Hi,
I want to use an input file which has lines of sequences in which each line
(RNA sequence) will be mapped to the mapper (an executable programthat
determines the secondary structure of each line of sequence). I am also using a
reducer which concatenates the output linesfrom the mapper. But I have some
problem that the final output is not sorted in an orderly manner as the input
sequence (RNA-1,RNA-2,RNA-3....).
STDIN INPUT FILE : RNA-1 RNA-2
RNA-3.....
MAPPER
OutPutMAP1<RNA-2><STRUCTURE-2>MAP2<RNA-1><STRUCTURE-1>MAP3<RNA-3><STRUCTURE-3>REDUCER
OUTPUT<RNA-2><RNA-1><RNA-3>\t<STRUCTURE-1><STRUCTURE-2><STRUCTURE-3>\n
OR<RNA-3><RNA-2><RNA-1>\t<STRUCTURE-1><STRUCTURE-2><STRUCTURE-3>\n
and what I am looking is to reduce in the following ordered manner:
<RNA-1><RNA-2><RNA-3>\t<STRUCTURE-1><STRUCTURE-2><STRUCTURE-3>\nlooking forward
to your input.
Regards,
Daniel T. Yehdego
Computational Science Program
University of Texas at El Paso, UTEP
[email protected]
