Kolstad A, Laurell A, et al. The mantle cell lymphoma International\n\nPrognostic Index (MIPI) is superior to the International Prognostic Index (IPI)\nin predicting survival following intensive first line immunochemotherapy and\nautologous stem cell transplantation (ASCT). Blood 2010;115:1530–1533.\n\n23. Rosenwald A, Wright G, Wiestner A, et al. The proliferation gene expression\nsignature is a quantitative integrator of oncogenic events that predicts survival\nin mantle cell lymphoma. Cancer Cell 2003;3:185–197.\n\n24. Hartmann E, Fernandez V, Moreno V, et al. Five-gene model to predict sur-\nvival in mantle-cell lymphoma using frozen or formalin-fixed, paraffin-embed-\nded tissue. J Clin Onc 2008;26:4966–4972.\n\n25. Martin P, Chadburn A, Christos P, et al. Outcome of deferred initial therapy in\n\nmantle-cell lymphoma. J Clin Onc 2009;27:1209–1213.\n\n26. Weisenburger DD, Vose JM, Greiner TC, et al. Mantle cell lymphoma: A clini-\ncopathologic study of 68 cases from the Nebraska Lymphoma Study Group.\nAm J Hematol 2000;64:190–196.\n\n27. Foran JM, Rohatiner AZ, Cunningham D, et al. European phase II study of rit-\nuximab (chimeric anti-CD20 monoclonal antibody) for patients with newly diag-\nnosed mantle-cell lymphoma and previously treated mantle-cell lymphoma,\nimmunocytoma, and small B-cell lymphocytic lymphoma. J Clin Onc 2000;18:\n317–324.\n\n28. Howard OM, Gribben JG, Neuberg DS, et al. Rituximab and CHOP induction\ntherapy for newly diagnosed mantle-cell lymphoma: Molecular complete\nresponses are not predictive of progression-free survival. J Clin Onc 2002;20:\n1288–1294.\n\n29. Lenz G, Dreyling M, Hoster E, et al. Immunochemotherapy with rituximab and\ncyclophosphamide, doxorubicin, vincristine, and prednisone significantly\nimproves response and time to treatment failure, but not long term outcome in\npatients with previously untreated mantle cell lymphoma: Results of a prospec-\ntive randomized trial of the German Low Grade Lymphoma Study Group\n(GLSG). J Clin Onc 2005;23:1984–1992.\n\n30. Foran JM, Rohatiner AZ, Coiffier B, et al. Multicenter phase II study of fludara-\nbine phosphate for patients with newly diagnosed lymphplasmacytoid lym-\nphoma, Waldenstrom’s macroglobulinemia, and mantle cell lymphoma. J Clin\nOncol 1999;17:546–553.\n\n31. Cohen BJ, Moskowitz C, Straus D, et al. Cyclophsphamide/fludarabine (CF) is\nactive in the treatment of mantle cell lymphoma. Leuk Lymphoma 2001;42:\n1015–1022.\n\n32. Kluin-Nelemans JC, Hoster E, Hermine O, et al. Treatment of older patients\n\nwith mantle cell lymphoma. NEJM 2012;376:520–531.\n\n33. Rummel M, Niederle N, Maschmeyer G, et al. Bendamustine plus rituximab\nversus CHOP plus rituximab as first-line treatment for patients with indolent\nand mantle-cell lymphomas: An open-label, muticentre, randomised, phase 3\nnon-inferiority trial. Lancet 2013;381:1203–1210.\n\n34. Flinn IW, Van der Jagt RH, Kahl BS, et al. An open-level, randomized study of\nbendamustine and rituximab (BR) compared with rituximab, cyclophospha-\nmide, vincristine, and prednisone (R-CVP) or rituximab, cyclophosphamide,\ndoxorubicin, vincristine, and prednisone (R-CHOP) in first-line treatment of\npatients with advanced indolent non-Hodgkin’s lymphoma (NHL) or mantle cell\n\nlymphoma (MCL): The Bright Study. Blood 2012;121:902a.\n\n35. Ruan J, Martin P, Furman RR, et al. Bortezomib plus CHOP-Rituximab for pre-\nviously untreated diffuse large B-cell lymphoma and mantle cell lymphoma.\nJ Clin Onc 2010;29:690–697.\n\n36. Dreyling M, Lenz G, Hoster E, et al. Early consolidation by myeloablative\nradiochemotherapy followed by autologous stem cell transplantation in first\nremission significantly prolongs progression-free survival in mantle cell lym-\nphoma: Results of a prospective randomized trial of the European MCL Net-\nwork. Blood 2005;105:2677–2684.\n\n37. Romaguera JE, Fayad L, Rodriguez MA, et al. High rate of durable remission\nafter treatment of newly diagnosed aggressive mantle-cell lymphoma with rit-\nuximab plus HyperCVAD Alternating with Rituximab plus high-dose methotrex-\nate and cytarabine. J Clin Onc 2005;23:7013–7023.\n\n38. Bernstein SH, Epner E, Unger JM, et al. A phase II multicenter trial of Hyper-\nCVAD MTX/Ara-C and rituximab in patients with previously untreated mantle\ncell lymphoma: SWOG 0213. Ann Onc 2013;24:1587–1593.\n\n39. Vose J, Loberiza F, Bierman P, et al. Mantle cell lymphoma (MCL): Induction\ntherapy with HyperCVAD/high dose methotrexate and cytarabine (MC) 1/2 rit-\nuximab improves results of autologous stem cell transplant in first remission.\nJ Clin Onc 2006;24:424a.\n\n40. Budde LE, Guthrie KA, Till GB, et al. Mantel cell lymphoma International Prog-\nnostic Index but not pretransplantation induction regimen predicts survival for\n\npatients with mantle-cell lymphoma receiving high-dose therapy and autolo-\ngous stem cell transplantation. J Clin Oncol 2011;29:3023–3029.\n\n41. Giesler CH, Kolstad A, Lurell A, et al. Long-term progression-free survival of\nmantle cell lymphoma after intensive front-line immunochemotherapy with in\nvivo-purged stem cell rescue: A non-randomized phase 2 multicenter study by\n\nthe Nordic Lymphoma Group. Blood 2008;112:2687–2693.\n\n42. Kahl BS, Longo WL, Eickhoff JC, et al. Maintenance rituximab following induc-\ntion chemoimmunotherapy may prolong progression-free survival in mantle\ncell lymphoma: A pilot study from the Wisconsin Oncology Network. Ann\nOncol 2006;17:1418–1423.\n\n43. Delarue R, Haioun C, Ribrag V, et al. CHOP and DHAP plus rituximab fol-\nlowed by autologous stem cell transplantation in mantle cell lymphoma: A\nphase 2 study from the Groupe d’Etude des Lymphomes de l’Adulte. Blood\n2013;121:48–53.\n\n44. LeCase AS, Vandergrift JL, Rodriguez MA, et al. Comparative outcome of ini-\ntial therapy for younger patients with mantle cell lymphoma: An analysis form\nthe NCCN NHL Database. Blood 2012;119:093–2099.\n\n45. Rummel M, Atta J, Welslau M. Bendamustine and rituximab (BR) are effective\nand has a favorable toxicity profile in the treatment of mantle cell and low-\ngrade non-Hodgkin’s lymphoma. J Clin Onc 2005;23:3383–3389.\n\nannual clinical updates in hematological malignancies: a continuing medical education series\n\nAmerican Journal of Hematology 1087\n\n\n\n46. O’Connor OA, Wright J, Moskowitz C, et al. Phase II clinical experience with the\nnovel proteasome inhibitor bortezomib in patients with indolent non-Hodgkin’s\nlymphoma and mantle cell lymphoma. J Clin Oncol 2005;23:676–684.\n\n47. Fisher RI, Bernstein SH, Kahl BS, et al. Multicenter phase II study of bortezo-\nmib in patients with relapsed or refractory mantle cell lymphoma. J Clin Oncol\n2006;24:4867–4874.\n\n48. Goy A, Bernstein SH, Kahl BS, et al. Bortezomib in patients with relapsed or\nrefractory mantle cell lymphoma: Updated time-to-event analyses of the multi-\ncenter phase 2 PINNACLE study. Ann Onc 2009;20:520–525.\n\n49. Friedberg JW, Vose JM, Kelly JL, et al. The combination of bendamustine, bor-\ntezomib, and rituximab for patients with relapsed/refractory indolent and man-\ntle cell lymphoma. Blood 2011;117:2807–2812.\n\n50. Perez-Galan P, Dreyling M, Wiestner A. Mantle cell lymphoma: Biology, patho-\ngenesis, and the molecular basis of treatment in the genomic era. Blood 2011;\n117:26–38.\n\n51. Ansell SM, Inwards DJ, Rowland KM, et al. Low-dose single-agent temsiroli-\nmus for relapsed mantle cell lymphoma: A phase 2 trial in the North Central\nCancer Treatment Group. Cancer 2008;113:508–514.\n\n52. Hess G, Herbrecht R, Romaguera J, et al. Phase III study to evaluate temsiro-\nlimus compared with investigator’s choice therapy for the treatment of relapsed\nor refractory mantle cell lymphoma. J Clin Oncol 2009;27:3822–3829.\n\n53. Witzig TE, Reeder CB, LaPlant BR, et al. A phase II trial of the oral mTOR\ninhibitor everoliumus in relapsed aggressive lymphoma. Leukemia 2011;25:\n341–347.\n\n54. Zinzani PL, Witzig TE, Vose J, et al. Confirmation of the efficacy and safety of lenali-\ndomide oral monotherapy in patients with relapsed or refractory mantle cell lym-\nphoma: Results of an international study (NHL-003). Blood 2008;112:262–267.\n\n55. Goy A, Sinha R, Williams ME, et al. Single-agent lenalidomide in patients\nwith mangle-cell lymphoma who relapsed or progressed after or were\nrefractory to bortezomib: Phase II MCL-001 (EMERGE) Study. J Clin Onc\n2013;49:2835.\n\n56. Wang M, Fayad L, Wagner-Bartak N, et al. Lenalidamide in combination with\nrituximab for patients with relapsed or refractory mantle-cell lymphoma: A\n\nphase 1/2 clinical trial. Lancet Oncol 2012;13:716–723.\n57. Wang L, Rule S, Martin P, et al. Targeting BTK with Ibruitinib in relapsed or\n\nrefractory mantle cell lymphoma. NEJM 2013;369:507–516.\n58. Kahl B, Byrd J, Flinn I, et al. Significant clinical activity of CAL-101, an isoform\n\nselective inhibitor of phosphatidylinositol 3 kinase P110D, in patients with relapsed\nor refractory indolent and mantle cell lymphoma. Ann Onc 2011;22:350a.\n\n59. Wang M, Oki Y, Pro B, et al. Phase II study of Yttrium-90 Ibritumomab tiuxetan\nin patients with relapsed or refractory mantle cell lymphoma. J Clin Oncol\n2009;27:5213–5218.\n\n60. Smith MR, Linjun A, Gordon LI, et al. Phase II study of rituximab plus cyclophos-\nphamide, doxorubicin, vincristine, and prednisone immunochemotherapy fol-\nlowed by 90Y-Ibritumomab tiuxetan in untreated mantle cell lymphoma: Eastern\nCooperative Oncology Group Study E1499. J Clin Oncol 2012;30:3119–3126.\n\n61. Fenske TS, Carreras J, Zhang M, et al. Outcome of patients with mantle cell\nlymphoma undergoing autologous versus reduced-intensity allogeneic trans-\nplantation. Ann Onc 2011;22:18a.\n\n62. Tam CS, Bassett R, Ledesma C, et al. Mature results of the M. D. Anderson\nCancer Center risk-adapted transplantation strategy in mantle cell lymphoma.\n\nBlood 2009;113:4144–4152.\n63. Maris MB, Sandmaier M, Storer FE, et al. Allogeneic hematopoietic cell trans-\n\nplantation after fludarabine and 2 Gy total body irradiation for relapsed and\nrefractory mantle cell lymphoma. 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"MCL:14182:14185:C0334634,C0334634,C0334634,C0334634", + "MCL:14265:14268:C0334634,C0334634,C0334634,C0334634", + "follicular or other indolent lymphomas:14375:14413:C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301,C0024301", + "lymphomas:14404:14413:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:15117:15120:C0334634,C0334634,C0334634,C0334634", + "MCL:15392:15395:C0334634,C0334634,C0334634,C0334634", + "MCL:15484:15487:C0334634,C0334634,C0334634,C0334634", + "MCL:15536:15539:C0334634,C0334634,C0334634,C0334634", + "progression:15764:15775:C0242656", + "lymphoma:15962:15970:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:16307:16310:C0334634,C0334634,C0334634,C0334634", + "MCL:16612:16615:C0334634,C0334634,C0334634,C0334634", + "MCL:17038:17041:C0334634,C0334634,C0334634,C0334634", + "MCL:17094:17097:C0334634,C0334634,C0334634,C0334634", + "lymphomas:17239:17248:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:17287:17290:C0334634,C0334634,C0334634,C0334634", + "progression:17385:17396:C0242656", + "toxicity:17467:17475:C0600688,C0600688", + "MCL:18191:18194:C0334634,C0334634,C0334634,C0334634", + "MCL:18280:18283:C0334634,C0334634,C0334634,C0334634", + "hematological malignancies:19184:19210:C0376545,C0376545,C0376545", + "malignancies:19198:19210:C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C1306459,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826", + "toxicity:19824:19832:C0600688,C0600688", + "MCL:20146:20149:C0334634,C0334634,C0334634,C0334634", + "MCL:20505:20508:C0334634,C0334634,C0334634,C0334634", + "MCL:21450:21453:C0334634,C0334634,C0334634,C0334634", + "relapse:22208:22215:C0277556", + "relapsed:22248:22256:C0277556", + "MCL:22274:22277:C0334634,C0334634,C0334634,C0334634", + "MCL:22373:22376:C0334634,C0334634,C0334634,C0334634", + "MCL:22565:22568:C0334634,C0334634,C0334634,C0334634", + "relapsed:22621:22629:C0277556", + "MCL:22641:22644:C0334634,C0334634,C0334634,C0334634", + "lymphoma:22744:22752:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:22794:22797:C0334634,C0334634,C0334634,C0334634", + "MCL:23076:23079:C0334634,C0334634,C0334634,C0334634", + "progression:23251:23262:C0242656", + "MCL:23470:23473:C0334634,C0334634,C0334634,C0334634", + "MCL:23587:23590:C0334634,C0334634,C0334634,C0334634", + "relapsed:23704:23712:C0277556", + "MCL:23724:23727:C0334634,C0334634,C0334634,C0334634", + "tem:23744:23747:C0276640", + "relapsed:23841:23849:C0277556", + "MCL:23874:23877:C0334634,C0334634,C0334634,C0334634", + "MCL:24052:24055:C0334634,C0334634,C0334634,C0334634", + "MCL:24142:24145:C0334634,C0334634,C0334634,C0334634", + "MCL:24340:24343:C0334634,C0334634,C0334634,C0334634", + "relapsed:24457:24465:C0277556", + "MCL:24466:24469:C0334634,C0334634,C0334634,C0334634", + "MCL:24628:24631:C0334634,C0334634,C0334634,C0334634", + "recurrent disease:24680:24697:C0277556", + "disease:24690:24697:C0012634", + "MCL:24839:24842:C0334634,C0334634,C0334634,C0334634", + "MCL:25252:25255:C0334634,C0334634,C0334634,C0334634", + "MCL:25395:25398:C0334634,C0334634,C0334634,C0334634", + "relapsed:25516:25524:C0277556", + "MCL:25525:25528:C0334634,C0334634,C0334634,C0334634", + "relapsed:25775:25783:C0277556", + "MCL:25784:25787:C0334634,C0334634,C0334634,C0334634", + "prom:25812:25816:C0015944,C0015944,C0015944,C0015944,C0015944,C0015944,C0015944,C0015944", + "MCL:25922:25925:C0334634,C0334634,C0334634,C0334634", + "relapsed disease:25973:25989:C0277556", + "relapsed:25973:25981:C0277556", + "disease:25982:25989:C0012634", + "MCL:26070:26073:C0334634,C0334634,C0334634,C0334634", + "relapsed:26131:26139:C0277556", + "MCL:26140:26143:C0334634,C0334634,C0334634,C0334634", + "MCL:26349:26352:C0334634,C0334634,C0334634,C0334634", + "hematological malignancies:26515:26541:C0376545,C0376545,C0376545", + "malignancies:26529:26541:C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826", + "MCL:26680:26683:C0334634,C0334634,C0334634,C0334634", + "relapse:26876:26883:C0277556", + "graft-versus host disease:26944:26969:C0018133,C0018133", + "disease:26962:26969:C0012634", + "infectious:26974:26984:C0009450,C0009450,C0009450,C0009450,C0009450,C0009450,C0009450", + "complications:26985:26998:C0009566,C0009566", + "relapsed:27139:27147:C0277556", + "MCL:27148:27151:C0334634,C0334634,C0334634,C0334634", + "relapsed:27191:27199:C0277556", + "malignant lymphomas:27871:27890:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphomas:27881:27890:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Mantle-zone lymphoma:27960:27980:C0334634,C0334634,C0555202,C0334634,C0555202,C0334634", + "lymphoma:27972:27980:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphocytic lymphoma:28018:28038:C0855095,C0023434,C0023434,C0023434,C0023434,C0855095,C0855095", + "lymphoma:28030:28038:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Cancer:28040:28046:C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826", + "ES:28085:28087:C0553580", + "lymphoid neoplasms:28150:28168:C0598798", + "neoplasms:28159:28168:C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651", + "Lymphoma:28204:28212:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Tumors:28313:28319:C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651,C0027651", + "Non-Hodgkin’s Lymphoma:28390:28412:C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305", + "Lymphoma:28404:28412:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Lymphoma:28479:28487:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:28653:28673:C0334634,C0334634,C0334634,C0334634", + "lymphoma:28665:28673:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:28675:28678:C0334634,C0334634,C0334634,C0334634", + "MCL:28726:28729:C0334634,C0334634,C0334634,C0334634", + "mantle cell lymphoma:28855:28875:C0334634,C0334634,C0334634,C0334634", + "lymphoma:28867:28875:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Cancer:28877:28883:C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C1306459,C1306459,C0006826", + "mantle cell lymphoma:28940:28960:C0334634,C0334634,C0334634,C0334634", + "lymphoma:28952:28960:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Mantle cell lymphoma:29032:29052:C0334634,C0334634,C0334634,C0334634", + "lymphoma:29044:29052:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Leukemia:29091:29099:C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418", + "mantle cell lymphoma:29246:29266:C0334634,C0334634,C0334634,C0334634", + "lymphoma:29258:29266:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:29339:29359:C0334634,C0334634,C0334634,C0334634", + "lymphoma:29351:29359:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphoma:29496:29504:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "proliferation:29584:29597:C0334094", + "mantle cell lymphoma:29697:29717:C0334634,C0334634,C0334634,C0334634", + "lymphoma:29709:29717:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Cancer:29719:29725:C0006826,C1306459,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826", + "mantle cell lymphoma:29856:29876:C0334634,C0334634,C0334634,C0334634", + "lymphoma:29868:29876:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Cancer:29878:29884:C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826", + "Leukemia:30031:30039:C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418,C0023418", + "pathogenesis:30113:30125:C0699748,C0699748", + "lymphoma:30140:30148:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "disease:30361:30368:C0012634", + "mantle cell lymphoma:30400:30420:C0334634,C0334634,C0334634,C0334634", + "lymphoma:30412:30420:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Lymphoma:30427:30435:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Myeloma:30436:30443:C0026764,C0026764,C0026764,C0026764", + "lymphoma:30550:30558:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Non-Hodgkin’s Lymphoma:30602:30624:C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305", + "Lymphoma:30616:30624:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphoma:30702:30710:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:30842:30862:C0334634,C0334634,C0334634,C0334634", + "lymphoma:30854:30862:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:30936:30956:C0334634,C0334634,C0334634,C0334634", + "lymphoma:30948:30956:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "proliferation:31245:31258:C0334094", + "mantle cell lymphoma:31358:31378:C0334634,C0334634,C0334634,C0334634", + "lymphoma:31370:31378:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Cancer:31380:31386:C0006826,C0006826,C1306459,C0006826,C0006826,C1306459,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C0006826,C1306459,C0006826,C0006826", + "mantle-cell lymphoma:31493:31513:C0334634,C0334634,C0334634,C0334634", + "lymphoma:31505:31513:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphoma:31697:31705:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Mantle cell lymphoma:31785:31805:C0334634,C0334634,C0334634,C0334634", + "lymphoma:31797:31805:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Lymphoma:31864:31872:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle-cell lymphoma:32077:32097:C0334634,C0334634,C0334634,C0334634", + "lymphoma:32089:32097:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle-cell lymphoma:32121:32141:C0334634,C0334634,C0334634,C0334634", + "lymphoma:32133:32141:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "immunocytoma:32142:32154:C0242647,C0334633,C0242647,C0334633,C0242647", + "small B-cell lymphocytic lymphoma:32160:32193:C0855095,C0023434,C0855095,C0023434,C0855095,C0023434,C0023434", + "B-cell lymphocytic lymphoma:32166:32193:C0079731,C0079731,C0079731", + "lymphocytic lymphoma:32173:32193:C0023434,C0855095,C0855095,C0023434,C0023434,C0855095,C0023434", + "lymphoma:32185:32193:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphoma:32336:32344:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "progression:32396:32407:C0242656", + "mantle cell lymphoma:32714:32734:C0334634,C0334634,C0334634,C0334634", + "lymphoma:32726:32734:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Lymphoma:32803:32811:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "macroglobulinemia:33037:33054:C0024419,C0024419,C0024419,C0024419,C0024419,C0024419,C0024419,C0024419", + "mantle cell lymphoma:33060:33080:C0334634,C0334634,C0334634,C0334634", + "lymphoma:33072:33080:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "CF:33183:33185:C0010674,C0010674,C0010674,C0010674", + "mantle cell lymphoma:33216:33236:C0334634,C0334634,C0334634,C0334634", + "lymphoma:33228:33236:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Lymphoma:33243:33251:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:33353:33373:C0334634,C0334634,C0334634,C0334634", + "lymphoma:33365:33373:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle-cell lymphomas:33552:33573:C0334634,C0334634,C0334634,C0334634", + "lymphomas:33564:33573:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "non-Hodgkin’s lymphoma:34002:34024:C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305", + "lymphoma:34016:34024:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "NHL:34026:34029:C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305,C0024305", + "MCL:34055:34058:C0334634,C0334634,C0334634,C0334634", + "diffuse large B-cell lymphoma:34196:34225:C0079734,C0079734,C0079734,C0079734,C0079734,C0079734,C0079734,C0079744,C0079734,C0079744", + "large B-cell lymphoma:34204:34225:C0024302,C0024302,C0079744,C0024302,C0079744,C0024302,C0024302,C0024302,C0024302,C0024302,C0024302,C0024302", + "B-cell lymphoma:34210:34225:C0079731,C0079731,C0079731", + "lymphoma:34217:34225:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle cell lymphoma:34230:34250:C0334634,C0334634,C0334634,C0334634", + "lymphoma:34242:34250:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "progression:34463:34474:C0242656", + "MCL:34573:34576:C0334634,C0334634,C0334634,C0334634", + "mantle-cell lymphoma:34736:34756:C0334634,C0334634,C0334634,C0334634", + "lymphoma:34748:34756:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "lymphoma:35049:35057:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "Mantle cell lymphoma:35138:35158:C0334634,C0334634,C0334634,C0334634", + "lymphoma:35150:35158:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "MCL:35160:35163:C0334634,C0334634,C0334634,C0334634", + "lymphoma:35405:35413:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "mantle-cell lymphoma:35526:35546:C0334634,C0334634,C0334634,C0334634", + "lymphoma:35538:35546:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + "progression:35703:35714:C0242656", + "lymphoma:35743:35751:C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299,C0024299", + 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"M:30765:30766:C0024554,C0024554,C0024554,C0024554", + "diag:32066:32070:C0011900", + "M:32473:32474:C0024554,C0024554,C0024554,C0024554", + "M:33408:33409:C0024554,C0024554,C0024554,C0024554", + "Bright:34065:34071:C0423899,C0423899,C0423899,C0423899,C0423899", + "M:34291:34292:C0024554,C0024554,C0024554,C0024554", + "work:34581:34585:C0043227", + "ate:34840:34843:C0013470,C0013470", + "F:35117:35118:C0015780,C0015780,C0015780,C0015780", + "remission:35317:35326:C0544452,C0544452,C0544452", + "M:36623:36624:C0024554,C0024554,C0024554,C0024554", + "education:36902:36911:C0013658,C0424927,C0013658,C0013658,C0013658,C0013658,C0013658,C0013658", + "M:37800:37801:C0024554,C0024554,C0024554,C0024554", + "M:39006:39007:C0024554,C0024554,C0024554,C0024554", + "M:39591:39592:C0024554,C0024554,C0024554,C0024554", + "M:40094:40095:C0024554,C0024554,C0024554,C0024554", + "M:40447:40448:C0024554,C0024554,C0024554,C0024554", + "education:40715:40724:C0013658,C0013658,C0013658,C0013658,C0013658,C0424927,C0013658,C0013658" + ], + "ctakes:schema": "coveredText:start:end:ontologyConceptArr", + "date": "2013-11-22T14:13:25Z", + "dc:format": "application/pdf; version=1.5", + "dc:title": "JW-AJH#130002 1083..1088", + "dcterms:created": "2013-11-20T13:24:11Z", + "dcterms:modified": "2013-11-22T14:13:25Z", + "meta:creation-date": "2013-11-20T13:24:11Z", + "meta:save-date": "2013-11-22T14:13:25Z", + "modified": "2013-11-22T14:13:25Z", + "pdf:PDFVersion": "1.5", + "pdf:encrypted": "false", + "producer": "PDFlib PLOP 2.0.0p6 (SunOS)/Adobe LiveCycle PDFG ES", + "resourceName": "Vose-2013-American_Journal_of_Hematology.pdf", + "title": "JW-AJH#130002 1083..1088", + "xmp:CreatorTool": "Arbortext Advanced Print Publisher 9.0.114/W", + "xmpTPg:NPages": "7" + } + ] + }}} +
