Re: [COOT] defining NCS-related chains

[Phil Evans]

On the subject of NCS chains, Paul, I note that you are still using  
SSM superposition in determining NCS operators (unless it's been  
changed _very_ recently), rather than the LSQ algorithm which would  
preserve the sequence register. SSM gets the wrong answer in some  
cases, eg in some coiled-coil proteins such as BAR domains, where an  
out-of-register SSM superposition can give a lower score than the in- 
register one, and of course the correct NCS must be in register.

You did say quite a long time ago that you going to change this  :-)
Best wishes
Phil