Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-1.txt URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-1.txt?rev=1722027&view=auto ============================================================================== --- tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-1.txt (added) +++ tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-1.txt Mon Dec 28 23:10:16 2015 @@ -0,0 +1,165 @@ +"Source Name" "Characteristics[organism]" "Term Source REF" "Term Accession Number" "Characteristics[strain]" "Term Source REF" "Term Accession Number" "Characteristics[genotype]" "Term Source REF" "Term Accession Number" "Protocol REF" "Sample Name" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession 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"0.07" "l/hour" "" "" +"culture1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.07-aliquot8" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.07" "l/hour" "" "" +"culture1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.07-aliquot9" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.07" "l/hour" "" "" +"culture1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.07-aliquot10" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.07" "l/hour" "" "" +"culture2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 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"l/hour" "" "" +"culture2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.1-aliquot5" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.1" "l/hour" "" "" +"culture2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.1-aliquot6" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.1" "l/hour" "" "" +"culture2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.1-aliquot7" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.1" "l/hour" "" "" +"culture2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 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"l/hour" "" "" +"culture3" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.2-aliquot1" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.2" "l/hour" "" "" +"culture3" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.2-aliquot2" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.2" "l/hour" "" "" +"culture3" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "C-0.2-aliquot3" "carbon" "EFO" "http://purl.obolibrary.org/obo/CHEBI_27594"; "0.2" "l/hour" "" "" +"culture3" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 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"N-0.1-aliquot6" "nitrogen" "" "" "0.1" "l/hour" "" "" +"culture5" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "N-0.1-aliquot7" "nitrogen" "" "" "0.1" "l/hour" "" "" +"culture5" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "N-0.1-aliquot8" "nitrogen" "" "" "0.1" "l/hour" "" "" +"culture5" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "N-0.1-aliquot9" "nitrogen" "" "" "0.1" "l/hour" "" "" +"culture5" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "N-0.1-aliquot10" "nitrogen" "" "" "0.1" 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"KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.1-aliquot11" "sulfur" "" "" "0.1" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot1" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot2" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot3" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot4" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot5" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot6" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot7" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot8" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot9" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot10" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture12" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "S-0.2-aliquot11" "sulfur" "" "" "0.2" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot1" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot2" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot3" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot4" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot5" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture13" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.07-aliquot6" "ethanol" "" "" "0.07" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot1" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot2" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot3" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot4" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot5" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture14" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.1-aliquot6" "ethanol" "" "" "0.1" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot1" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot2" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot3" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot4" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot5" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture15" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "E-0.2-aliquot6" "ethanol" "" "" "0.2" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot1" "glucose" "" "" "0.07" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot2" "glucose" "" "" "0.07" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot3" "glucose" "" "" "0.07" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot4" "glucose" "" "" "0.07" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot5" "glucose" "" "" "0.07" "l/hour" "" "" +"culture16" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.07-aliquot6" "glucose" "" "" "0.07" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot1" "glucose" "" "" "0.1" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot2" "glucose" "" "" "0.1" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot3" "glucose" "" "" "0.1" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot4" "glucose" "" "" "0.1" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot5" "glucose" "" "" "0.1" "l/hour" "" "" +"culture17" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.1-aliquot6" "glucose" "" "" "0.1" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot1" "glucose" "" "" "0.2" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot2" "glucose" "" "" "0.2" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot3" "glucose" "" "" "0.2" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot4" "glucose" "" "" "0.2" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot5" "glucose" "" "" "0.2" "l/hour" "" "" +"culture18" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "growth protocol" "G-0.2-aliquot6" "glucose" "" "" "0.2" "l/hour" "" ""
Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-2.txt URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-2.txt?rev=1722027&view=auto ============================================================================== --- tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-2.txt (added) +++ tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testISATab_BII-I-1/s_BII-S-2.txt Mon Dec 28 23:10:16 2015 @@ -0,0 +1,15 @@ +"Source Name" "Characteristics[organism]" "Term Source REF" "Term Accession Number" "Characteristics[strain]" "Term Source REF" "Term Accession Number" "Characteristics[genotype]" "Term Source REF" "Term Accession Number" "Characteristics[mating type]" "Term Source REF" "Term Accession Number" "Protocol REF" "Sample Name" "Factor Value[dose]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[exposure time]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[compound]" "Term Source REF" "Term Accession Number" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_0hrs_Grow1_Sample_1" "0" "ng /ml" "" "" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_1hrs_Grow1_Drug_Sample_1" "200" "ng /ml" "" "" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_2hrs_Grow1_Drug_Sample_1" "200" "ng /ml" "" "" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_4hrs_Grow1_Drug_Sample_1" "200" "ng /ml" "" "" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_2hrs_Grow1_Vehicle_Sample_1" "0" "ng /ml" "" "" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_4hrs_Grow1_Vehicle_Sample_1" "0" "ng /ml" "" "" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" +"NZ_0hrs_Grow_1" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_1hrs_Grow1_Vehicle_Sample_1" "0" "ng /ml" "" "" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_0hrs_Grow2_Sample_2" "0" "ng /ml" "" "" "0" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_1hrs_Grow2_Drug_Sample_2" "200" "ng /ml" "" "" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_4hrs_Grow2_Drug_Sample_2" "200" "ng /ml" "" "" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_2hrs_Grow2_Drug_Sample_2" "200" "ng /ml" "" "" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "rapamycin" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_1hrs_Grow2_Vehicle_Sample_2" "0" "ng /ml" "" "" "1" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_2hrs_Grow2_Vehicle_Sample_2" "0" "ng /ml" "" "" "2" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" +"NZ_0hrs_Grow_2" "Saccharomyces cerevisiae (Baker's yeast)" "" "" "FY1679" "" "" "KanMx4 MATa/MATalpha ura3-52/ura3-52 leu2-1/+trp1-63/+his3-D200/+ hoD KanMx4/hoD" "" "" "mating type alpha" "EFO" "http://www.ebi.ac.uk/efo/EFO_0001270"; "growth protocol" "NZ_4hrs_Grow2_Vehicle_Sample_2" "0" "ng /ml" "" "" "4" "hour" "UO" "http://purl.obolibrary.org/obo/UO_0000032"; "drug vehicle (90% ethanol/10% tween-20)" "" "" Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR.jar URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR.jar?rev=1722027&view=auto ============================================================================== Binary file - no diff available. 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Propchange: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR_with_HTML.jar ------------------------------------------------------------------------------ svn:mime-type = application/octet-stream Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR_with_PEHDR.jar URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR_with_PEHDR.jar?rev=1722027&view=auto ============================================================================== Binary file - no diff available. Propchange: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAR_with_PEHDR.jar ------------------------------------------------------------------------------ svn:mime-type = application/octet-stream Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVA.java URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVA.java?rev=1722027&view=auto ============================================================================== --- tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVA.java (added) +++ tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVA.java Mon Dec 28 23:10:16 2015 @@ -0,0 +1,14 @@ +/************************************************************************* + * Compilation: javac HelloWorld.java + * Execution: java HelloWorld + * + * Prints "Hello, World". By tradition, this is everyone's first program. + * + *************************************************************************/ + +public class HelloWorld { + public static void main(String[] args) { + System.out.println("Hello, World"); + } + +} \ No newline at end of file Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVAPROPS.properties URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVAPROPS.properties?rev=1722027&view=auto ============================================================================== --- tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVAPROPS.properties (added) +++ tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJAVAPROPS.properties Mon Dec 28 23:10:16 2015 @@ -0,0 +1,22 @@ +# Licensed to the Apache Software Foundation (ASF) under one or more +# contributor license agreements. See the NOTICE file distributed with +# this work for additional information regarding copyright ownership. +# The ASF licenses this file to You under the Apache License, Version 2.0 +# (the "License"); you may not use this file except in compliance with +# the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +tika=great +file.content.detection=often.hard +properties\:files=fun with special characters... + +# Logs please! +log4j.appender.stdout=org.apache.log4j.ConsoleAppender +log4j.appender.stdout.layout=org.apache.log4j.PatternLayout +log4j.appender.stdout.layout.ConversionPattern=%5p [%t] (%F:%L) - %m%n Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJNILIB.jnilib URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJNILIB.jnilib?rev=1722027&view=auto ============================================================================== Binary file - no diff available. Propchange: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJNILIB.jnilib ------------------------------------------------------------------------------ svn:mime-type = application/octet-stream Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG.jp2 URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG.jp2?rev=1722027&view=auto ============================================================================== Binary file - no diff available. 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Propchange: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG_commented_xnviewmp026.jpg ------------------------------------------------------------------------------ svn:mime-type = application/octet-stream Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG_oddTagComponent.jpg URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG_oddTagComponent.jpg?rev=1722027&view=auto ============================================================================== Binary file - no diff available. Propchange: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJPEG_oddTagComponent.jpg ------------------------------------------------------------------------------ svn:mime-type = application/octet-stream Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJS.js URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJS.js?rev=1722027&view=auto ============================================================================== --- tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJS.js (added) +++ tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJS.js Mon Dec 28 23:10:16 2015 @@ -0,0 +1,53 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The ASF licenses this file + * to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, + * software distributed under the License is distributed on an + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY + * KIND, either express or implied. See the License for the + * specific language governing permissions and limitations + * under the License. + */ +function selectProvider(form) { + provider = form.elements['searchProvider'].value; + if (provider == "any") { + if (Math.random() > 0.5) { + provider = "lucid"; + } else { + provider = "sl"; + } + } + if (provider == "lucid") { + form.action = "http://search.lucidimagination.com/p:tika";; + } else if (provider == "sl") { + form.action = "http://search-lucene.com/tika";; + } + days = 90; + date = new Date(); + date.setTime(date.getTime() + (days * 24 * 60 * 60 * 1000)); + expires = "; expires=" + date.toGMTString(); + document.cookie = "searchProvider=" + provider + expires + "; path=/"; +} +function initProvider() { + if (document.cookie.length>0) { + cStart=document.cookie.indexOf("searchProvider="); + if (cStart!=-1) { + cStart=cStart + "searchProvider=".length; + cEnd=document.cookie.indexOf(";", cStart); + if (cEnd==-1) { + cEnd=document.cookie.length; + } + provider = unescape(document.cookie.substring(cStart,cEnd)); + document.forms['searchform'].elements['searchProvider'].value = provider; + } + } + document.forms['searchform'].elements['q'].focus(); +} Added: tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJournalParser.pdf URL: http://svn.apache.org/viewvc/tika/branches/2.x/tika-parser-test/src/main/resources/test-documents/testJournalParser.pdf?rev=1722027&view=auto ============================================================================== Binary file - no diff available. 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