actually this kind of issues happen in my Ubuntu 10.4 installation quite often 
now. After restart they get solved but every now and then appear -- very 
annoying indeed considering that it happens in 2-3 of 10 restarts. This one 
solves the issue:
metacity --replace &

It affects all application windows and not specific to firefox.

-- 
[MASTER] Firefox problems with desktop-effects
https://bugs.launchpad.net/bugs/99740
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